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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004533 ID=TCONS_00004533|Name=TCONS_00004533|organism=Clytia hemisphaerica|type=transcript|length=871bp
ATATCATTATTGGCTAcacagtgaatttttttttctccaaaggaACTGAA
ATTGATGACTTTTACTTAAATTATTCACTCTTAGATCTTcttaagagaga
aaaaaaaacataaatgcATTCCTCACTTTCACCACATTTACACCAGAATT
GCACAGACATTATCGAAGCATTTGAAAATTGTCATAAAGAATACGTGATT
GGAAAGTTCTTTGGAAAATGTAACAAACTGAAATTTCAATTAGCAAAGTG
TTTTGAAGAAGACACCAAGGAAAGAAGACGTCAAAACCGTGAAAAAGGAA
TTCAACAAAGGAAGGATTTCAATGATAAATATAATGAATATCTGAGGAct
ggaaaaaaagaatgaaatggttttatctcaaatcaaatgaataaTGCACT
ATTTGAAATTTGTTTGTATGTTATATATCGTCCTATGAGGTGACATGAAA
AAACTATTCAGGATTTTAGATCTCTTTGGACGTATAAGCTAACACAGACG
ATTTCCAGACCTAGATTTAGGCAAAATCAGTTCAATAAGTTGTTTTACAG
TCCCAACTGACCCTGAAATACAAAAGATTGATATTAAAATAACATTGTCA
TCTTTCTAAAGccttctaatttttttcttttgtttttttatatttaaaaa
ccATCAATTGATGATTTTTAGTTCTTCAATTATTTTAGGACCAtaatata
ttttaataaaaccTGGGCTGTGAAACAGCAAACTAATTTggcctttcttt
ttcttttttattgtcagTTgttatatttcaatttttttaaggttttgcat
TGATATTATTATCAACACTTATTTGTCacagatttttttgaattacATTG
Agagctaaaaattaaaaaaat Run BLAST on NCBI transcript from alignment at sc0000045:805512..807468+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004533 ID=TCONS_00004533|Name=TCONS_00004533|organism=Clytia hemisphaerica|type=transcript|length=1957bp|location=Sequence derived from alignment at sc0000045:805512..807468+ (Clytia hemisphaerica)
ATATCATTATTGGCTAcacagtgaatttttttttctccaaaggaACTGAA
ATTGATGACTTTTACTTAAATTATTCACTCTTAGATCTTcttaagagaga
aaaaaaaacataaatgcATTCCTCACTTTCACCACATTTACACCAGAATT
GCACAGACATTATCGAAGCATTTGAAAATTGTCATAAAGAATACGTGATT
GGAAAGTTCTTTGGAAAATGTAACAAACTGAAATTTCAATTAGCAAAGTG
TTTTGAAGAAGACACCAAGGAAAGAAGACGTCAAAACCGTGAAAAAGGAA
TTCAACAAAGGAAGGATTTCAATGATAAATATAATGAATATCTGAGGAct
ggaaaaaaagaatgaaatggttttatctcaaatcaaatgaataaTGCACT
ATTTGAAATTTGTTTGTATGTTATATATCGTCCTATGAGGTGACATGAAA
AAACTATTCAGGATTTTAGATCTCTTTGGACGTATAAGCTAACACAGACG
ATTTCCAGACCTAGATTTAGGCAAAATCAGTTCAATAAGTTGTTTTACAG
TCCCAACTGACCCTGAAATACAAAAGATTGATATTAAAATAACATTGTCA
TCTTTCTAAAGccttctaatttttttcttttgtttttttatatttaaaaa
ccATCAATTGATGATTTTTAGTTCTTCAATTATTTTAGGACCAtaatata
ttttaataaaaccTGGGCTGTGAAACAGCAAACTAATTTggcctttcttt
ttcttttttattgtcaggcgaaccctaaaaatatttttgtttccggtcca
ccgggtgacgaaaaaaacactcacccggccggccgcaaaaaaattttttt
tgctaaatttcgNcttgattttttaaagcactcgtagaagttaaaatgat
ggtcttctttaccttaaatctgtagtaacttgacaccgctacaggcttcg
gcataagaaaaGTTCAAGTGTgatcatcgcacgcctagattttgatttat
agtggtctaggcgtgcgattattcaaatacttaattttcatcgtttatat
tttcaacTGTGTTACAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAAGAA
CTGgacactctctttcattttgaatatttatcttcaattgctaaaggctc
caaactgtgattacgaagtgaacttttttgagaaaaaagtagagggagag
aaacattttttaaatcctcactttacgaatgtttctttttattttactca
caagtcagcacgattccttttataaaaacaaagctgtttacttactgaaa
agtccccactctgtgaatgtttctatttattttactcacaaatcagcatg
attcttttataaaaaccaagttgtatataaaaaaaacattcttaaaggTT
GAGTTGAaagcaagaattaacaaaaacaatgcagggtttagtttgagatg
aataaaatttcatttctataacaATGATCATCGGCTNAGGGTttagtttg
agatgaataaaatttcatttctataatATAAAACCTTCAATCCAAGTGAT
TTCTAGGCGTATTTTAcagtagaatataaaatatcacgtgcgataaatca
cacgcctcaaaaactgattcacgaaagttttccaaacaaacaaactaacc
ctaacgatgatgtacgaaaaaagaatgcggccgggtgacaacgaaataaa
ttttcacccggccggtggaccggaaacaaaaaactttttcggggTCGCCT
CAGTTgttatatttcaatttttttaaggttttgcatTGATATTATTATCA
ACACTTATTTGTCacagatttttttgaattacATTGAgagctaaaaatta
aaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004533-exon-sc0000045-1491911889:805512..806278 | TCONS_00004533-exon-sc0000045-1491911889:805512..806278 | Clytia hemisphaerica | exon |
| TCONS_00004533-exon-sc0000045-1510915933:805512..806278 | TCONS_00004533-exon-sc0000045-1510915933:805512..806278 | Clytia hemisphaerica | exon |
| TCONS_00004533-exon-sc0000045-1575043694:805512..806278 | TCONS_00004533-exon-sc0000045-1575043694:805512..806278 | Clytia hemisphaerica | exon |
| TCONS_00004533-exon-sc0000045-1491911889:807365..807468 | TCONS_00004533-exon-sc0000045-1491911889:807365..807468 | Clytia hemisphaerica | exon |
| TCONS_00004533-exon-sc0000045-1510915933:807365..807468 | TCONS_00004533-exon-sc0000045-1510915933:807365..807468 | Clytia hemisphaerica | exon |
| TCONS_00004533-exon-sc0000045-1575043694:807365..807468 | TCONS_00004533-exon-sc0000045-1575043694:807365..807468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:805512..807468 + |
Blast
The following BLAST results are available for this feature:
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