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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004512 ID=TCONS_00004512|Name=TCONS_00004512|organism=Clytia hemisphaerica|type=transcript|length=1426bp
ATCCAAGCTGATATCAACCTTTTTTATTCTTTCTCATTCTTTCTTATTTA
GAAAATCTTAACAGCATTTGAAGAGGATAATATAGACAATTACACAGAAG
CGgTAAGGGAATACGATTCTATATCAAGACTTGATCAGTGGTACACAACT
ATCTTGTTACGAGTGAAAAGTAAAATTGGAAGTGGTGGTATTGCTGTCAA
AGACGATGGTGAACCTGACCTAAGTTAAACTCTTCCTTTTCCATCTTTCC
TCGTTTCTCTCACATCTGGATTTTCCTGATAAAAGATATATAAATTCAGT
GCATTCTGATGGAATGTCTTACATAGAATGAGTAGCCAGGATAATATGAA
CTCTTTGTATGTGGAATAAACGACAAAGCTACTACGCACCAATCATTGTT
CGaacgaattattttttttatatcgaaatcataatttttaaatgaaCCAG
TTTCTTCATTGATGTGTAATGCTTGTATGTATACACCAACTATCAACCCT
TACCTGCGCGGTCTGCTTCTGAGGGGATTGGTAATGAATTGGCAGGGAAA
TGACGtcgaaatttgttgtttttgagaATGTCAATGCAACAACTTCagac
attttgacgtcattccttTCTGCTAAACTCGAACCCAATCTCCTCACACA
TTAAAGGTTGATAGGTATATTAATGTGTATACGTTCTTCTCAAAATTTCA
GACTCACTCTTTTACTGCTGATCAATGCAATTATTGATTTCTCTTAGTTT
GTAACTTATAGCAAGGAACGTGCTTATAGTTTTAAGTCATTATTTTTGCC
AAGGACCTCTTTTGAAAATCTTCTGTCTATTAGGTTCTTAGGGTCGactc
attttattttatattttggtCAGTCTGTTGCCAAAAAATATTATTCCAAA
TAAAGAACTATGCAATACAGTACCTGTTTTTGGGGGTAACTTTtaattat
tataattatattttatgcctcgatataattttcaaaaagagcattttgtt
tatgttttattttttttcttgttatatATTTATGAATTCAAATAATTATG
ATGAAATTTATGGAGAAGTTTTTCTCCAAGGCCAGATCTATTTTGACTGG
TTGATTTGGTAGGGGTTTTAACTCattgataaagatttttttattgaaac
tgAAGTACAGGAACAATTCGGTATAGtatcttttttctatttctaaaacT
GTTTCCATAATAAACGAATGGTCTATCCCATGGCCCTAAATTAACATCAA
GCCGATTTTATTATCAAATACAGAGGAAAAATAGCGTGACTCCATTTTTT
AGGGTTGTCcttttgtaaatttgattttatttttgcctccTGGACGTCAA
AATTGctttaagaaaattgatttttttcgaaatattttgttCCTACTATT
TTTGTTGAGAttcttcgaaaaaaaaa Run BLAST on NCBI transcript from alignment at sc0000045:521799..526785+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004512 ID=TCONS_00004512|Name=TCONS_00004512|organism=Clytia hemisphaerica|type=transcript|length=4987bp|location=Sequence derived from alignment at sc0000045:521799..526785+ (Clytia hemisphaerica)
ATCCAAGCTGATATCAACCTTTTTTATTCTTTCTCATTCTTTCTTATTTA
GAAAATCTTAACAGCATTTGAAGAGGATAATATAGACAATTACACAGAAG
CGGTAAGTCATTTGTTAAATCCACAAACCTTTTTACTATTGGTCTCAAAC
CTTACTTTAGAGTGCTTTCTTTCCTTCTCCTGCACATCAACAGAATATTA
CAAAAAGGCAAAGTATTTGGTAAAATGGGGAATTTGCTAAACGCCAAAAA
TGGTTTTTAAGTGATCTAAGTATAACTAACTTATGGGAAGcagtgtttta
aaatgagacttTTAAATTTATGGatcaaaagctttaaaatgttccaataa
ggttGGAACCCCTCCGAAATCGAGattgaaaatactaaaatacttaaaat
ttgaaaaacattacCCAAGGTTCtcattttatttcaaacttAATTCTAGT
TCAACCTTTCGCAGACCCTAAAGCCTGACAGGATTGTAAACTTTCGGGCT
GTTCTCAAGTCTGTCCGGTCCTAAAATTTCGACGTTGGTTTTCTAGGTTA
TTTATAGGGAGGTCTTAAATGTTAAATCATGAAATGCAATCCTTCATAAT
TTTTATTGTCgaacaaaaatcaattttcagttttattaaccttctttcca
attttttttgagcattgAGAAATTGTGATTAAAGGACTGCGGGATGGACA
AACAACTTTTCTTTTGTAAAGATTATGATGAATTCAGCTATTTGAATAGT
TTCTTTTCCGACAGACGTTCTAGAACACCGTTATTAtataaaagattcaa
aaaagatTGTTATGAGGGAGGCATATACGATTAAAAACATTTCATATTAT
TTGATTGGATTGTTTATGCAAATATTATCATTACATAAAAATGACATTCC
AATGTTTTGTTGATAATGTCTTATTAAAAACCAATCCAAGGTGAccttgt
tttgatttgagtttatcATCAAACAGCCTGAGGCACATAACAATCCCACG
TAATTAGCAATTCATTATCattcaaaaaagtcaatgttGAGTTTTATTAT
CTTTACATCTTTAATAAGAAATAGCGCTGACCTTTGATATGATTCATTGA
ATGTACCATAAGTGTCTCTAATACTGTCCAGATTTTTCATCCCTTTTCTA
CTAATACATATATAAATTTAAGATCATCATAGATTTAATTTGGTTTTCAA
AGCCGATTTACATAGATTTAGTTTATTTAAAATTCCTTTTCCGAAAGGCT
TGTCATAGAACTCACACTGATGATAATTTTCTTCATTACAAATTATACTC
ATATTGTTAGAGAgggaaataaaaaattgtagCCTTGCCAAATAGTCTAA
TCGTCAAGCCTGAAAATAGCCCCGAGAGCTATGGTGTAGGCAAATGTAGG
AGTTTGTTAGTATTTTGATAAACATGATCTATTTATAAGACttatattat
atttgaaaaaaaagactcGAAATCAAAATTACTAATTTTAGTAAAGCTGT
TTGACCTCGCtcagtttttttttgtcttttaatgcgtctaaaaatgacat
ttgtTTCTCACATGTTTCTCTACATCTCTGGCAGAAGCTTGACCTTTTGA
ATTAAGTCATAAAAAGTGCTCATTCATTCAGTCTGAACTGGCCAATACTC
AAGCCTCTTTTTGCAATGATTTTAAACTCCAAGCAGACCAAATTTAACGA
GGAATCCATAAGGTCACCTGAGGGTTATTGCTAATCAGATGTTGATTTTA
AGTTCTTTGTCTACCTAGCATGTCGTTACAAATtgactttgtgaaaaaaa
tctttcaatcttATTTTATCAGGACGTTTCGACCATGCTGCTTATCTTAA
TAGCTATTCGAGTGATCGGCAGATAGTGAATACGTGAAATCATAAAGAGA
ATTTGATAACTGGACTAATGATTTGTCTTGACTggttttccaaatctttt
aGAAATCTTTAACAGATGCAGTACAATTTGTTAGCTacaaaaaaagatga
atttCAATTTCCACACCTAGTAGTAGATAATCTAAAATTTCCTTATTTAA
TTTGTTACTTCGGGTCTACTTTTTTATCCAATTTCGTTCCAACTTCTCTT
GATAAATGACTGCAAGACATACTCTTGTGCGTGATGTGTCGTTATAAATG
ATAACACTCCAGCTATCATTCATATCAGTAAAATTTCCCTACATTACCAT
GGTTactcacaaaacaaaacaaatcagtTTACCTTGCAACCTAGACAACA
CACGCAAATTTTGGTCCCAAAAACCCTTATACCTTGATCTGTTTTCATAT
CCTAAGTAtttttgatattcatgacgtaatctctttgatacggaaacacc
cgaaaaacgCCGGGTGTTTGCCACCAGtttcattgtttaaattcaaaact
agTGGCAGAGGCCAGGTGTTTTTCGTGTGTTTCCGTAtacaagattacgt
catgaatatcaagaaatgCAAACACCTTTTCTCACAAGATTTTCTGCTCA
Tccaggggggggtcatgcagttattacataaacactatgacaattactac
cgtggtggtatataaaccaaaatttgggaaaacagttactccaccagtgg
actaactgcaacatgggtggtgcctaagcccaaaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNagtacactatggaataactgcaagg
gtggtggtgtctgtagaaaatgtccaaaattgcagttactccacatagtg
tcaaggagtaactgcaagacccccccccctggctcaTCCGTTTTTTAACA
TTGCTTTCTGAACGAAGATTTAATCTTTAAACGCCTCTGTCCTGCAAAAA
GGACACcaccatggcgttctaaatcttcATAGCCCTCTAGTCCAACCTGT
CTACGGATACCACCATAAGCTAATCACTGCTACTGCTACAGTCTCAAAat
catttctttcttcttcttttcaggTAAGGGAATACGATTCTATATCAAGA
CTTGATCAGTGGTACACAACTATCTTGTTACGAGTGAAAAGTAAAATTGG
AAGTGGTGGTATTGCTGTCAAAGACGATGGTGAACCTGACCTAAGTTAAA
CTCTTCCTTTTCCATCTTTCCTCGTTTCTCTCACATCTGGATTTTCCTGA
TAAAAGATATATAAATTCAGTGCATTCTGATGGAATGTCTTACATTATAA
TATGTCTGGGGTTACCATCAAGCTACCACAGACATAGAATGAGTAGCCAG
GATAATATGAACTCTTTGTATGTGGAATAAACGACAAAGCTACTACGCAC
CAATCATTGTTCGaacgaattattttttttatatcgaaatcataattttt
aaatgaaCCAGTTTCTTCATTGATGTGTAATGCTTGTATGTATACACCAA
CTATCAACCCTTACCTGCGCGGTCTGCTTCTGAGGGGATTGGTAATGAAT
TGGCAGGGAAATGACGtcgaaatttgttgtttttgagaATGTCAATGCAA
CAACTTCagacattttgacgtcattccttTCTGCTAAACTCGAACCCAAT
CTCCTCACACATTAAAGGTTGATAGGTATATTAATGTGTATACGTTCTTC
TCAAAATTTCAGACTCACTCTTTTACTGCTGATCAATGCAATTATTGATT
TCTCTTAGTTTGTAACTTATAGCAAGGAACGTGCTTATAGTTTTAAGTCA
TTATTTTTGCCAAGGACCTCTTTTGAAAATCTTCTGTCTATTAGGTTCTT
AGGGTCGactcattttattttatattttggtCAGTCTGTTGCCAAAAAAT
ATTATTCCAAATAAAGAACTATGCAATACAGTACCTGTTTTTGGGGGTAA
CTTTtaattattataattatattttatgcctcgatataattttcaaaaag
agcattttgtttatgttttattttttttcttgttatatATTTATGAATTC
AAATAATTATGATGAAATTTATGGAGAAGTTTTTCTCCAAGGCCAGATCT
ATTTTGACTGGTTGATTTGGTAGGGGTTTTAACTCattgataaagatttt
tttattgaaactgAAGTACAGGAACAATTCGGTATAGtatcttttttcta
tttctaaaacTGTTTCCATAATAAACGAATGGTCTATCCCATGGCCCTAA
ATTAACATCAAGCCGATTTTATTATCAAATACAGAGGAAAAATAGCGTGA
CTCCATTTTTTAGGGTTGTCcttttgtaaatttgattttatttttgcctc
cTGGACGTCAAAATTGctttaagaaaattgatttttttcgaaatattttg
ttCCTACTATTTTTGTTGAGAttcttcgaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004512-exon-sc0000045-1491911889:521799..521900 | TCONS_00004512-exon-sc0000045-1491911889:521799..521900 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1510915933:521799..521900 | TCONS_00004512-exon-sc0000045-1510915933:521799..521900 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1575043694:521799..521900 | TCONS_00004512-exon-sc0000045-1575043694:521799..521900 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1491911889:525422..525641 | TCONS_00004512-exon-sc0000045-1491911889:525422..525641 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1510915933:525422..525641 | TCONS_00004512-exon-sc0000045-1510915933:525422..525641 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1575043694:525422..525641 | TCONS_00004512-exon-sc0000045-1575043694:525422..525641 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1491911889:525682..526785 | TCONS_00004512-exon-sc0000045-1491911889:525682..526785 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1510915933:525682..526785 | TCONS_00004512-exon-sc0000045-1510915933:525682..526785 | Clytia hemisphaerica | exon |
| TCONS_00004512-exon-sc0000045-1575043694:525682..526785 | TCONS_00004512-exon-sc0000045-1575043694:525682..526785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:521799..526785 + |
Blast
The following BLAST results are available for this feature:
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