TCONS_00004512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004512
Unique NameTCONS_00004512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004512 ID=TCONS_00004512|Name=TCONS_00004512|organism=Clytia hemisphaerica|type=transcript|length=1426bp
ATCCAAGCTGATATCAACCTTTTTTATTCTTTCTCATTCTTTCTTATTTA
GAAAATCTTAACAGCATTTGAAGAGGATAATATAGACAATTACACAGAAG
CGgTAAGGGAATACGATTCTATATCAAGACTTGATCAGTGGTACACAACT
ATCTTGTTACGAGTGAAAAGTAAAATTGGAAGTGGTGGTATTGCTGTCAA
AGACGATGGTGAACCTGACCTAAGTTAAACTCTTCCTTTTCCATCTTTCC
TCGTTTCTCTCACATCTGGATTTTCCTGATAAAAGATATATAAATTCAGT
GCATTCTGATGGAATGTCTTACATAGAATGAGTAGCCAGGATAATATGAA
CTCTTTGTATGTGGAATAAACGACAAAGCTACTACGCACCAATCATTGTT
CGaacgaattattttttttatatcgaaatcataatttttaaatgaaCCAG
TTTCTTCATTGATGTGTAATGCTTGTATGTATACACCAACTATCAACCCT
TACCTGCGCGGTCTGCTTCTGAGGGGATTGGTAATGAATTGGCAGGGAAA
TGACGtcgaaatttgttgtttttgagaATGTCAATGCAACAACTTCagac
attttgacgtcattccttTCTGCTAAACTCGAACCCAATCTCCTCACACA
TTAAAGGTTGATAGGTATATTAATGTGTATACGTTCTTCTCAAAATTTCA
GACTCACTCTTTTACTGCTGATCAATGCAATTATTGATTTCTCTTAGTTT
GTAACTTATAGCAAGGAACGTGCTTATAGTTTTAAGTCATTATTTTTGCC
AAGGACCTCTTTTGAAAATCTTCTGTCTATTAGGTTCTTAGGGTCGactc
attttattttatattttggtCAGTCTGTTGCCAAAAAATATTATTCCAAA
TAAAGAACTATGCAATACAGTACCTGTTTTTGGGGGTAACTTTtaattat
tataattatattttatgcctcgatataattttcaaaaagagcattttgtt
tatgttttattttttttcttgttatatATTTATGAATTCAAATAATTATG
ATGAAATTTATGGAGAAGTTTTTCTCCAAGGCCAGATCTATTTTGACTGG
TTGATTTGGTAGGGGTTTTAACTCattgataaagatttttttattgaaac
tgAAGTACAGGAACAATTCGGTATAGtatcttttttctatttctaaaacT
GTTTCCATAATAAACGAATGGTCTATCCCATGGCCCTAAATTAACATCAA
GCCGATTTTATTATCAAATACAGAGGAAAAATAGCGTGACTCCATTTTTT
AGGGTTGTCcttttgtaaatttgattttatttttgcctccTGGACGTCAA
AATTGctttaagaaaattgatttttttcgaaatattttgttCCTACTATT
TTTGTTGAGAttcttcgaaaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000045:521799..526785+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004512 ID=TCONS_00004512|Name=TCONS_00004512|organism=Clytia hemisphaerica|type=transcript|length=4987bp|location=Sequence derived from alignment at sc0000045:521799..526785+ (Clytia hemisphaerica)
ATCCAAGCTGATATCAACCTTTTTTATTCTTTCTCATTCTTTCTTATTTA GAAAATCTTAACAGCATTTGAAGAGGATAATATAGACAATTACACAGAAG CGGTAAGTCATTTGTTAAATCCACAAACCTTTTTACTATTGGTCTCAAAC CTTACTTTAGAGTGCTTTCTTTCCTTCTCCTGCACATCAACAGAATATTA CAAAAAGGCAAAGTATTTGGTAAAATGGGGAATTTGCTAAACGCCAAAAA TGGTTTTTAAGTGATCTAAGTATAACTAACTTATGGGAAGcagtgtttta aaatgagacttTTAAATTTATGGatcaaaagctttaaaatgttccaataa ggttGGAACCCCTCCGAAATCGAGattgaaaatactaaaatacttaaaat ttgaaaaacattacCCAAGGTTCtcattttatttcaaacttAATTCTAGT TCAACCTTTCGCAGACCCTAAAGCCTGACAGGATTGTAAACTTTCGGGCT GTTCTCAAGTCTGTCCGGTCCTAAAATTTCGACGTTGGTTTTCTAGGTTA TTTATAGGGAGGTCTTAAATGTTAAATCATGAAATGCAATCCTTCATAAT TTTTATTGTCgaacaaaaatcaattttcagttttattaaccttctttcca attttttttgagcattgAGAAATTGTGATTAAAGGACTGCGGGATGGACA AACAACTTTTCTTTTGTAAAGATTATGATGAATTCAGCTATTTGAATAGT TTCTTTTCCGACAGACGTTCTAGAACACCGTTATTAtataaaagattcaa aaaagatTGTTATGAGGGAGGCATATACGATTAAAAACATTTCATATTAT TTGATTGGATTGTTTATGCAAATATTATCATTACATAAAAATGACATTCC AATGTTTTGTTGATAATGTCTTATTAAAAACCAATCCAAGGTGAccttgt tttgatttgagtttatcATCAAACAGCCTGAGGCACATAACAATCCCACG TAATTAGCAATTCATTATCattcaaaaaagtcaatgttGAGTTTTATTAT CTTTACATCTTTAATAAGAAATAGCGCTGACCTTTGATATGATTCATTGA ATGTACCATAAGTGTCTCTAATACTGTCCAGATTTTTCATCCCTTTTCTA CTAATACATATATAAATTTAAGATCATCATAGATTTAATTTGGTTTTCAA AGCCGATTTACATAGATTTAGTTTATTTAAAATTCCTTTTCCGAAAGGCT TGTCATAGAACTCACACTGATGATAATTTTCTTCATTACAAATTATACTC ATATTGTTAGAGAgggaaataaaaaattgtagCCTTGCCAAATAGTCTAA TCGTCAAGCCTGAAAATAGCCCCGAGAGCTATGGTGTAGGCAAATGTAGG AGTTTGTTAGTATTTTGATAAACATGATCTATTTATAAGACttatattat atttgaaaaaaaagactcGAAATCAAAATTACTAATTTTAGTAAAGCTGT TTGACCTCGCtcagtttttttttgtcttttaatgcgtctaaaaatgacat ttgtTTCTCACATGTTTCTCTACATCTCTGGCAGAAGCTTGACCTTTTGA ATTAAGTCATAAAAAGTGCTCATTCATTCAGTCTGAACTGGCCAATACTC AAGCCTCTTTTTGCAATGATTTTAAACTCCAAGCAGACCAAATTTAACGA GGAATCCATAAGGTCACCTGAGGGTTATTGCTAATCAGATGTTGATTTTA AGTTCTTTGTCTACCTAGCATGTCGTTACAAATtgactttgtgaaaaaaa tctttcaatcttATTTTATCAGGACGTTTCGACCATGCTGCTTATCTTAA TAGCTATTCGAGTGATCGGCAGATAGTGAATACGTGAAATCATAAAGAGA ATTTGATAACTGGACTAATGATTTGTCTTGACTggttttccaaatctttt aGAAATCTTTAACAGATGCAGTACAATTTGTTAGCTacaaaaaaagatga atttCAATTTCCACACCTAGTAGTAGATAATCTAAAATTTCCTTATTTAA TTTGTTACTTCGGGTCTACTTTTTTATCCAATTTCGTTCCAACTTCTCTT GATAAATGACTGCAAGACATACTCTTGTGCGTGATGTGTCGTTATAAATG ATAACACTCCAGCTATCATTCATATCAGTAAAATTTCCCTACATTACCAT GGTTactcacaaaacaaaacaaatcagtTTACCTTGCAACCTAGACAACA CACGCAAATTTTGGTCCCAAAAACCCTTATACCTTGATCTGTTTTCATAT CCTAAGTAtttttgatattcatgacgtaatctctttgatacggaaacacc cgaaaaacgCCGGGTGTTTGCCACCAGtttcattgtttaaattcaaaact agTGGCAGAGGCCAGGTGTTTTTCGTGTGTTTCCGTAtacaagattacgt catgaatatcaagaaatgCAAACACCTTTTCTCACAAGATTTTCTGCTCA Tccaggggggggtcatgcagttattacataaacactatgacaattactac cgtggtggtatataaaccaaaatttgggaaaacagttactccaccagtgg actaactgcaacatgggtggtgcctaagcccaaaNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNagtacactatggaataactgcaagg gtggtggtgtctgtagaaaatgtccaaaattgcagttactccacatagtg tcaaggagtaactgcaagacccccccccctggctcaTCCGTTTTTTAACA TTGCTTTCTGAACGAAGATTTAATCTTTAAACGCCTCTGTCCTGCAAAAA GGACACcaccatggcgttctaaatcttcATAGCCCTCTAGTCCAACCTGT CTACGGATACCACCATAAGCTAATCACTGCTACTGCTACAGTCTCAAAat catttctttcttcttcttttcaggTAAGGGAATACGATTCTATATCAAGA CTTGATCAGTGGTACACAACTATCTTGTTACGAGTGAAAAGTAAAATTGG AAGTGGTGGTATTGCTGTCAAAGACGATGGTGAACCTGACCTAAGTTAAA CTCTTCCTTTTCCATCTTTCCTCGTTTCTCTCACATCTGGATTTTCCTGA TAAAAGATATATAAATTCAGTGCATTCTGATGGAATGTCTTACATTATAA TATGTCTGGGGTTACCATCAAGCTACCACAGACATAGAATGAGTAGCCAG GATAATATGAACTCTTTGTATGTGGAATAAACGACAAAGCTACTACGCAC CAATCATTGTTCGaacgaattattttttttatatcgaaatcataattttt aaatgaaCCAGTTTCTTCATTGATGTGTAATGCTTGTATGTATACACCAA CTATCAACCCTTACCTGCGCGGTCTGCTTCTGAGGGGATTGGTAATGAAT TGGCAGGGAAATGACGtcgaaatttgttgtttttgagaATGTCAATGCAA CAACTTCagacattttgacgtcattccttTCTGCTAAACTCGAACCCAAT CTCCTCACACATTAAAGGTTGATAGGTATATTAATGTGTATACGTTCTTC TCAAAATTTCAGACTCACTCTTTTACTGCTGATCAATGCAATTATTGATT TCTCTTAGTTTGTAACTTATAGCAAGGAACGTGCTTATAGTTTTAAGTCA TTATTTTTGCCAAGGACCTCTTTTGAAAATCTTCTGTCTATTAGGTTCTT AGGGTCGactcattttattttatattttggtCAGTCTGTTGCCAAAAAAT ATTATTCCAAATAAAGAACTATGCAATACAGTACCTGTTTTTGGGGGTAA CTTTtaattattataattatattttatgcctcgatataattttcaaaaag agcattttgtttatgttttattttttttcttgttatatATTTATGAATTC AAATAATTATGATGAAATTTATGGAGAAGTTTTTCTCCAAGGCCAGATCT ATTTTGACTGGTTGATTTGGTAGGGGTTTTAACTCattgataaagatttt tttattgaaactgAAGTACAGGAACAATTCGGTATAGtatcttttttcta tttctaaaacTGTTTCCATAATAAACGAATGGTCTATCCCATGGCCCTAA ATTAACATCAAGCCGATTTTATTATCAAATACAGAGGAAAAATAGCGTGA CTCCATTTTTTAGGGTTGTCcttttgtaaatttgattttatttttgcctc cTGGACGTCAAAATTGctttaagaaaattgatttttttcgaaatattttg ttCCTACTATTTTTGTTGAGAttcttcgaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002538XLOC_002538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004512-exon-sc0000045-1491911889:521799..521900TCONS_00004512-exon-sc0000045-1491911889:521799..521900Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1510915933:521799..521900TCONS_00004512-exon-sc0000045-1510915933:521799..521900Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1575043694:521799..521900TCONS_00004512-exon-sc0000045-1575043694:521799..521900Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1491911889:525422..525641TCONS_00004512-exon-sc0000045-1491911889:525422..525641Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1510915933:525422..525641TCONS_00004512-exon-sc0000045-1510915933:525422..525641Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1575043694:525422..525641TCONS_00004512-exon-sc0000045-1575043694:525422..525641Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1491911889:525682..526785TCONS_00004512-exon-sc0000045-1491911889:525682..526785Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1510915933:525682..526785TCONS_00004512-exon-sc0000045-1510915933:525682..526785Clytia hemisphaericaexon
TCONS_00004512-exon-sc0000045-1575043694:525682..526785TCONS_00004512-exon-sc0000045-1575043694:525682..526785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:521799..526785 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.2251 23.1401 21.4547 22.5078 25.4354 16.6822 32.1947 34.035 31.2967 29.9417 30.0368 25.1035 23.3431 21.9668 20.5924 20.9263 27.7491 26.5578 15.9284 22.9913 29.6513 27.5921 28.1437 26.2553 19.155 22.6542 33.2175 24.4869 34.5241 27.6254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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