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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004525 ID=TCONS_00004525|Name=TCONS_00004525|organism=Clytia hemisphaerica|type=transcript|length=2030bp
CCTTATAGAGTTGAGGATACAATTGACCATCTGCATCAGTGACATGACCG
GTAAATTCATTCAGAACATTAACCAGAGCTGGTGAATGGTGCGATAAATA
CTTGTGCAATCCAAGACGAATGATATGAAAAGAGAAGACATTGTTATTGA
CCAGAGATGATTTGATGCTGGTGAGTTTACCAGGTGAAAGTGATTCACTG
CTTGCAAAGACGTGCAGAGTTACCAGGAAATCTAAGATCGCGTCACCAAG
GAATTCATATTCTTGGTAACAGCCAGTCACAGCATTTCCGATGTATGAGA
GATGCGTAGTTGCTTGGATCAAATGTGATTTGTCTTTGAAGGTGTAGCCT
ATGGTGTGCTCCACGTCGCTGAGACGACCTTTCTGATACAGGTCTTCAAC
TTCCTTGATTTGACGAAGATTCCCGACCTCTTCACTATCTCCTCTGAGTC
TTGGATCACGGACAGCCGAAGCAGCCTTTGGGAAATCACTGTAACAGCTC
CTGGTACCATATTGAATTCGATTTGAATTATGTTCATCAAGATCGATTCC
TTTGAACATGGTAGGGATTTTGAGAACATCATTCATGAAAACAAGGCAGT
CTTTGACACCAGCGCTTTGAAAGAATGCACCGATCAAAGCTTCCATACAG
TCAGCCAAAGACTTGTCTTGCACCACTTGGTATGAATAGGGACTTGAGAA
CAGTTCTTTTTCAGGTGTGTCTTCCTCCATTGGTTCGTCAGGTATGGATC
TCTTGAATGCAGGCGGTAGCCAGACGGTCAGTGGGTTTTTGTTGTCACTT
CCACGATTCGTATCACCAAAAtgtgaattgttcacataagAAGCTGCATT
CAATTGGACGGCAATGTGTGTCTTCCTCCATTGGTTCGTCAGGTATGGAT
CTCTTGAATGCAGGTGGTAGCCAGACGGTCAGTGGGTTTTTGTTGTCACT
TCCACGATTCGTATCACCAAAAtgtgaattgttcacataagAAGCTGCAT
TCAATTGGACGGCAATGTTGCGGAGATTCTTGTTACTGATCTGTTGTTTC
CTGATCAAAGTCAACCGACCTTCATCATAAGTTGGGTGcttgaaaaacaa
gaaaatcgACACAGCTTGTTTCAAGAATGCATCACCGAGCATCTCCAGAC
GTTCTAAGTTGACATCAAACAAAGCTTGCCTTGTTGTCAATGCTTCGAAG
ATTTCAGACGGTGCTGGAGATTTTGGAAATCTTGGATGCAATAATAATCT
CATCTTCTGTATCTCTGAAGCACTTGATCCCTGGTTCATCTCCATTTCAC
CTGCGTCTGGTAAATCCATATAGGATAGAATCTTGTTCCGGAATTCATCA
GCATTCAATCCACATTCGAATCGGTACAGAAAGTAAGGAAACAGGATAGC
TTGCATATGAAGTTGAGAAGACAAGGAGCTAACTACTTGACATAGCTCTG
GAACCAACTCTTCTTTGTGTCGACCACTTTCTTTCTTGCTGTCTCTCATG
GTTTCTACTTCATGGTAATTGACAGATCTGGAGACTGGGACGACTTGCAT
TAGTAATGAATTGACATCGACAGGACGGTTGTATCTTTTCTGGTAATAAT
GTGCAAAAGTTTTGTTTCCTTCCATAAAGTCACCAGCTATTTTGGTTGAC
GGCTCAACGACATAGTAAGGACGTCTATTCATTTTCTCATCGTCTAGGTA
AGTCTTCCTAATAACCTGTTGTTGGTTAGGATCAGGAATTTGATTGAGAT
TCAGTGACTTTGAGACTGTATCCATCTGCATGAAGTCGATTGGTTGCGAC
TTGAATCTAAAGACATCACGTTGGATTTGAGACATTGCTTTTGGTGTTAG
TATCACAACGAAAGCTTTGGAGATTTCAAAATCTGTATCATCTCTGTAAA
GCGTCAAATCTTCGGGAATGTATTGCTTGTAGAAGTCTGTAGACATATAC
TGACTGAATCTTTCAATAGATTCTTGATGTTTGGTGGAGAGCTGAAATGA
TGGTGATTCAAGTTTTCTCAACGTGACAGT Run BLAST on NCBI transcript from alignment at sc0000045:707184..709611+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004525 ID=TCONS_00004525|Name=TCONS_00004525|organism=Clytia hemisphaerica|type=transcript|length=2428bp|location=Sequence derived from alignment at sc0000045:707184..709611+ (Clytia hemisphaerica)
CCTTATAGAGTTGAGGATACAATTGACCATCTGCATCAGTGACATGACCG
GTAAATTCATTCAGAACATTAACCAGAGCTGGTGAATGGTGCGATAAATA
CTTGTGCAATCCAAGACGAATGATATGAAAAGAGAAGACATTGTTATTGA
CCAGAGATGATTTGATGCTGGTGAGTTTACCAGGTGAAAGTGATTCACTG
CTTGCAAAGACGTGCAGAGTTACCAGGAAATCTAAGATCGCGTCACCAAG
GAATTCATATTCTTGGTAACAGCCAGTCACAGCATTTCCGATGTATGAGA
GATGCGTAGTTGCTTGGATCAAATGTGATTTGTCTTTGAAGGTGTAGCCT
ATGGTGTGCTCCACGTCGCTGAGACGACCTTTCTGATACAGGTCTTCAAC
TTCCTTGATTTGACGAAGATTCCCGACCTCTTCACTATCTCCTCTGAGTC
TTGGATCACGGACAGCCGAAGCAGCCTTTGGGAAATCACTGTAACAGCTC
CTGGTACCATATTGAATTCGATTTGAATTATGTTCATCAAGATCGATTCC
TTTGAACATGGTAGGGATTTTGAGAACATCATTCATGAAAACAAGGCAGT
CTTTGACACCAGCGCTTTGAAAGAATGCACCGATCAAAGCTTCCATACAG
TCAGCCAAAGACTTGTCTTGCACCACTTGGTATGAATAGGGACTTGAGAA
CAGTTCTTTTTCAGGTGTGTCTTCCTCCATTGGTTCGTCAGGTATGGATC
TCTTGAATGCAGGCGGTAGCCAGACGGTCAGTGGGTTTTTGTTGTCACTT
CCACGATTCGTATCACCAAAAtgtgaattgttcacataagAAGCTGCATT
CAATTGGACGGCAATGTTGCGGAGATTCTTGTTACTGATCTGTTGTTTCC
TGATCAAAGTCAACCGACCTTCATCATAAGTTGGGTGCTTGAAAAANTCC
TTGATTTGACGAAGATTCCCGACCTCTTCACTATCTCCTCTGAGTCTTGG
ATCACGAACAGCCGAAGCAGCCTTTGGGAAATCACTGTAACAGCTCCTGG
TACCATATTGAATTCGATTTGAATTATGTTCATCAGGATGGATTCCTTTG
AACATGGTAGGGATTTTGAGAACATCGTTCATGAAAACAAGGCAATCTTT
GACACCAGCGCTTTGAAAGAATGCACCGATCAAAGCTTCCATACAGTCAG
CCAAAGACTTGTCTTGCACAACTTGGTATGAATAAGGACTTGAGAACGGT
AGTTCTTTTTCAGGTGTGTCTTCCTCCATTGGTTCGTCAGGTATGGATCT
CTTGAATGCAGGTGGTAGCCAGACGGTCAGTGGGTTTTTGTTGTCACTTC
CACGATTCGTATCACCAAAAtgtgaattgttcacataagAAGCTGCATTC
AATTGGACGGCAATGTTGCGGAGATTCTTGTTACTGATCTGTTGTTTCCT
GATCAAAGTCAACCGACCTTCATCATAAGTTGGGTGcttgaaaaacaaga
aaatcgACACAGCTTGTTTCAAGAATGCATCACCGAGCATCTCCAGACGT
TCTAAGTTGACATCAAACAAAGCTTGCCTTGTTGTCAATGCTTCGAAGAT
TTCAGACGGTGCTGGAGATTTTGGAAATCTTGGATGCAATAATAATCTCA
TCTTCTGTATCTCTGAAGCACTTGATCCCTGGTTCATCTCCATTTCACCT
GCGTCTGGTAAATCCATATAGGATAGAATCTTGTTCCGGAATTCATCAGC
ATTCAATCCACATTCGAATCGGTACAGAAAGTAAGGAAACAGGATAGCTT
GCATATGAAGTTGAGAAGACAAGGAGCTAACTACTTGACATAGCTCTGGA
ACCAACTCTTCTTTGTGTCGACCACTTTCTTTCTTGCTGTCTCTCATGGT
TTCTACTTCATGGTAATTGACAGATCTGGAGACTGGGACGACTTGCATTA
GTAATGAATTGACATCGACAGGACGGTTGTATCTTTTCTGGTAATAATGT
GCAAAAGTTTTGTTTCCTTCCATAAAGTCACCAGCTATTTTGGTTGACGG
CTCAACGACATAGTAAGGACGTCTATTCATTTTCTCATCGTCTAGGTAAG
TCTTCCTAATAACCTGTTGTTGGTTAGGATCAGGAATTTGATTGAGATTC
AGTGACTTTGAGACTGTATCCATCTGCATGAAGTCGATTGGTTGCGACTT
GAATCTAAAGACATCACGTTGGATTTGAGACATTGCTTTTGGTGTTAGTA
TCACAACGAAAGCTTTGGAGATTTCAAAATCTGTATCATCTCTGTAAAGC
GTCAAATCTTCGGGAATGTATTGCTTGTAGAAGTCTGTAGACATATACTG
ACTGAATCTTTCAATAGATTCTTGATGTTTGGTGGAGAGCTGAAATGATG
GTGATTCAAGTTTTCTCAACGTGACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004525-exon-sc0000045-1491911889:707184..708048 | TCONS_00004525-exon-sc0000045-1491911889:707184..708048 | Clytia hemisphaerica | exon |
| TCONS_00004525-exon-sc0000045-1510915933:707184..708048 | TCONS_00004525-exon-sc0000045-1510915933:707184..708048 | Clytia hemisphaerica | exon |
| TCONS_00004525-exon-sc0000045-1575043694:707184..708048 | TCONS_00004525-exon-sc0000045-1575043694:707184..708048 | Clytia hemisphaerica | exon |
| TCONS_00004525-exon-sc0000045-1491911889:708447..709611 | TCONS_00004525-exon-sc0000045-1491911889:708447..709611 | Clytia hemisphaerica | exon |
| TCONS_00004525-exon-sc0000045-1510915933:708447..709611 | TCONS_00004525-exon-sc0000045-1510915933:708447..709611 | Clytia hemisphaerica | exon |
| TCONS_00004525-exon-sc0000045-1575043694:708447..709611 | TCONS_00004525-exon-sc0000045-1575043694:708447..709611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:707184..709611 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004525 | ribonuclease III activity |
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006396 |
RNA processing |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0004525 |
ribonuclease III activity |
Blast
BLAST of TCONS_00004525 vs. Swiss-Prot (Human)
Match: DICER (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3) HSP 1 Score: 117.087 bits (292), Expect = 7.742e-27 Identity = 83/251 (33.07%), Postives = 129/251 (51.39%), Query Frame = -2
Query: 50 PMEE----DTPEKELFSSPYSYQVVQDKSLADCMEALIGAFFQSAGVKDCLVFMNDV-LKIPTMFKGIDLDE------HNSNRIQYG---TRSCYSDFPKAASAVRD---------PRLRGDSEEVGNLRQIKEVEDLYQKGRLSDVEHTIGYTFKDKSHLIQATTHLSYIGNAVTGCYQEYEFLGDAILDFLVTLHVFASSESLSPGKLTSIKSSLVNNNVFSFHIIRLGLHKYLSHHSPALVNVLNEFT 733
P EE DT ++ + ++ Q + DKS+ADC+EAL+G + S G + +F+ + LK+ + K D ++ N N Q + + S +S ++D PR D + K + L + E I Y FK+K++L+QA TH SY N +T CYQ EFLGDAILD+L+T H++ SPG LT ++S+LVNN +F+ ++ HKY SP L +V+++F
Sbjct: 1530 PSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDAD-----KTLNHLISG--FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFV 1773
The following BLAST results are available for this feature:
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