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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004528 ID=TCONS_00004528|Name=TCONS_00004528|organism=Clytia hemisphaerica|type=transcript|length=1148bp TATATACTGTATATCAGGCAAATTGAAACAATTATTCTTGCCTGTGTCAA AGTTGTGCTCACAACACAATTCCAGGGGGTGCAGGGATACTTGGTATATT CATCCCGAGCATCCAAACCCTATACTAAAGAGGGTGATTTTTTGCTGACA AAGAGagactaaaattgctttaaagAGACTTGCTGGTGCAACCCTTTTGG TGTTCGCCAATAAACAAGATTTGCCAGGAGCTTTGAAAGCTGATGAGATT GCAAAAGTATTAGAACTTGATGAAATCAAAACACATCATTGGCAAATTCT TGGTTGCAGTGCTGTGACTGGTGAGAAACTTTTAGATGGagttgattggt tgattggAGATATAGCTTCCCGGATATTTACCATGGATTGAGGAGATTCA AATAACCAAAGGAGGTTAGGCGTGGTTTTGGAGACTGTTTGCTTACATCT CCGACTGAAATTCGCCTTTGAATTAACTTGATtaaatttcgaaggaaaag tAACATTGTTgttaaataaaaagtgaaaaaaaaatgaaatcattgGATGC GTGTCTTCGTAGACGTGTATTGGAAAAGCAATAACAGTATAATCTATTGA TCACACATAATTAttttaatgatgaaatttaTTCAATGCAATATTTCCAG TAATAAATCCATACAGATAGAactatttaaaattttattacatcTAGATA GGGAATATTTATTTTACtaaatttataatttgtaaataatcaaaatctat caaaaaacaaaacttgGATAATGTATGGTTctcagagaagaaaaaaattc tgctTCATTCTTTCCAGTCCTCTTTGATGATATCAGCAGCTTTTTCAGCG ATCATAATTGTAGGTGCATTAGTATTTCCACTGACAATGGTTGGCATGAT TGATGCATCGATAACACGTAATCCTTTGATACCATAAACTTTCAATGTTG AATCTACAACTGCTTGATCATCAGTATGTGGTCCCATCTTGCACGTACCC ACTGGGTGGTAAGTTGTTGTAGCTCCTCTCTTAGCAATGCATCCAAGGTA GTCATCAGAATCTGAAAACAGATTTATTGTTATTACTGTAAGATTCAAAT ACTTATTCTTAAACTCTTTAATTTGTTGGTTTGGTACATTTAGAAAAG Run BLAST on NCBI transcript from alignment at sc0000045:751610..754020+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004528 ID=TCONS_00004528|Name=TCONS_00004528|organism=Clytia hemisphaerica|type=transcript|length=2411bp|location=Sequence derived from alignment at sc0000045:751610..754020+ (Clytia hemisphaerica) TATATACTGTATATCAGGCAAATTGAAACAATTATTCTTGCCTGTGTCAA
AGTTGTGCTCACAACACAATTCCAGGGGGTGCAGGGATACTTGGTATATT
CATCCCGAGCATCCAAACCCTATACTAAAGAGGGTGATTTTTTGCTGACA
AAGAGagactaaaattgctttaaaggTGAGCCTTaaaagagatttaaaaa
aattcaattattgAGAAAGAATCTTTCTTTTTGACCTTGGTTGTTTTTGT
AATGACCCCTGGATCACAACTGTTGAGTGTCGCCTGAAATATTTCTCAAT
TAGGTGGCATCTAAAGGCGAATGTCTAGATCTCTatggggggggtcggta
ctaaaatctcagacatcatgacatttagtgacgtggtggtactgcaaaaa
agctcaaaaatagttttagtaccatgtgtactaaaataccaaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatacca
aaaagggtggtcccttaaagaaatatttgaaaaatcttagtattttgttc
taaaatcagccaaaatggagcatttttttaacaattttagtaaaaaattt
gatttttttttcaggaattttcgaaaaaatcttcagaaatctttcagaat
tttccaattttttaaatattttttagaaatatttttatgtacagtttagc
acagtttagtaataaaattacattattttgcagattgatgcgctaaattc
gactaggtttgtaacaatgaccccattttggtaaatttaaacccgtaaaa
gggcaaaaaatgggtggtatctatgttNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtgctcaaaataattttagtacat
gtgtactaaaataacattttcgaaaaataggtggtggtatgcaagaaatt
cttgaaaatccttttagtactcatgtatgtctgacattttagtactgacc
cccccccctggtaaATGACCATTTAACTATCTTACTAAAGCAACGCGAGT
CCATAAAACAAACAAAGCAAGATTATAATGATTTTTCTCTTAATTCTATT
TAGGGGGACACAATATGttcatattcatgatatgcaccactgcaatgtct
tctgacatcaTATCacagacccaatagctgattggttgtaagtgacgtaa
aatcagtcaatacgtcactttcaatcaatcagctgtttggtccgtggaag
acattgcaatggtacaTATCATAAATTACTACATTAAAGGTTTTCAAAGG
AAGTGGAGTGTATTCAATTCTCACTTTTGCATTTTTAGAGACTTGCTGGT
GCAACCCTTTTGGTGTTCGCCAATAAACAAGATTTGCCAGGAGCTTTGAA
AGCTGATGAGATTGCAAAAGTATTAGAACTTGATGAAATCAAAACACATC
ATTGGCAAATTCTTGGTTGCAGTGCTGTGACTGGTGAGAAACTTTTAGAT
GGagttgattggttgattggAGATATAGCTTCCCGGATATTTACCATGGA
TTGAGGAGATTCAAATAACCAAAGGAGGTTAGGCGTGGTTTTGGAGACTG
TTTGCTTACATCTCCGACTGAAATTCGCCTTTGAATTAACTTGATtaaat
ttcgaaggaaaagtAACATTGTTgttaaataaaaagtgaaaaaaaaatga
aatcattgGATGCGTGTCTTCGTAGACGTGTATTGGAAAAGCAATAACAG
TATAATCTATTGATCACACATAATTAttttaatgatgaaatttaTTCAAT
GCAATATTTCCAGTAATAAATCCATACAGATAGAactatttaaaatttta
ttacatcTAGATAGGGAATATTTATTTTACtaaatttataatttgtaaat
aatcaaaatctatcaaaaaacaaaacttgGATAATGTATGGTTctcagag
aagaaaaaaattctgctTCATTCTTTCCAGTCCTCTTTGATGATATCAGC
AGCTTTTTCAGCGATCATAATTGTAGGTGCATTAGTATTTCCACTGACAA
TGGTTGGCATGATTGATGCATCGATAACACGTAATCCTTTGATACCATAA
ACTTTCAATGTTGAATCTACAACTGCTTGATCATCAGTATGTGGTCCCAT
CTTGCACGTACCCACTGGGTGGTAAGTTGTTGTAGCTCCTCTCTTAGCAA
TGCATCCAAGGTAGTCATCAGAATCTGAAAACAGATTTATTGTTATTACT
GTAAGATTCAAATACTTATTCTTAAACTCTTTAATTTGTTGGTTTGGTAC
ATTTAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004528-exon-sc0000045-1491911889:751610..751784 | TCONS_00004528-exon-sc0000045-1491911889:751610..751784 | Clytia hemisphaerica | exon |
TCONS_00004528-exon-sc0000045-1510915933:751610..751784 | TCONS_00004528-exon-sc0000045-1510915933:751610..751784 | Clytia hemisphaerica | exon |
TCONS_00004528-exon-sc0000045-1575043694:751610..751784 | TCONS_00004528-exon-sc0000045-1575043694:751610..751784 | Clytia hemisphaerica | exon |
TCONS_00004528-exon-sc0000045-1491911889:753048..754020 | TCONS_00004528-exon-sc0000045-1491911889:753048..754020 | Clytia hemisphaerica | exon |
TCONS_00004528-exon-sc0000045-1510915933:753048..754020 | TCONS_00004528-exon-sc0000045-1510915933:753048..754020 | Clytia hemisphaerica | exon |
TCONS_00004528-exon-sc0000045-1575043694:753048..754020 | TCONS_00004528-exon-sc0000045-1575043694:753048..754020 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000045 | supercontig | sc0000045:751610..754020 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
Term | Definition |
GO:0016491 | oxidoreductase activity |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
molecular_function |
GO:0016491 |
oxidoreductase activity |
molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
BLAST of TCONS_00004528 vs. Swiss-Prot (Human)
Match: ARL2 (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4) HSP 1 Score: 114.39 bits (285), Expect = 1.235e-29 Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 2
Query: 149 QRETKIAL--KRLAGATLLVFANKQDLPGALKADEIAKVLELDEIKTHHWQILGCSAVTGEKLLDGVDWLIGDIASRIFTMD 388
QRE + L +RLAGATLL+FANKQDLPGAL ++ I +VLELD I++HHW I GCSAVTGE LL G+DWL+ DI+SRIFT D
Sbjct: 103 QRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFTAD 184
The following BLAST results are available for this feature:
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