TCONS_00004533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004533
Unique NameTCONS_00004533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004533 ID=TCONS_00004533|Name=TCONS_00004533|organism=Clytia hemisphaerica|type=transcript|length=871bp
ATATCATTATTGGCTAcacagtgaatttttttttctccaaaggaACTGAA
ATTGATGACTTTTACTTAAATTATTCACTCTTAGATCTTcttaagagaga
aaaaaaaacataaatgcATTCCTCACTTTCACCACATTTACACCAGAATT
GCACAGACATTATCGAAGCATTTGAAAATTGTCATAAAGAATACGTGATT
GGAAAGTTCTTTGGAAAATGTAACAAACTGAAATTTCAATTAGCAAAGTG
TTTTGAAGAAGACACCAAGGAAAGAAGACGTCAAAACCGTGAAAAAGGAA
TTCAACAAAGGAAGGATTTCAATGATAAATATAATGAATATCTGAGGAct
ggaaaaaaagaatgaaatggttttatctcaaatcaaatgaataaTGCACT
ATTTGAAATTTGTTTGTATGTTATATATCGTCCTATGAGGTGACATGAAA
AAACTATTCAGGATTTTAGATCTCTTTGGACGTATAAGCTAACACAGACG
ATTTCCAGACCTAGATTTAGGCAAAATCAGTTCAATAAGTTGTTTTACAG
TCCCAACTGACCCTGAAATACAAAAGATTGATATTAAAATAACATTGTCA
TCTTTCTAAAGccttctaatttttttcttttgtttttttatatttaaaaa
ccATCAATTGATGATTTTTAGTTCTTCAATTATTTTAGGACCAtaatata
ttttaataaaaccTGGGCTGTGAAACAGCAAACTAATTTggcctttcttt
ttcttttttattgtcagTTgttatatttcaatttttttaaggttttgcat
TGATATTATTATCAACACTTATTTGTCacagatttttttgaattacATTG
Agagctaaaaattaaaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000045:805512..807468+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004533 ID=TCONS_00004533|Name=TCONS_00004533|organism=Clytia hemisphaerica|type=transcript|length=1957bp|location=Sequence derived from alignment at sc0000045:805512..807468+ (Clytia hemisphaerica)
ATATCATTATTGGCTAcacagtgaatttttttttctccaaaggaACTGAA
ATTGATGACTTTTACTTAAATTATTCACTCTTAGATCTTcttaagagaga
aaaaaaaacataaatgcATTCCTCACTTTCACCACATTTACACCAGAATT
GCACAGACATTATCGAAGCATTTGAAAATTGTCATAAAGAATACGTGATT
GGAAAGTTCTTTGGAAAATGTAACAAACTGAAATTTCAATTAGCAAAGTG
TTTTGAAGAAGACACCAAGGAAAGAAGACGTCAAAACCGTGAAAAAGGAA
TTCAACAAAGGAAGGATTTCAATGATAAATATAATGAATATCTGAGGAct
ggaaaaaaagaatgaaatggttttatctcaaatcaaatgaataaTGCACT
ATTTGAAATTTGTTTGTATGTTATATATCGTCCTATGAGGTGACATGAAA
AAACTATTCAGGATTTTAGATCTCTTTGGACGTATAAGCTAACACAGACG
ATTTCCAGACCTAGATTTAGGCAAAATCAGTTCAATAAGTTGTTTTACAG
TCCCAACTGACCCTGAAATACAAAAGATTGATATTAAAATAACATTGTCA
TCTTTCTAAAGccttctaatttttttcttttgtttttttatatttaaaaa
ccATCAATTGATGATTTTTAGTTCTTCAATTATTTTAGGACCAtaatata
ttttaataaaaccTGGGCTGTGAAACAGCAAACTAATTTggcctttcttt
ttcttttttattgtcaggcgaaccctaaaaatatttttgtttccggtcca
ccgggtgacgaaaaaaacactcacccggccggccgcaaaaaaattttttt
tgctaaatttcgNcttgattttttaaagcactcgtagaagttaaaatgat
ggtcttctttaccttaaatctgtagtaacttgacaccgctacaggcttcg
gcataagaaaaGTTCAAGTGTgatcatcgcacgcctagattttgatttat
agtggtctaggcgtgcgattattcaaatacttaattttcatcgtttatat
tttcaacTGTGTTACAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAAGAA
CTGgacactctctttcattttgaatatttatcttcaattgctaaaggctc
caaactgtgattacgaagtgaacttttttgagaaaaaagtagagggagag
aaacattttttaaatcctcactttacgaatgtttctttttattttactca
caagtcagcacgattccttttataaaaacaaagctgtttacttactgaaa
agtccccactctgtgaatgtttctatttattttactcacaaatcagcatg
attcttttataaaaaccaagttgtatataaaaaaaacattcttaaaggTT
GAGTTGAaagcaagaattaacaaaaacaatgcagggtttagtttgagatg
aataaaatttcatttctataacaATGATCATCGGCTNAGGGTttagtttg
agatgaataaaatttcatttctataatATAAAACCTTCAATCCAAGTGAT
TTCTAGGCGTATTTTAcagtagaatataaaatatcacgtgcgataaatca
cacgcctcaaaaactgattcacgaaagttttccaaacaaacaaactaacc
ctaacgatgatgtacgaaaaaagaatgcggccgggtgacaacgaaataaa
ttttcacccggccggtggaccggaaacaaaaaactttttcggggTCGCCT
CAGTTgttatatttcaatttttttaaggttttgcatTGATATTATTATCA
ACACTTATTTGTCacagatttttttgaattacATTGAgagctaaaaatta
aaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002551XLOC_002551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004533-exon-sc0000045-1491911889:805512..806278TCONS_00004533-exon-sc0000045-1491911889:805512..806278Clytia hemisphaericaexon
TCONS_00004533-exon-sc0000045-1510915933:805512..806278TCONS_00004533-exon-sc0000045-1510915933:805512..806278Clytia hemisphaericaexon
TCONS_00004533-exon-sc0000045-1575043694:805512..806278TCONS_00004533-exon-sc0000045-1575043694:805512..806278Clytia hemisphaericaexon
TCONS_00004533-exon-sc0000045-1491911889:807365..807468TCONS_00004533-exon-sc0000045-1491911889:807365..807468Clytia hemisphaericaexon
TCONS_00004533-exon-sc0000045-1510915933:807365..807468TCONS_00004533-exon-sc0000045-1510915933:807365..807468Clytia hemisphaericaexon
TCONS_00004533-exon-sc0000045-1575043694:807365..807468TCONS_00004533-exon-sc0000045-1575043694:807365..807468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:805512..807468 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.244	28.6387	25.8494	33.0071	26.0177	19.246	22.5305	24.2535	15.1288	9.62149	14.9313	10.3149	9.40954	7.18087	11.2595	12.3771	18.9489	22.7208	10.8242	11.4459	29.0685	25.4002	27.4669	27.1501	12.0257	14.6354	18.8121	13.3323	18.0827	17.7568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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