TCONS_00004528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004528
Unique NameTCONS_00004528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004528 ID=TCONS_00004528|Name=TCONS_00004528|organism=Clytia hemisphaerica|type=transcript|length=1148bp
TATATACTGTATATCAGGCAAATTGAAACAATTATTCTTGCCTGTGTCAA
AGTTGTGCTCACAACACAATTCCAGGGGGTGCAGGGATACTTGGTATATT
CATCCCGAGCATCCAAACCCTATACTAAAGAGGGTGATTTTTTGCTGACA
AAGAGagactaaaattgctttaaagAGACTTGCTGGTGCAACCCTTTTGG
TGTTCGCCAATAAACAAGATTTGCCAGGAGCTTTGAAAGCTGATGAGATT
GCAAAAGTATTAGAACTTGATGAAATCAAAACACATCATTGGCAAATTCT
TGGTTGCAGTGCTGTGACTGGTGAGAAACTTTTAGATGGagttgattggt
tgattggAGATATAGCTTCCCGGATATTTACCATGGATTGAGGAGATTCA
AATAACCAAAGGAGGTTAGGCGTGGTTTTGGAGACTGTTTGCTTACATCT
CCGACTGAAATTCGCCTTTGAATTAACTTGATtaaatttcgaaggaaaag
tAACATTGTTgttaaataaaaagtgaaaaaaaaatgaaatcattgGATGC
GTGTCTTCGTAGACGTGTATTGGAAAAGCAATAACAGTATAATCTATTGA
TCACACATAATTAttttaatgatgaaatttaTTCAATGCAATATTTCCAG
TAATAAATCCATACAGATAGAactatttaaaattttattacatcTAGATA
GGGAATATTTATTTTACtaaatttataatttgtaaataatcaaaatctat
caaaaaacaaaacttgGATAATGTATGGTTctcagagaagaaaaaaattc
tgctTCATTCTTTCCAGTCCTCTTTGATGATATCAGCAGCTTTTTCAGCG
ATCATAATTGTAGGTGCATTAGTATTTCCACTGACAATGGTTGGCATGAT
TGATGCATCGATAACACGTAATCCTTTGATACCATAAACTTTCAATGTTG
AATCTACAACTGCTTGATCATCAGTATGTGGTCCCATCTTGCACGTACCC
ACTGGGTGGTAAGTTGTTGTAGCTCCTCTCTTAGCAATGCATCCAAGGTA
GTCATCAGAATCTGAAAACAGATTTATTGTTATTACTGTAAGATTCAAAT
ACTTATTCTTAAACTCTTTAATTTGTTGGTTTGGTACATTTAGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000045:751610..754020+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004528 ID=TCONS_00004528|Name=TCONS_00004528|organism=Clytia hemisphaerica|type=transcript|length=2411bp|location=Sequence derived from alignment at sc0000045:751610..754020+ (Clytia hemisphaerica)
TATATACTGTATATCAGGCAAATTGAAACAATTATTCTTGCCTGTGTCAA
AGTTGTGCTCACAACACAATTCCAGGGGGTGCAGGGATACTTGGTATATT
CATCCCGAGCATCCAAACCCTATACTAAAGAGGGTGATTTTTTGCTGACA
AAGAGagactaaaattgctttaaaggTGAGCCTTaaaagagatttaaaaa
aattcaattattgAGAAAGAATCTTTCTTTTTGACCTTGGTTGTTTTTGT
AATGACCCCTGGATCACAACTGTTGAGTGTCGCCTGAAATATTTCTCAAT
TAGGTGGCATCTAAAGGCGAATGTCTAGATCTCTatggggggggtcggta
ctaaaatctcagacatcatgacatttagtgacgtggtggtactgcaaaaa
agctcaaaaatagttttagtaccatgtgtactaaaataccaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatacca
aaaagggtggtcccttaaagaaatatttgaaaaatcttagtattttgttc
taaaatcagccaaaatggagcatttttttaacaattttagtaaaaaattt
gatttttttttcaggaattttcgaaaaaatcttcagaaatctttcagaat
tttccaattttttaaatattttttagaaatatttttatgtacagtttagc
acagtttagtaataaaattacattattttgcagattgatgcgctaaattc
gactaggtttgtaacaatgaccccattttggtaaatttaaacccgtaaaa
gggcaaaaaatgggtggtatctatgttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtgctcaaaataattttagtacat
gtgtactaaaataacattttcgaaaaataggtggtggtatgcaagaaatt
cttgaaaatccttttagtactcatgtatgtctgacattttagtactgacc
cccccccctggtaaATGACCATTTAACTATCTTACTAAAGCAACGCGAGT
CCATAAAACAAACAAAGCAAGATTATAATGATTTTTCTCTTAATTCTATT
TAGGGGGACACAATATGttcatattcatgatatgcaccactgcaatgtct
tctgacatcaTATCacagacccaatagctgattggttgtaagtgacgtaa
aatcagtcaatacgtcactttcaatcaatcagctgtttggtccgtggaag
acattgcaatggtacaTATCATAAATTACTACATTAAAGGTTTTCAAAGG
AAGTGGAGTGTATTCAATTCTCACTTTTGCATTTTTAGAGACTTGCTGGT
GCAACCCTTTTGGTGTTCGCCAATAAACAAGATTTGCCAGGAGCTTTGAA
AGCTGATGAGATTGCAAAAGTATTAGAACTTGATGAAATCAAAACACATC
ATTGGCAAATTCTTGGTTGCAGTGCTGTGACTGGTGAGAAACTTTTAGAT
GGagttgattggttgattggAGATATAGCTTCCCGGATATTTACCATGGA
TTGAGGAGATTCAAATAACCAAAGGAGGTTAGGCGTGGTTTTGGAGACTG
TTTGCTTACATCTCCGACTGAAATTCGCCTTTGAATTAACTTGATtaaat
ttcgaaggaaaagtAACATTGTTgttaaataaaaagtgaaaaaaaaatga
aatcattgGATGCGTGTCTTCGTAGACGTGTATTGGAAAAGCAATAACAG
TATAATCTATTGATCACACATAATTAttttaatgatgaaatttaTTCAAT
GCAATATTTCCAGTAATAAATCCATACAGATAGAactatttaaaatttta
ttacatcTAGATAGGGAATATTTATTTTACtaaatttataatttgtaaat
aatcaaaatctatcaaaaaacaaaacttgGATAATGTATGGTTctcagag
aagaaaaaaattctgctTCATTCTTTCCAGTCCTCTTTGATGATATCAGC
AGCTTTTTCAGCGATCATAATTGTAGGTGCATTAGTATTTCCACTGACAA
TGGTTGGCATGATTGATGCATCGATAACACGTAATCCTTTGATACCATAA
ACTTTCAATGTTGAATCTACAACTGCTTGATCATCAGTATGTGGTCCCAT
CTTGCACGTACCCACTGGGTGGTAAGTTGTTGTAGCTCCTCTCTTAGCAA
TGCATCCAAGGTAGTCATCAGAATCTGAAAACAGATTTATTGTTATTACT
GTAAGATTCAAATACTTATTCTTAAACTCTTTAATTTGTTGGTTTGGTAC
ATTTAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002547XLOC_002547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004528-exon-sc0000045-1491911889:751610..751784TCONS_00004528-exon-sc0000045-1491911889:751610..751784Clytia hemisphaericaexon
TCONS_00004528-exon-sc0000045-1510915933:751610..751784TCONS_00004528-exon-sc0000045-1510915933:751610..751784Clytia hemisphaericaexon
TCONS_00004528-exon-sc0000045-1575043694:751610..751784TCONS_00004528-exon-sc0000045-1575043694:751610..751784Clytia hemisphaericaexon
TCONS_00004528-exon-sc0000045-1491911889:753048..754020TCONS_00004528-exon-sc0000045-1491911889:753048..754020Clytia hemisphaericaexon
TCONS_00004528-exon-sc0000045-1510915933:753048..754020TCONS_00004528-exon-sc0000045-1510915933:753048..754020Clytia hemisphaericaexon
TCONS_00004528-exon-sc0000045-1575043694:753048..754020TCONS_00004528-exon-sc0000045-1575043694:753048..754020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:751610..754020 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.31831	4.85202	1.18969	0.626616	7.02075	4.99563	4.45231	3.96923	2.22513	1.44176	0.433804	0.610243	0.517528	0.546915	0.254167	0.496604	0.933089	1.08472	0.309978	0.0664025	0.743607	0.627317	2.26639	2.95302	2.14512	2.78479	0.461723	0.442733	1.43135	0.836374
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR007867GMC_OxRtase_C
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
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BLAST of TCONS_00004528 vs. Swiss-Prot (Human)
Match: ARL2 (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 114.39 bits (285), Expect = 1.235e-29
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 2 
Query:  149 QRETKIAL--KRLAGATLLVFANKQDLPGALKADEIAKVLELDEIKTHHWQILGCSAVTGEKLLDGVDWLIGDIASRIFTMD 388
            QRE +  L  +RLAGATLL+FANKQDLPGAL ++ I +VLELD I++HHW I GCSAVTGE LL G+DWL+ DI+SRIFT D
Sbjct:  103 QRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFTAD 184
The following BLAST results are available for this feature:
BLAST of TCONS_00004528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL21.235e-2968.29ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
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