|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004522 ID=TCONS_00004522|Name=TCONS_00004522|organism=Clytia hemisphaerica|type=transcript|length=1735bpRun BLAST on NCBI protein sequence of TCONS_00004522-protein >TCONS_00004522-protein ID=TCONS_00004522-protein|Name=TCONS_00004522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp MVKQITREDGEDRTSPFNDQQTTEDETTRDVLSESDDYPDGNYDEKPLIPRun BLAST on NCBI transcript from alignment at sc0000045:628217..645507+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004522 ID=TCONS_00004522|Name=TCONS_00004522|organism=Clytia hemisphaerica|type=transcript|length=17291bp|location=Sequence derived from alignment at sc0000045:628217..645507+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000045:628217..645507+ >TCONS_00004522 ID=TCONS_00004522|Name=TCONS_00004522|organism=Clytia hemisphaerica|type=CDS|length=13554bp|location=Sequence derived from alignment at sc0000045:628217..645507+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004522 vs. Swiss-Prot (Human)
Match: S36A1 (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 2.217e-101 Identity = 172/413 (41.65%), Postives = 256/413 (61.99%), Query Frame = 2
Query: 317 WQAAMHILKGNIGTGILGLPIAVKHAGVIIGPAVLAVIAVISVHCMHLVVSASHALCLRNRADHYDYGEVAEQVFLIYGGP-KW----ASRARFVLDSFLVLTQLGFCCVYFLFVAENLKQ-------------------LFGLFDVRIWILVLLIPVLSLAYIQKLKFIAYISTAANLLSFFGLMGTYQYLFFHLENPASFPASAPLKEFPLFFGTALFAFEGIGIVLPIENKMRKREDFFWVLDLSMAFVASLFISMGFFGYITFGDQLLPSVTLNLPKLPFYVLVKLGYTLAIFFTYFIQFYVPMEILIPPLKKGLAKGCTTGIDIFMRTAMVVVTCALAITIPQLDNFISLIGSTAAAALALVFPPMLYTMCFWKQDITKMEIVKNVTISSLGTIGAIFGTWLSVEAII 1483
+Q +H+LKGNIGTG+LGLP+AVK+AG+++GP L +I +++VHCM ++V +H C R DYG+ ++ + P W A R V+D FL++TQLGFCCVYF+F+A+N KQ L D R+++L L ++ L +I+ L+ ++ S AN+ L+ YQ++ + +P+ P AP K +PLFFGTA+F+FEGIG+VLP+ENKM+ F +L L M V L+IS+G GY+ FG + S+TLNLP Y VKL Y++ IFFTY +QFYVP EI+IP + C +D+F+RT +V +TC LAI IP+LD ISL+GS +++ALAL+ PP+L F+ + ++ + I K+ IS LG +G + GT+ ++ +I
Sbjct: 50 FQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTV--MYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLTIFKDALISILGFVGFVVGTYEALYELI 460 The following BLAST results are available for this feature:
BLAST of TCONS_00004522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.