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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004542 ID=TCONS_00004542|Name=TCONS_00004542|organism=Clytia hemisphaerica|type=transcript|length=3285bp
GCGGTTTTTCAACGAAGTATTACCAAACCGTCAGAAATCGAGTCCCGATG
AGCATCCAGTTGGGTTGCTTGATTCGTGAAGTAGTTCGATCGAGGTACGT
GCCAAGAATACTTACTAGGACCGCTCTGGTTGTTCTGATTAACTCAAGCT
TTCCTTTGGAAAAAAGTCACTGCTAGTTTGTGGTTTGATCGCTTGCTgAT
TATAATCATAAAAGACGAATAAAGATTAGAAGTATGGATGAGTCTTTGGA
TGAAACTTTCAATGAAAGGACTCTGGAAATCCAATCTCTTACCCGGTATG
GGCATGACTTGTTAATGAAGGGTTCTACAGTGGAAGCAAGCGAGGCTTTT
CTAAATGCTTATCAATTTGCGAAACAAGAGAATAATCCTTATGTTGTTCG
AGCATGCTCCTTCAATCTTGGAGCTTGTTATGTTGCAAGTGGACAAGCCA
AAGTTGGATTAAAGTACTTAGAAATGGCAATGCCTTCTGTCATTGATGAT
GATGGTTTAGAGAATTTTTCAGATCTGTGGTATAATATTGCTGTAGCACG
ACACTCGATGGGAGACATTGAACAAGCTAGCATTGCATATCAAAAAGCAC
AAGAAGGGTATAATAGGTTGGATTCAAGAAAACTTGAGGCTGAATGTTTA
TCTAAGCTAGCAGTTTGTTATCATTTATTGAGGCGTCTAAGTGAAAGTAA
AACATCTTATTATAAAGCACATGAATCATATGAGCGACTTGGAGACCGCA
ACAATCAAGCTCTGTGTCTGGTGAGTTTGACTGGAGTCTTCTCTGAGCTA
AAGGACATCGATGGTTGTGCTAAAGTTCTGGATATACTTTTGGATGTGTG
CCAAGACTTAGAAGACTGCTCGTTGCAAGCTAAGATTTATCATGATATTG
GCTTACTGTACATATCTGAGAAGCTTTACGAGTCGGCTGCAGAATGTTTT
GAGCAATCATTGAAATCAATGGACAAAGAACTTGTAGAGAATTCGATTGA
CAAACATTTGAAAGCCACTGTCCTTCAAAACCTTGGAGCAGTTTGCAATT
ACATGAGTAGCTACCAAAAGGCAATAGATTATCATCAGAAAGCCATTGAT
ATTTTTGGTGAAATTTCAGATCGATCAAGCCAAACAGAAGTCTTTGCAAA
TCTAGCTTATGCATTCACAAAGACAGAAGACTACGAAAATTCCATAATGG
CTTTCAAGCATGCAGTCAGATCAGCCAAGGATACTGGGAACCAAGAAGCT
CAATTTTTGGCTACAGAAGGGTTAGCTGCTGCCTATTTTAGAAATGGCAA
CTACGATAAATCAGTCCCAACGTATAAGGAAGCATTGAGTCTCATACCAC
CAAGTAAACCAGGGAGTGATAAGGTGTCATACACTGACAGAATCGTATCA
AAATTATCAGATGCCATGCAATTCCaacttgaaattcaacaaaaagaaGC
TGAGAGTGGTGATTCACCAAGGCGTAATAAAAACACAGCTTTTTACCATA
AAGACTCCGTAAATACAATGAGGTTCTTCCAAGAAAAACAACACTCATTG
ATTGCTAAAGGTTTAGAAGCTCACTCCAGTGATGGGGAGGAACAAGCTAG
CAGTTCTGAAGACGATCAAAGCAGCCTAAGCACCTCGGTATcccaaaaac
aacaacaacaacaacaacaacagaaaaataaacagaatTATAATAACGAA
GGGATGAATTTCAGCATGAAAAGCACATTGAATAAGAGTAATTATTATGA
GCAACCAGTCCAAGATGATGAGCAGATCCCAAGAGCAGTTAAGGAATATT
ATTTGGCGCAAGTTTGTCGAGAGAATAATGCTAAAAAGGAGGAACCAGCT
CCTAAAGAGAAAAAAGAGTCCTCAAAGATGTGTCTCATTATGTAATTTTG
TAagacttattaaaaaaaagttcttCCATCTCAGACAGAATTCCGTCTtg
ccaaagttttaaaaaagggCATTTTCTATTCCAAGATTTTTAGCAAAATG
CAataaaatatcaagaatattGGAAGAACCTGCGGAGATAAACTTTGCTT
GGACCACACTGCacttataaaaattatattattattatcaaaatGTCGTC
ACATTCCTAAGGAAATTGCTGCTTTACTCTACCTAAACCCTATCataggg
gcggttcaaaacttGGGGGgcggggcttttcctgtaccacccctcaactt
ttgatctagttgatctttttgaattgaaatttgGCACGCAAGATCCTTGT
CATATAAGGTAACAAGTGAGGTAAGgtaaagtgagcaaaaaccgaaaatt
tcctttgttcttctAAATAGCTAATTGTGATTTAACAAAGttccctgagt
ttaaaatgcaaATGAACGGTTTGAATGATaagaaataaatttgtattgga
aaagtgtcaatttttatgacacctCATTGATGAAGAGATTCATCATGCTC
ACAGTGTCAAAGTTTTTAGgtgtcaaaaattattttttttgaagctgACT
AAAAGTTTGGAATTAAAAAATGTCCAATTTTCGGTTATTAACATTTTCTC
CCCCctctagtacgaatagggttaaaagagTGTTTGAACCTAAATCAATT
TTTACCCTCTCCATCACTGTTCACCTTTAGGGGAatatcagatgattttt
tatatttggctTAAAGATACCTTTTATTGTCCGAGAGACACCTCTAAATC
TTTTGAcccattttttttctaaagctgagatatttgactttgaaatctct
aaaaatgagtCGTTACACAGTCTTTagttgaatttctattgttttcaagt
aaaaatttgaaaattcaaagtcgaatatctcagctttgAAAATAATGGGG
TCTAAAAATCAAAGGTGTTTTTTAGGATCATAAAAGGTTTCTCTTATGTC
TTAGCCAAATAGAATTATCTGATAATCACTTTAAGTTTAAGTACTGGCTT
TGTGGTTGTTTCAAACTTCTCGATATTATTTATTTATGAAATTGCCATAG
TATTTTTGGGGGGTAATGAATATCTTATATATTAAATAACTACATTATTA
ATATAAAGTATGATTTATTGTGTATATAGActtaattattttgatttttg
aggattgGTTTGGGGagataactttttttattttttttaaacgtGTACAT
AATCTTTAAAGGTTTAAAGATATATTCAGtcataaaaattatttaaaatt
tggCTTAATTACATTAATAACTTACGTTTAATGTTTTGCTCCCatttaga
tttttactttaGAATGATTTTTGATTAGACTTTCA Run BLAST on NCBI protein sequence of TCONS_00004542-protein >TCONS_00004542-protein ID=TCONS_00004542-protein|Name=TCONS_00004542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
MDESLDETFNERTLEIQSLTRYGHDLLMKGSTVEASEAFLNAYQFAKQEN
NPYVVRACSFNLGACYVASGQAKVGLKYLEMAMPSVIDDDGLENFSDLWY
NIAVARHSMGDIEQASIAYQKAQEGYNRLDSRKLEAECLSKLAVCYHLLR
RLSESKTSYYKAHESYERLGDRNNQALCLVSLTGVFSELKDIDGCAKVLD
ILLDVCQDLEDCSLQAKIYHDIGLLYISEKLYESAAECFEQSLKSMDKEL
VENSIDKHLKATVLQNLGAVCNYMSSYQKAIDYHQKAIDIFGEISDRSSQ
TEVFANLAYAFTKTEDYENSIMAFKHAVRSAKDTGNQEAQFLATEGLAAA
YFRNGNYDKSVPTYKEALSLIPPSKPGSDKVSYTDRIVSKLSDAMQFQLE
IQQKEAESGDSPRRNKNTAFYHKDSVNTMRFFQEKQHSLIAKGLEAHSSD
GEEQASSSEDDQSSLSTSVSQKQQQQQQQQKNKQNYNNEGMNFSMKSTLN
KSNYYEQPVQDDEQIPRAVKEYYLAQVCRENNAKKEEPAPKEKKESSKMC
LIM Run BLAST on NCBI transcript from alignment at sc0000045:115228..122271- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004542 ID=TCONS_00004542|Name=TCONS_00004542|organism=Clytia hemisphaerica|type=transcript|length=7044bp|location=Sequence derived from alignment at sc0000045:115228..122271- (Clytia hemisphaerica)
GCGGTTTTTCAACGAAGTATTACCAAACCGTCAGAAATCGAGTCCCGATG
AGCATCCAGTTGGGTTGCTTGATTCGTGAAGTAGTTCGATCGAGGTACGT
GCCAAGAATACTTACTAGGACCGCTCTGGTTGTTCTGATTAACTCAAGCT
TTCCTTTGGAAAAAAGTCACTGCTAGTTTGTGGTTTGATCGCTTGCTGGT
AAGTATTTTTTAATTTTACTCACATTGTCAGGAGTGCAGCCTAAGTGCTT
GGACTTTCTTGTTCTTGTCACTGTGAAACTGAGCAGGTTGTTTAGCTGGT
GTGTTAAAAAACAACCCACAGAGGTGGTATGAATGATGAAAAGGCGAAAA
TCATGATAAGGGGAAGCAGCATGCAATAAATAAAGCAGCTCAAATAAAGA
GGACCATAGTGTTCTGTGTTATGGTTTTCCCAATTTGGACTTTCTTCCTA
TGATGGAGAGCAACTCAGGTGCAATTTAAAGACCCTACACACCGGGCTTA
AAGAAACACATTCGGAGCAAAAAGTGCCGTTTTTTTCATGCTCCGGAACA
CCGGAAGATTTCGGAGCACTTCCAGAGTGTTCCGGAGCACGATTTTCGGC
GATTGGTCGGCACCAGAACTCCGGAACGTTTCGGTGCAGCAATGAATTTT
GAAATAAATATACCTTTTTTCAAAGAACAACCCTGTTGAATAATTATGTA
GTCAAGCCATACAAACAATGATACAGCAATGAATAATTACTGTTTCATGA
TGCATATTGTAATAATTATGCATGGGTGTAACATTGTTTTTCTGCTGGAC
TACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATTCATGT
ATAAAAAGGTTTTCAATTTTTGCCTGGAAAGGCTTGTGATGACGTCATCA
CAAAGCTTTCAACCTCCATAACCTTTGATAGAAATATTTTCAAGGCATGC
TTTATACCTCAATTTTCATCAGTATTTCATACTCTTTCCGCTGGAACTAT
CAGATTTTGAATATTTTCAAAAAAATACTTTTTGCCGCCAGCCACCTGGT
GACGTCATCTGGCAGGTGGTCAGGTAGACAGGAGACCCGTCGTGTGTTTT
TTTATAATTTGATGTACACAAGACGGGTTCGAGCTGTGAGTCCAATATTG
GACTCACATTTTTTACAGTGGGAAATTCGAATTTAGCGCTGTCCTCACTT
ACTAAAATAAAAACAAAATTTCGAAAGTTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGTTGCGCTTTCTCTA
AGAAAGTGTGACCAGTAAAAGAAAAACAAAATTTGATTGGCTATGTTTTC
AACCGTTATTAGGATCTAAGAAATTCAAACTCTCAGCCCGTACCATGCTA
TACATTTCGCCATCAGTTTATCAAAGAAGAAATCATAGCATGGATTCCCA
GGCTAGTGGTCAGGTGGCAAAATTTGGTGTTACTTTTTGAAATTAATTTT
TAAATCCTCTAAGGATCATATGTGCCAAATTTCATGCTTTTACATGGTTT
CATCCATGATTTTGAGTCCCCCCTTAAAACACAAATCACCCCTTATCAAT
TTATCCCCCCTTAAAGCTTAGAGATGGTTTTGAGGTGCCCCTTAAGTCTT
ACTCCCCCCTTAAATTTGCAAGACTCTTATGTATACATGCCCTTAATTTT
TGGGGTGTAGAGACAAGCGAGAAATTAGTCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAT
ATACCTGGTATAAAAATCCCTACAATACACTTTTCTAGAATCGTTTTCTC
CTCAAACTGATAGCATTTGAACGAAACTATTCCATATAGAAGCAGAACAG
CAAAATATTCCAAATTGAATGTCTTTAAAAAATGTAAATATTCGAATCAC
GGGCCATTCCATTACTGAAATGTGATTGGAGCCTTAGATGTAGTGTAGGA
TGATGGCACACCAAGGAAACAAAAATATTTTAGAATGCAACATTCGAAAA
TTCCATAGCTGGAATGTGATTGGAGCCTTAGATGTAGTGTAGGATGATGG
CACACCAAGGAAACAAAAATATTTTAGAATGCAACATTCGAAAATTCCAT
AGCTGGAATGTGATTGGAGCCTTAGATGCTTTGCAAGAGCCAAAGTCAAT
TTTCCAAAGTGGTGTCCCCACCCACCATTTTCTAAACTTTTACTAATTCG
TTTGCCTAGGCATAATGAGGAAGGAAATATTTAGTGGAGAAGAGTAGATT
TATCTTTGATGAATGGAAAAGGGGACAACAGGCCCCATCATGGTTGGGGC
TGACTAGAAAATTTTTTTAAAATCGACTGCCAAGCTACCCTAAATCACTA
AATACAAATAGACAAATTGACTTTCTAGAGTGAAAAGAAACTTTAAAGAA
AGAAAGTGTAATGCGAGCAAAGCGTGCGAAAAAATTGATGTTTTATGATT
TCAATATTGTTGTCAGCATTGGTCTTGAGGCGCAGTTAGATTTTCATTTA
ATAATGCTATATTGTACACAAAAAACTTGTAAATTAGCTAGATTGCAAAG
AAGTTAACAATGAACTGTTTTGCGAGCGAAGCGAGGGAAAAAATTGCAAG
AAAGGAACAAGATTACTCCCCCCTCAAGTAGCAAGGGCTTCCATTTGACC
CTTGAGACCAAGTCCCCCCTTATTTCTCAGTTTTTAACATTTTTGCCCCT
TGTGTTTTTCTCTAAATTTTAAATCACCCCTTATTTTAAGGGGGGGGGGC
TGAAACCATGTTTTATCACCATCTGAAGTATTCTTTCGTTTTTATGTGCT
ACCAGACCTCAATACTTGGATCAATTTGCATCAATTTTCATGTTTTGCTT
ATCCAAATCGCTACGTTAAAAATGTGCCACACTTTGTATGGGCCATCTAG
ACAAACCAAAACAAGTTACTGTGGTCAAGGATAGGTTCTTTAAGTTTAAT
GGATTTTATGAATATAGATTGAAAATGGCTCTCTTAAAACAGTTTTAAAT
GTAAATAAGTTGAAAATTTTTGATTTTAAAAATTTTTCTCTGGGCTACAG
TGCTTGATTTTATAAAATACATGTAATGTTAATCTGTGTATATCAGTACT
ATTTATTTAGATTATAATCATAAAAGACGAATAAAGATTAGAAGTATGGA
TGAGTCTTTGGATGAAACTTTCAATGAAAGGACTCTGGAAATCCAATCTC
TTACCCGGTATGGGCATGACTTGTTAATGAAGGGTTCTACAGTGGAAGCA
AGCGAGGCTTTTCTAAATGCTTATCAATTTGCGAAACAAGAGAATAATCC
TTATGTTGTTCGAGCATGCTCCTTCAATCTTGGAGCTTGTTATGTTGCAA
GTGGACAAGCCAAAGTTGGATTAAAGTACTTAGAAATGGCAATGCCTTCT
GTCATTGATGATGATGGTTTAGAGAATTTTTCAGATCTGTGGTATAATAT
TGCTGTAGCACGACACTCGATGGGAGACATTGAACAAGCTAGCATTGCAT
ATCAAAAAGCACAAGAAGGGTATAATAGGTTGGATTCAAGAAAACTTGAG
GCTGAATGTTTATCTAAGCTAGCAGTTTGTTATCATTTATTGAGGCGTCT
AAGTGAAAGTAAAACATCTTATTATAAAGCACATGAATCATATGAGCGAC
TTGGAGACCGCAACAATCAAGCTCTGTGTCTGGTGAGTTTGACTGGAGTC
TTCTCTGAGCTAAAGGACATCGATGGTTGTGCTAAAGTTCTGGATATACT
TTTGGATGTGTGCCAAGACTTAGAAGACTGCTCGTTGCAAGGTAAACAAT
ATATTATAGCAAGTATGAAGACAGATGTCAGCATTCCTTGCATTTCTGTT
GTTTGATCTTTTGTTTACTGTGTAGCCAGTACATTTGCACTATCTTGGAC
TATAAATCATTTGTCTTGATCCATATCAATTCTTTAAATGGAGAGTAATT
ATCTAATAGAATTTCATTTCCCAATAGACAGGAAAAAATAAAGTTGATAT
TCTTAACGTAAAAAGGAGTGAAATTTCTTAGAAATGAGCATTGAAATGTA
ACTTCTTTTAGTAATCAGGAAAATACCCAGGGGAGGTCCTTTTTTGCTCA
AAAGTTTTGCCATTTTTATGTTTTGCTTTGAATCCCCTTCATGTTTTATC
ATGACTTTGACTCATTTCATTCTACTCTAGCTAAGATTTATCATGATATT
GGCTTACTGTACATATCTGAGAAGCTTTACGAGTCGGCTGCAGAATGTTT
TGAGCAATCATTGAAATCAATGGACAAAGAACTTGTAGAGAATTCGATTG
ACAAACATTTGAAAGCCACTGTCCTTCAAAACCTTGGAGCAGTTTGCAAT
TACATGAGTAGCTACCAAAAGGCAATAGATTATCATCAGAAAGCCATTGA
TATTTTTGGTGAGTATACTCATTCCTTTTAGAGATAGTAAGTTAGTAAGT
TAGTCTTGCCATTGTATTTCAAGGCTTTTTCAAGACACCCATTTTGATAA
CTATAGTAACAAAAGGTAGCAAGGGTACAAATGAAGCCTTTCAATGGATT
GTTTGAAAAACTCTTGAATATTCTCACAGCAAGACAAGTTGTGCAATACT
TTTGTTTTTTCTAATTGCTGTATTTTGTAAACAAGATTTAGTGGTATTGA
TTCATTTGATTTGCAGGTGAAATTTCAGATCGATCAAGCCAAACAGAAGT
CTTTGCAAATCTAGCTTATGCATTCACAAAGACAGAAGACTACGAAAATT
CCATAATGGCTTTCAAGCATGCAGTCAGATCAGCCAAGGATACTGGGAAC
CAAGAAGCTCAATTTTTGGCTACAGAAGGGTTAGCTGCTGCCTATTTTAG
AAATGGCAACTACGATAAATCAGTCCCAACGTATAAGGAAGCATTGAGTC
TCATACCACCAAGTAAACCAGGGAGTGATAAGGTGTCATACACTGACAGA
ATCGTATCAAAATTATCAGATGCCATGCAATTCCAACTTGAAATTCAACA
AAAAGAAGCTGAGAGTGGTGATTCACCAAGGCGTAATAAAAACACAGCTT
TTTACCATAAAGACTCCGTAAATACAATGAGGTTCTTCCAAGAAAAACAA
CACTCATTGATTGCTAAAGGTTTAGAAGCTCACTCCAGTGATGGGGAGGA
ACAAGCTAGCAGTTCTGAAGACGATCAAAGCAGCCTAAGCACCTCGGTAT
CCCAAAAACAACAACAACAACAACAACAACAGAAAAATAAACAGAATTAT
AATAACGAAGGGATGAATTTCAGCATGAAAAGCACATTGAATAAGAGTAA
TTATTATGAGCAACCAGTCCAAGATGATGAGCAGATCCCAAGAGCAGTTA
AGGAATATTATTTGGCGCAAGTTTGTCGAGAGAATAATGCTAAAAAGGAG
GAACCAGCTCCTAAAGAGAAAAAAGAGTCCTCAAAGATGTGTCTCATTAT
GTAATTTTGTAAGACTTATTAAAAAAAAGTTCTTCCATCTCAGACAGAAT
TCCGTCTTGCCAAAGTTTTAAAAAAGGGCATTTTCTATTCCAAGATTTTT
AGCAAAATGCAATAAAATATCAAGAATATTGGAAGAACCTGCGGAGATAA
ACTTTGCTTGGACCACACTGCACTTATAAAAATTATATTATTATTATCAA
AATGTCGTCACATTCCTAAGGAAATTGCTGCTTTACTCTACCTAAACCCT
ATCATAGGGGCGGTTCAAAACTTGGGGGGCGGGGCTTTTCCTGTACCACC
CCTCAACTTTTGATCTAGTTGATCTTTTTGAATTGAAATTTGGCACGCAA
GATCCTTGTCATATAAGGTAACAAGTGAGGTAAGGTAAAGTGAGCAAAAA
CCGAAAATTTCCTTTGTTCTTCTAAATAGCTAATTGTGATTTAACAAAGT
TCCCTGAGTTTAAAATGCAAATGAACGGTTTGAATGATAAGAAATAAATT
TGTATTGGAAAAGTGTCAATTTTTATGACACCTCATTGATGAAGAGATTC
ATCATGCTCACAGTGTCAAAGTTTTTAGGTGTCAAAAATTATTTTTTTTG
AAGCTGACTAAAAGTTTGGAATTAAAAAATGTCCAATTTTCGGTTATTAA
CATTTTCTCCCCCCTCTAGTACGAATAGGGTTAAAAGAGTGTTTGAACCT
AAATCAATTTTTACCCTCTCCATCACTGTTCACCTTTAGGGGAATATCAG
ATGATTTTTTATATTTGGCTTAAAGATACCTTTTATTGTCCGAGAGACAC
CTCTAAATCTTTTGACCCATTTTTTTTCTAAAGCTGAGATATTTGACTTT
GAAATCTCTAAAAATGAGTCGTTACACAGTCTTTAGTTGAATTTCTATTG
TTTTCAAGTAAAAATTTGAAAATTCAAAGTCGAATATCTCAGCTTTGAAA
ATAATGGGGTCTAAAAATCAAAGGTGTTTTTTAGGATCATAAAAGGTTTC
TCTTATGTCTTAGCCAAATAGAATTATCTGATAATCACTTTAAGTTTAAG
TACTGGCTTTGTGGTTGTTTCAAACTTCTCGATATTATTTATTTATGAAA
TTGCCATAGTATTTTTGGGGGGTAATGAATATCTTATATATTAAATAACT
ACATTATTAATATAAAGTATGATTTATTGTGTATATAGACTTAATTATTT
TGATTTTTGAGGATTGGTTTGGGGAGATAACTTTTTTTATTTTTTTTAAA
CGTGTACATAATCTTTAAAGGTTTAAAGATATATTCAGTCATAAAAATTA
TTTAAAATTTGGCTTAATTACATTAATAACTTACGTTTAATGTTTTGCTC
CCATTTAGATTTTTACTTTAGAATGATTTTTGATTAGACTTTCA Coding sequence (CDS) from alignment at sc0000045:115228..122271- >TCONS_00004542 ID=TCONS_00004542|Name=TCONS_00004542|organism=Clytia hemisphaerica|type=CDS|length=4986bp|location=Sequence derived from alignment at sc0000045:115228..122271- (Clytia hemisphaerica)
GTGAAATTTCAGATCGATCAAGCCAAACAGAAGTCTTTGCAAATCTAGCT
TATGCATTCACAAAGACAGAAGACTACGAAAATTCCATAATGGCTTTCAA
GCATGCAGTCAGATCAGCCAAGGATACTGGGAACCAAGAAGCTCAATTTT
TGGCTACAGAAGGGTTAGCTGCTGCCTATTTTAGAAATGGCAACTACGAT
AAATCAGTCCCAACGTATAAGGAAGCATTGAGTCTCATACCACCAAGTAA
ACCAGGGAGTGATAAGGTGTCATACACTGACAGAATCGTATCAAAATTAT
CAGATGCCATGCAATTCCAACTTGAAATTCAACAAAAAGAAGCTGAGAGT
GGTGATTCACCAAGGCGTAATAAAAACACAGCTTTTTACCATAAAGACTC
CGTAAATACAATGAGGTTCTTCCAAGAAAAACAACACTCATTGATTGCTA
AAGGTTTAGAAGCTCACTCCAGTGATGGGGAGGAACAAGCTAGCAGTTCT
GAAGACGATCAAAGCAGCCTAAGCACCTCGGTATCCCAAAAACAACAACA
ACAACAACAACAACAGAAAAATAAACAGAATTATAATAACGAAGGGATGA
ATTTCAGCATGAAAAGCACATTGAATAAGAGTAATTATTATGAGCAACCA
GTCCAAGATGATGAGCAGATCCCAAGAGCAGTTAAGGAATATTATTTGGC
GCAAGTTTGTCGAGAGAATAATGCTAAAAAGGAGGAACCAGCTCCTAAAG
AGAAAAAAGAGTCCTCAAAGATGTGTCTCATTATGTAACTAAGATTTATC
ATGATATTGGCTTACTGTACATATCTGAGAAGCTTTACGAGTCGGCTGCA
GAATGTTTTGAGCAATCATTGAAATCAATGGACAAAGAACTTGTAGAGAA
TTCGATTGACAAACATTTGAAAGCCACTGTCCTTCAAAACCTTGGAGCAG
TTTGCAATTACATGAGTAGCTACCAAAAGGCAATAGATTATCATCAGAAA
GCCATTGATATTTTTGATGGATGAGTCTTTGGATGAAACTTTCAATGAAA
GGACTCTGGAAATCCAATCTCTTACCCGGTATGGGCATGACTTGTTAATG
AAGGGTTCTACAGTGGAAGCAAGCGAGGCTTTTCTAAATGCTTATCAATT
TGCGAAACAAGAGAATAATCCTTATGTTGTTCGAGCATGCTCCTTCAATC
TTGGAGCTTGTTATGTTGCAAGTGGACAAGCCAAAGTTGGATTAAAGTAC
TTAGAAATGGCAATGCCTTCTGTCATTGATGATGATGGTTTAGAGAATTT
TTCAGATCTGTGGTATAATATTGCTGTAGCACGACACTCGATGGGAGACA
TTGAACAAGCTAGCATTGCATATCAAAAAGCACAAGAAGGGTATAATAGG
TTGGATTCAAGAAAACTTGAGGCTGAATGTTTATCTAAGCTAGCAGTTTG
TTATCATTTATTGAGGCGTCTAAGTGAAAGTAAAACATCTTATTATAAAG
CACATGAATCATATGAGCGACTTGGAGACCGCAACAATCAAGCTCTGTGT
CTGGTGAGTTTGACTGGAGTCTTCTCTGAGCTAAAGGACATCGATGGTTG
TGCTAAAGTTCTGGATATACTTTTGGATGTGTGCCAAGACTTAGAAGACT
GCTCGTTGCAAGGTGAAATTTCAGATCGATCAAGCCAAACAGAAGTCTTT
GCAAATCTAGCTTATGCATTCACAAAGACAGAAGACTACGAAAATTCCAT
AATGGCTTTCAAGCATGCAGTCAGATCAGCCAAGGATACTGGGAACCAAG
AAGCTCAATTTTTGGCTACAGAAGGGTTAGCTGCTGCCTATTTTAGAAAT
GGCAACTACGATAAATCAGTCCCAACGTATAAGGAAGCATTGAGTCTCAT
ACCACCAAGTAAACCAGGGAGTGATAAGGTGTCATACACTGACAGAATCG
TATCAAAATTATCAGATGCCATGCAATTCCAACTTGAAATTCAACAAAAA
GAAGCTGAGAGTGGTGATTCACCAAGGCGTAATAAAAACACAGCTTTTTA
CCATAAAGACTCCGTAAATACAATGAGGTTCTTCCAAGAAAAACAACACT
CATTGATTGCTAAAGGTTTAGAAGCTCACTCCAGTGATGGGGAGGAACAA
GCTAGCAGTTCTGAAGACGATCAAAGCAGCCTAAGCACCTCGGTATCCCA
AAAACAACAACAACAACAACAACAACAGAAAAATAAACAGAATTATAATA
ACGAAGGGATGAATTTCAGCATGAAAAGCACATTGAATAAGAGTAATTAT
TATGAGCAACCAGTCCAAGATGATGAGCAGATCCCAAGAGCAGTTAAGGA
ATATTATTTGGCGCAAGTTTGTCGAGAGAATAATGCTAAAAAGGAGGAAC
CAGCTCCTAAAGAGAAAAAAGAGTCCTCAAAGATGTGTCTCATTATGTAA
CTAAGATTTATCATGATATTGGCTTACTGTACATATCTGAGAAGCTTTAC
GAGTCGGCTGCAGAATGTTTTGAGCAATCATTGAAATCAATGGACAAAGA
ACTTGTAGAGAATTCGATTGACAAACATTTGAAAGCCACTGTCCTTCAAA
ACCTTGGAGCAGTTTGCAATTACATGAGTAGCTACCAAAAGGCAATAGAT
TATCATCAGAAAGCCATTGATATTTTTGATGGATGAGTCTTTGGATGAAA
CTTTCAATGAAAGGACTCTGGAAATCCAATCTCTTACCCGGTATGGGCAT
GACTTGTTAATGAAGGGTTCTACAGTGGAAGCAAGCGAGGCTTTTCTAAA
TGCTTATCAATTTGCGAAACAAGAGAATAATCCTTATGTTGTTCGAGCAT
GCTCCTTCAATCTTGGAGCTTGTTATGTTGCAAGTGGACAAGCCAAAGTT
GGATTAAAGTACTTAGAAATGGCAATGCCTTCTGTCATTGATGATGATGG
TTTAGAGAATTTTTCAGATCTGTGGTATAATATTGCTGTAGCACGACACT
CGATGGGAGACATTGAACAAGCTAGCATTGCATATCAAAAAGCACAAGAA
GGGTATAATAGGTTGGATTCAAGAAAACTTGAGGCTGAATGTTTATCTAA
GCTAGCAGTTTGTTATCATTTATTGAGGCGTCTAAGTGAAAGTAAAACAT
CTTATTATAAAGCACATGAATCATATGAGCGACTTGGAGACCGCAACAAT
CAAGCTCTGTGTCTGGTGAGTTTGACTGGAGTCTTCTCTGAGCTAAAGGA
CATCGATGGTTGTGCTAAAGTTCTGGATATACTTTTGGATGTGTGCCAAG
ACTTAGAAGACTGCTCGTTGCAAGGTGAAATTTCAGATCGATCAAGCCAA
ACAGAAGTCTTTGCAAATCTAGCTTATGCATTCACAAAGACAGAAGACTA
CGAAAATTCCATAATGGCTTTCAAGCATGCAGTCAGATCAGCCAAGGATA
CTGGGAACCAAGAAGCTCAATTTTTGGCTACAGAAGGGTTAGCTGCTGCC
TATTTTAGAAATGGCAACTACGATAAATCAGTCCCAACGTATAAGGAAGC
ATTGAGTCTCATACCACCAAGTAAACCAGGGAGTGATAAGGTGTCATACA
CTGACAGAATCGTATCAAAATTATCAGATGCCATGCAATTCCAACTTGAA
ATTCAACAAAAAGAAGCTGAGAGTGGTGATTCACCAAGGCGTAATAAAAA
CACAGCTTTTTACCATAAAGACTCCGTAAATACAATGAGGTTCTTCCAAG
AAAAACAACACTCATTGATTGCTAAAGGTTTAGAAGCTCACTCCAGTGAT
GGGGAGGAACAAGCTAGCAGTTCTGAAGACGATCAAAGCAGCCTAAGCAC
CTCGGTATCCCAAAAACAACAACAACAACAACAACAACAGAAAAATAAAC
AGAATTATAATAACGAAGGGATGAATTTCAGCATGAAAAGCACATTGAAT
AAGAGTAATTATTATGAGCAACCAGTCCAAGATGATGAGCAGATCCCAAG
AGCAGTTAAGGAATATTATTTGGCGCAAGTTTGTCGAGAGAATAATGCTA
AAAAGGAGGAACCAGCTCCTAAAGAGAAAAAAGAGTCCTCAAAGATGTGT
CTCATTATGTAACTAAGATTTATCATGATATTGGCTTACTGTACATATCT
GAGAAGCTTTACGAGTCGGCTGCAGAATGTTTTGAGCAATCATTGAAATC
AATGGACAAAGAACTTGTAGAGAATTCGATTGACAAACATTTGAAAGCCA
CTGTCCTTCAAAACCTTGGAGCAGTTTGCAATTACATGAGTAGCTACCAA
AAGGCAATAGATTATCATCAGAAAGCCATTGATATTTTTGATGGATGAGT
CTTTGGATGAAACTTTCAATGAAAGGACTCTGGAAATCCAATCTCTTACC
CGGTATGGGCATGACTTGTTAATGAAGGGTTCTACAGTGGAAGCAAGCGA
GGCTTTTCTAAATGCTTATCAATTTGCGAAACAAGAGAATAATCCTTATG
TTGTTCGAGCATGCTCCTTCAATCTTGGAGCTTGTTATGTTGCAAGTGGA
CAAGCCAAAGTTGGATTAAAGTACTTAGAAATGGCAATGCCTTCTGTCAT
TGATGATGATGGTTTAGAGAATTTTTCAGATCTGTGGTATAATATTGCTG
TAGCACGACACTCGATGGGAGACATTGAACAAGCTAGCATTGCATATCAA
AAAGCACAAGAAGGGTATAATAGGTTGGATTCAAGAAAACTTGAGGCTGA
ATGTTTATCTAAGCTAGCAGTTTGTTATCATTTATTGAGGCGTCTAAGTG
AAAGTAAAACATCTTATTATAAAGCACATGAATCATATGAGCGACTTGGA
GACCGCAACAATCAAGCTCTGTGTCTGGTGAGTTTGACTGGAGTCTTCTC
TGAGCTAAAGGACATCGATGGTTGTGCTAAAGTTCTGGATATACTTTTGG
ATGTGTGCCAAGACTTAGAAGACTGCTCGTTGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004542-exon-sc0000045-1575043694:122074..122271 | TCONS_00004542-exon-sc0000045-1575043694:122074..122271 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1575043694:118281..118961 | TCONS_00004542-exon-sc0000045-1575043694:118281..118961 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1575043694:117664..117891 | TCONS_00004542-exon-sc0000045-1575043694:117664..117891 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1575043694:115228..117405 | TCONS_00004542-exon-sc0000045-1575043694:115228..117405 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1510915933:122074..122271 | TCONS_00004542-exon-sc0000045-1510915933:122074..122271 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1510915933:118281..118961 | TCONS_00004542-exon-sc0000045-1510915933:118281..118961 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1510915933:117664..117891 | TCONS_00004542-exon-sc0000045-1510915933:117664..117891 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1510915933:115228..117405 | TCONS_00004542-exon-sc0000045-1510915933:115228..117405 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1491911889:122074..122271 | TCONS_00004542-exon-sc0000045-1491911889:122074..122271 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1491911889:118281..118961 | TCONS_00004542-exon-sc0000045-1491911889:118281..118961 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1491911889:117664..117891 | TCONS_00004542-exon-sc0000045-1491911889:117664..117891 | Clytia hemisphaerica | exon |
| TCONS_00004542-exon-sc0000045-1491911889:115228..117405 | TCONS_00004542-exon-sc0000045-1491911889:115228..117405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:115228..122271 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00004542 vs. Swiss-Prot (Human)
Match: TTC24 (Tetratricopeptide repeat protein 24 OS=Homo sapiens GN=TTC24 PE=4 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.298e-43 Identity = 121/395 (30.63%), Postives = 198/395 (50.13%), Query Frame = 3
Query: 279 IQSLTRYGHDLLMKGSTVEA----SEAFLNAYQFAKQENNPYVVRACSFNLGACYVASGQAKVGLKYLEMAMPSVIDDDGLENFSDLWYNIAVARHSMGDIEQASIAYQKAQEGYNRLDSRKLEAECLSKLAVCYHLLRR-------LSESKTSYYKAHESYERLGDRNNQALCLVSLTGVFSELKDIDGCAKVLDILLDVCQDLEDCSLQAKIYHDIGLLYISEKLYESAAECFEQSLKSMDKELVENSIDKHLKATVLQNLGAVCNYMSSYQKAIDYHQKAIDIFGEISDRSSQTEVFANLAYAFTKTEDYENSIMAFKHAVRSAKDTGNQEAQFLATEGLAAAYFRNGNYDKSVPTYKEALSLIPPSKPGSDKVSYTDRIVSKLSDAMQFQL 1430
IQ+LTR GH L G EA AFL A + + + P V++AC+FNLGA YV +G GL+ L A P D +N+A+A H++G++ QA Y +A Y + + E +K+ CY L + L E+ +Y + + A C++ S + +VL+ + + + L +Y+D+GL Y +L+ A E F Q+L V +ATVL+NLG N + +YQ+A ++HQKA D+ G + R Q F +LA+A ++ D++ + + HA+++A+D+G+ + Q+ A EGL AA R G YD+++ YKEAL+ + S +R+V+KL+D ++ +L
Sbjct: 36 IQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRDTP-VLQACAFNLGAAYVETGDPARGLELLLRAHPEEKAQG--RRHGDQCFNVALAYHALGELPQALAWYHRALGHYQ---PQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALALGAAAGCMLK-----SGRHRVGEVVQVLEKSRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLC---WVPGE-----QATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDMKGQWQACEGLGAAAARLGQYDQALKYYKEALAQC-----QKEPDSVRERLVAKLADTVRTRL 406
The following BLAST results are available for this feature:
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