TCONS_00004511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004511
Unique NameTCONS_00004511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004511 ID=TCONS_00004511|Name=TCONS_00004511|organism=Clytia hemisphaerica|type=transcript|length=533bp
ATAATCATCCATCGTATTGATTAATGAAAAGtttaaacataaaaatttgT
CAGTGAAAAATGGGAGATGAAGAAAGGGCAAACAATTTCTATATGGAAGC
TCAAAAGAAGATGGAGTCTACAAAAGGCTTCATGAGCAGAATGTTCGGAG
CTCATTCCAAAATAGAAGATGCTTGTGACCTCTTTCAAAGAGCTGGAAAC
GCTTATAAGATGGCCAAAAAGTGGAGTGCTGCTGGAAATGCATTCTGCGA
GCTGGCCAAGATTCAGTTGAATCAGCTTCAAAGTAAACATGAAGCTGCCA
CGCAGTATGTGGAAGCTGCAAATTGTTACCGCAAATCTGATCACCAAGAG
GCAATCAATTGTTTAGAATTAGCAGTAGAAATCTTCACAGATATGGGAAG
ATTTGCCATAGCTGCAAAGCATCATGTTACGATAGCTGAAATTTATGAAT
CCAACTTGATGAATGTAGATATGGCGATAACACACTTCACACAAGCAGCC
GACTATTATAAAGGAGAAGAATCTTCAAGGTGA
Run BLAST on NCBI

protein sequence of TCONS_00004511-protein

>TCONS_00004511-protein ID=TCONS_00004511-protein|Name=TCONS_00004511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MGDEERANNFYMEAQKKMESTKGFMSRMFGAHSKIEDACDLFQRAGNAYK
MAKKWSAAGNAFCELAKIQLNQLQSKHEAATQYVEAANCYRKSDHQEAIN
CLELAVEIFTDMGRFAIAAKHHVTIAEIYESNLMNVDMAITHFTQAADYY
KGEESSR
Run BLAST on NCBI

transcript from alignment at sc0000045:502764..519923+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004511 ID=TCONS_00004511|Name=TCONS_00004511|organism=Clytia hemisphaerica|type=transcript|length=17160bp|location=Sequence derived from alignment at sc0000045:502764..519923+ (Clytia hemisphaerica)
ATAATCATCCATCGTATTGGTGAGATTACCCAGTTTTTTCACAATATTAC
AGTAGTCAATTCTTTATGACCCTGAGGTTGTTGGGTAAAACTTGCATCAG
TTGAGGCTAACATACATAACACATAATATAaaacaagccgtatatgtata
aaagttgcgaagcgatccagagcctccctcaattcgcaagttgcaagcaa
aacatcTTAGACACACAAACAATGTATATTCAACAACATTTTTGCAGTTT
TCCTTTACATTCGCTCTAGTCTTTCCGAATATAAAAATGACATCTGTAGT
CAGTGTAGTATTATCTCTCATTGATGAAAAATGAAGCTTCAaccgttcta
tttttcattttctaaaataaatagcaaaaagtttaaagaaacaacaatat
aagaagtaagatgaaaacactaacAAACTCAGGGCATTTTgagtttataa
aataaaaactaactgtacccttataatcataaaggttggtgagtccagtc
aaaacacagatttNtaaaataaaaacaaactgtacccttataatcataaa
ggttggtgagtccagtcaaaacacagatttgatctgtagcgtcacgcttc
acctttaTAAAAAGGAGGATATCATAAAATGaaccaaggaaaatttcatg
attttaggagggaaaaaaatcttttgggaaacatttttgtaatctgaaag
aatgcccAAAGGGAAAAAAAACGTATGCGGAAGAAAACTTAAAGgcgaca
acaaaagttttccatatgTGACAAAACGTCTAATCGGGATTGGGATcgtc
taatagaccttttttcaaagaggccaccctgttgaataattatgtagtcc
agcagaaaaacaatgataaaaccatgcataattattacaatatgcatgat
acagtaattatgcaagtctctatcattgtttttatggctggactacataa
ttattcaacaggacgtcctctttgaaaaaaggtctatatcgacatgcgtc
ttctaatttcgacatagctgtaggctggtcttcgaaataaaaaatcaaac
ataaacaaatacataccaaagttatcaatcaatcacNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTagtcacta
aaaaactaattagcatgctttcaacgaagatgcccaaatcacaacaacat
tttgcacgcgaggaattttttagtagaccttttaccgttaaccgaaaata
attaaaagaacccggtttccttatgaatttgaaaagggaatGGACACGTG
TGCTAGGTGCGGTGCCTAGAGAAGTTTTACGcggcctcttagcgcctaga
gcgcgtgcttgcaataaacaataaggacggggaaaccaggtcgactagAC
GCGCAAATTACtcttatcacgtgacttgaagcgtaattgcctaataaagt
tgtaaaattttaatgatggacacgagaaagttacgaggaagtttgcatac
GTTTCAtgtgttgtgtaaaattgcttataatttggctgcttatttttaaa
ttgaatgaattgcaatgtttaccactggacaatctctacaccggacttaa
gaaaGTGTTGGAGagggatatttttttccaccggacaatcaaaacaccgg
acatgaccagtccggtgtgCATCCAgcgtttcttaattttttgtttcata
aatgtcaggcgtccaaaattccctgtatgcaacaccggactgacaccgga
cttattgcgtccggtgtaacGAAAGGTTACTTTTTGCCACCAGaaaaata
caccggacagtccggtgcgtcggcagggtccttaagaatgataccaagaa
tttcaatcTTGCATATTCATAACCTGGCAGCTCAAAATATGGCAATGATG
GGTATGTTTCTAATGGGGCATCAGAGAACGtcatagaaataaataagtGT
TTCATCACATTTATAACTGGATCATTTTCAGCACTATTTCATTTCATATT
GACAAACAAACTTCCGAAAAAGGCATCAACTGAATACAATGCTTGaataa
cagaattgaaaaaacacACATTTCTACCAAAATTGGTAAGCCCTGTTGTT
GGACAAATTCTGTCTGGAGAAGCTGACATATtattaaaataatcaatttt
gcaGTACAGTAAACACGGCtagcaaaaaataattgattcGGTTGAATGGC
AAACAAAAGTTGCTTCAATATATggtatcttttaaacagaagGGCAAGCA
AGGAGGATATACTCGAAGACCAAATGTAAAAAATGAGAAGTAATTTGTAG
cacaataaattttaaaattgacttcCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATGACAACGCATCTGTAGAACCAATCAGTGTCAAGATATCTCTATCGCCG
TGACGTCAAACAGGATAGGGAGCATAATGGcatcactttcgttttgatat
aatttcaaatataacaatttactataacggaggtaatttgttttatcatt
tccCGGGATATTCTTCACGCTTGTTATCTCCTAAATATTGACGTCACGGG
TCACAGAGGGTTGACTCGTTCTTCGTATCATTCTGACGTATACGTCAAAT
TTGATATGACGGAGGTAATTTGAGTTAGCATTTCGCTGAATATCCTTTGT
ATTTTATCTCCTTTATATTTTGGTATCGCGCAACTCGGAGATTAGAAACG
TTTTTCCCATCTCATGCCTTATAGATGGTTGAAAGAATGgaaagttaaag
gtacgcacacacgatagcaaaactgcttcgctcatgtacattcgcttcgc
aataatagccctcaaatgaataatGACCTGGCTTACGACCCTGCCGACTC
CCTGGACAGTCCGGTGTATTTGTTTCCCGCGTCCGCGACTGGTGTCATTa
gaatacaaagttaaatcaaaacgaGTAACCAAGACTCTAAGCTAATAgta
taattttgactttaatAAAAGATGTATACTATTAGCTTTATTAGTTGGCG
TTGCACAAacaaactagccgtattgtgtAAGGGTTGCAAAGcaatccaga
ctccacctcaattcgcaagttgctagcaaaataagagactctctaaaaat
ccctccttctgataaagccgctatagagacggGGTCGTAAGAGCCGATgg
aatttaatgttatgtttaccGTAAGCCGCTCGCGTGTTCAAAAACCTGCC
GCatcaagttgtcattatttgccATTTTCTCGAAAAGTTGTAATTATTTT
TCCTCCCACTTGAGCAGAGAACAAGAATTTTCGAAgttgatatcaaaaca
aacggcTCGTGGCTTTTTTAGATTGTTAACAACCCGAACGGCCCTCTAGT
AGTCTTTACcgtgtgaatttaattttgtcatattgtggagataacattat
ataattctctagcgggaagaaaaagatttatctcTTTAAGCTCGTACAAA
CGGGGTAAccaaaagaatcaataaaaacacgAGAGTTCTGGAGACACAAG
AGGAAacgaaaaatctggtaaaaataaatgtttatgggaaaatgatgaat
aatgaataatgaaaacttggccgcatcgaattctgaaaatcgtcattacg
gtaaacatatcattaatttccatcagccttaatgccccaaacacattaca
taatccacggcggcacaacacccgccacTGCCCTGCGCATcgctcttttg
ttttctttctagttattctagtgtaaacgatgccttaataaaatcgaacg
atactcgtcgaacgatcgaacatttttattcaaatcacgaatcgtctgtc
gaaatcatcacaaaacattaaaataaaacaaaaacaaaaatgtacaaaga
tggcttgttggttcttcagcagttttgatttatttcttgacaaattcgac
aaatttgattacctccgactttacttctttatcatagaatatccacttgg
ttttgcaaggtaagtttcgttcactaaaagagcactcctcccgcacacgc
gacttgcaaaaacctctcattgattgaccttatttgatacttgatacttg
ctgttaaaagtcaagggatgatgaagatcctttctgtcaccgttcaaact
attttttttccatttaacatcaaaataaacattaaaaaccgaAGATGTGT
GCCGCCCGcacggcaatttgatcaacttcagattctaagtccgtgtttcg
gcttccggtaattttgttgctgttcaccctagggtacaccattttaaaac
ggcatttttcgcagtcctagctaccaaaccgagaaagttttcgtggcttc
aagccaaaccattcaaggtcattttgatNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatatagcaaattttatagc
aaattttcgcttgggatagaagttaaaggtacgtgcacaatatagcaaaa
ctgcttcgctcataaattcgctttgCAAAAAAACATACTTACGggacaat
cacaaatatcttcgtttcgcatCGCCCGACCAATTcctgaaaattgagta
aaattgagTCGGACAGTTGGTAAATTCTTCgagctttttgttttgatgac
gtttcctttgctcaaaaattttattattgccaatttttgtgagcgatttc
tagcgcattcgcagcattttaactttgtttatcattacacgtGCCATtat
gtgtcaaaagttacagTGTTTAAAACTTCATAATCTGAAGCCACGCAAAA
CATACACGCGACTGGACCTCCTGCTGCCTCAGTTAACGCCCTTTTACCTT
TTACCGCCTCACagaccaattttaagaaaacccgaaaatttttactacca
accgaccgaccgactcactttttagatacAACGAGGAcacgaaatgaaga
tatttgtgattgctgcCTTACGTTACATTGGGTGAATGAAGACTTTTGAG
TTTTGTATGATAATTCCCAAGAGAAGgcagtaaaaatattttgtcatcaA
AGGCAAAAAAATAACATCTACTACGTTATCCCTAAGAGCAGTTAAAAATG
ACaaactttttctctttgtttggaAGGAATGtgttattttatcaaaaaat
cagaaacaacAAAATGTTGTTATGATCGATCGGACATATATACAAACAAG
GCGAcgatcaaaaatatgttccatttgggtcctaaaacatcttcaaatcc
agtcggtcggtcggtcggtagtaaattttgttggatttttaagatctagt
aaatcccgatgaatcaagtcggcaatcaacagaatcttatgctgtcatct
ttaatttgccaaactaaatgtgCGCGCGCATGTGTTAACCTTAAAGCAGC
CCTTATTTTCGGCTCCCAGGGTATTggcagtgtagctggaacctcgatat
tccaggattagaaaaagctatacttgttatcttttttctttaactgttta
aagaatcaacaaaccatcaacatcgataaattacacacattttacttaga
aacttttaaaattatctgccattatgactttcttgaagccgtttcgaaat
gaatcaatcgggttatgtatcggaatccttatgggagttcttttccgaaa
tttgtaaaatagctaaggggtcactcacatatcgatttttcCTACAACTA
ACGTCATTGTGGCGCTATTTGAAGAACCCCCCACCCCCCTTTCTTAGCGT
CATTTACATAAATATAccaaaaattgatgaaagtaatttttcttaACTCt
attaggcggtcatcgaaaaattgttctattcgcgtcacccgcccgcatca
aattttctgctgattttccggtgcggagatgcgggaaaaaatctgggaaa
agcaactttgttcttttaaagtatatcttttttctcaattgctctgacga
ccatcgaaaaattgttttgctcgcgttaccacctgcccctgagttactgg
cgtgatcaaaaaacccgggaatgtttttgaccgcccgtccgcccgcatac
atttttaacacccgttgcgacgcgaacagagcatttttttgaTGACCGCC
TTACAGATATTGATTTCCAGCCACATTGATTTTTGTGCTTCGTTTCGCAC
GGTTTTAAAACAAGTGGTTTTGACTTATGACTTTCACATTTGTTGGCTCG
TTGTTTTGTCATATTTATGTAGACGGTCCGTCAGCGCGGCCCTTGTATAT
CAAAATACGGCCCATCTATTTTTTATTGCGATATCTCTGTTTTTATGACT
AGGGAGATAATAAAATATTCCTACAAACATAAAGAAGGGTTTTGGATATC
ATCTCTGTTATATTTTATGCGTTTGAATTAAGATGGCAGGTGTAGCGAAA
GATGGAATACGTAATGTTACAGGTTTGAAAATCGATATTCTgttgaaatt
tcttagcgtcataGGCTCTGACCCCCCACCCCCTTGCGTCACAATGACGT
TAGTTGCAGGAAACATCGATATGTGGGTGACCcctcggcaaaaaaacttt
tcctgggggTTTGAGGAACAACAGAACTGcgatcatttgttttttattta
accagatatttaaattcgggctcaaaaatactcaaataaataagttaata
atattgaatatactatttgtatctctcagaaaataaacacttacagaacg
acatcgtttatcatttggaatacccccgtatttggaccattctattgttg
acacaaaatagggcggaaactaagtagcaccctcagtgcaagatagCGTC
ctgccaaaatgcgtatcaaagattaatgctgtgaAAGCGCTATATTGTTA
ACTtaactctcaagcaaaaaaatgcgccgcaaaacttctaaagggattca
tgaaaaaataacccggcgctttttaatgaaatcaacattttcaaaaactt
tgagaaattgcctaaaatttgagccatagatgaaagaatttgagccaagc
caaccttgaaaactaatttgaaaatcaacttcccaagaaaaatatctacg
ggggaggcggaacccacctagatccgcgcactgccggataggctatttcc
cggaaattttgccggacctcaaacagtgacccatttacatgtgcagaatt
atttttactttagcgtataaacaagaccttaaaaatcgaagcgctgtcac
GGGaatgggaattgaatgacaaaatttggttggttgatattctggctgct
gcacgtttgcAATCTGTCATTTTATCTCAtttaaagttttcaagttttaa
ttgattgtcttgggatcttgaacttgattcaggtaactctcatccttgtt
gttgcaaatacatcctgtagatgactggtgttgttttttctgaaggtgaa
agcttgatttcctagtgtgactaactgctaaAGAGAGATGATGTCTTAGA
ATACTAAGGATGACCAATTCAATTTGTTGGGTGAATTGCACCAAATTTGT
ACCGTGTCCTATCCGTCACACTTAATTTTCAAGTTTGTTTAAATGaccat
ttttttttctaaaaggtAGTATAATTATGTCTAGTTACTGGAATGAATga
ccaaaaacaaaatttttctcttaATATGATGTTTTATGCCGTATTGTGCT
GGGGGTCATTTCCTTACAGttatagacttaaacttgttTATCAAGATTAC
AGGAATTCAagtacgggccgattttactttcgttttcagtggcCTTTCAT
tctcgatttcaagccaacatcttagcaacggggtgatTGCCCATAGTTAA
ggggacctacctggaggtcctataaattaaccttcgtccgtccgtccgtc
cgttaccagcttttctcgagattggctcattagttttttctgatttttgg
cacaacgatgcaaaatggtaatgcccaaaatgtgacatagcccaattttc
gaaaaaaaattcatttctagccgaaaatgccagaaatatgccggaaaaca
gggctttttagcattttctcgagatttcatcatcagttttttcagatttt
ttgcacaaagatgcgtattagcaatgcctaaaacatggctgagtccgatt
tttaagaaaagttttttttccagccgaaaatgccggaaatatgccggaaa
tcgccgtttttgcagatttccatcggactttttccttctattttgttgtt
tttccacacaaaaacattattaataacaatccacaccatcaagcatggtt
caattgtcaatataaCTAATTTTTGTAGCTgtaactttctaaaaatcgcc
ggaacagccgattttagccggaaaaacggtattacttgaatttctcaaac
tgtactttttatttttttatgaaattttgcacactgatgtaaaatgacaa
tatatacctaaaaagtgacggagcccgatttttaaaaaacatttttttgg
ccaaaaatgttggaaatatgctggaaaaactgcttttttggcattttctc
gagattttattattagtcttttctgattttttgctcaaagatgtgtATTA
ACAATACCCAAAACATGACTGGGtgcgatttttgagaaaaatttttttcc
ggccggaaatgtgccggaaatcgctgtttttctggattttcattggactt
tttccttataattggttgttgtTTCATTCAAAAGCAtttgttgtgcgcag
atttgtaatacttgctcagatttgtaatacctgcgcagatttgtaatact
ttctgcgcagatttgtaatacctgcgcagatttgtaataaactttgcgca
aatttgtaatacttgagctgcgcagaaatgtaatacttctctgcgcagat
ttgtaatttgaattgatattttcattggtaACCAAATTCTATTATGCGaa
caaaattcattaaaaatgacTTAGAAAATAATACCCAAATAAAGTTGTGA
TTATTGAGCACACCGAAAAATAATCAAtcaatatttcttttctaagcagt
gcttttataagaaatttatctggtaatataaaaattgtttacGAGAATAA
TAGCgcggacataattttttataagaactgcttttataagaaactaatca
ataactcgtaaaatgaaaattatttgttgtcggtaattgtttatttcgaa
gtaaacaaggtacgaagaataacatgaacatatttattttttataagcac
tgcttttataagaaactaatttCCTTTAGATCAAAAgatattgattagtt
tcttataaagttgatacttataagaaaaatgaaaatacttaaaataagca
aaatcccttatttgtattgaaagaaccaagcgccgaaagccaatttccat
tagattaaaagatattgattcgtttcttataaagttgattcttataagga
aattaaaaatattgaaattattcaaaatcccatgtttgtattgaaagaac
caactgccaaaagccaatttccattagatttaaaaagatattgattcgtt
tcttataaagttgatgcttataaggaaaatgaaattattaaaattattcC
CAATCCCATGTTtgcattgaaagaaccaactgccaaaagccaatttccat
tagattaaaagatattgattcgtttcttataaagttaatgttcATACAAA
AGATCTACAACctttgtgtttttttctgattattttctaagtcttttttc
gaaacttttcttcGTGGAAAACATATGCCCTCGAAGTAAAAATCTAAgtt
ccaaattacaaatctgtgcagagaagtattacatttctgcgcagctcaag
tattacaaatttgcgcaaagtttattacaaatctgcgcaggtattacaaa
tctgcgcagaaagtattacaaatttgcgcaggtattacaaatctgcgcaa
gtattacaaatctgcgcacaacagcATTATTAATGGACATGTTCATTAAA
AAAGGCAAGTTTTTGAGGTTTCTGTGACATTTGATGTCTATGTTACAAGA
TTATCCATTTTAGTGGTTTACCATTTCTTATCAAAGGTCAGATTATTCTG
ATGGTTAAGGTGAAATGTTCTTCTTGGATAATTTGGTAACAGAATTTTTT
CCCCTTTAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTCAAAAGCTACCTTGAAAAAGCTTGCATAATTAAC
TGTCATTCATACCTCTTCACATGTCTCACCATATCTATAATACTTTTAAA
AGCTCATAGGTTTTTTTCAGAGAGAAGTTTTTAAAAGTAGAAACCTTAAG
TTTCGCAAAAGAAAAGGTacaaaaaaatgatataataggcactttttgga
taattttgtaACGTGATGGTTTTGATTAGCAAGAGGAACGCGATATGATA
AAACTTCGttaaattttcacttttatCACTAGCTGCTTGTTACTTTGTTA
TCCAAATAGTACTAATTTAAGAATGGGCTTTCAGAATTTATAGTACAATT
TATAATTCTCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCATAGACTTTGAGAcaatatttat
tgatttattaacAAAAAACGATTTTTCCAACTTTTTGACATGTCACAGGA
CTTGCCTTTTTTAATGAACATGTcctaatagcaatgcccaccatcaagca
tgtttcaatttttaataaaattgatttttgaagccagaactatttaaaaa
ttgcCGGGACAATCTATTtttgccggaacaacctattttcgccagaaaga
cagtatttcttgaatttctcgagctgtactttattttttttttttgaaat
tttgcacactgatgcaatatgacaatacctaaaatgtgacgggaaaaaca
tttttttccggccgaaaatgctggaaatatgccagaaaaaccatttttta
cATCTTCTgcaattttcatctttagttttttctgattttttgcagaaaga
tgggtattcgcaatgctcaaaacatggccgagtttaatttttgagaaatt
tttttttccggttgaaaatgccagaaattgccgtttttgcagattttcat
tagatttttccttgtatttctatgtttatcacacaaaaacattattgata
acaatgctcactatcaagcatgattcaattgtcaataaaactgatttttg
cgaccagaattttctatttattttttccatacaacccttccctctccccc
catcgttatgcatttttgctaagcgctatattttctgactgatttttttc
tcctcgcattgctatctaactttcatcatcaggtagatccattcagcatc
taggtTGTTTCTTAGCTCTTTCTTAGGGGGGACCTGCATTAGTTTATGTA
ACTCTGGAGGCTAAATAACACTtcttaaatatttttccttactgttggtt
tttgatttctctaaacctttatgttttcattcaaattgtgatctgatcct
taaaatgcaaaaatgaagacattctattgcattttctaaaagtgcacaca
catgtaaatagagctttgtgaatgccataaaatttttctcctatactggg
acctaaaattttatcaggctggggggactttgttctcaggggggacctaa
attagGCGTGGGGACCTAGGACCCCAGTCAGAGCCATGGGAGGgccggga
agcaatcagtagaagagaccactttcgtttttgttgcagactttgatata
aacttctcacagggattacttgtcaatgtgttgtgtcaacttgtctgcat
tgtattgttgtaaagggaaagataaaagaggtagtTTCTAATCCTTagga
tataggagtttaagcttagactgaCAGGTCCTTTTTGCAAATGATTTTAT
TGCAGTCTAGGTTAATTGTAGCAATCGAGAAGTAAAGAGAGACAAGTAAC
GTAATTGCTCAAGTAGTTATTAACACGATTCAGTTTTAGGGAAAAGTCTT
CGCCCAAATGCCTGAAGCTTTATATCAAGTATGTGCACAGGAACCGGATA
CTATCATGTACTTCACAGTTAACCACCATAATCATAGTAAATCAGCGGTT
AACCACCGTAATCATAGTAAATCAGCAGTTAACCACCGTAATCATAGCAA
ATCAACGGTTATCCACCGTAATTATTTATCTAGTAAACGGTTAACCCTTT
TTGCAAAAAGAACCTACACCACCTAAAAATTAAAGACTATTTCGTAAGTA
TTATTACAAAGACAAATGGTGTAAGTAAGTGAGTCTGCATCTTTAGTAGA
TGTCCTGGCTGGGGATTGAACCAAGACCTTTGTCTGATGATCTGAAGGTA
GACCATCCGTGCTCTACCTTTGTCAGACCTTTATGACATATTACAGATAT
CTGTAGCTCTTGATGTGTATGAGTTagattttcataaaaagattttattc
CCTGGGAAAATGTCAGGTTGTCTGTCACTAAGAACCGACCTTCAATTAAA
CTAACAATGAAATAGTGAAGGTCTGTGAAGGTGGTAATTTTTGGACAAAG
TTGGAATTATTCAAGTTATCCCAATATTGATATGAACATATTACGGTTGA
ATTAAATTTGAGCTTGGGATTTATTTGCTTTTCATGCAATATATCTTCTC
TCTTTAGATTAATGAAAAGtttaaacataaaaatttgTCAGTGAAAAATG
GGAGATGAAGAAAGGGCAAACAATTTCTATATGGAAGCTCAAAAGAAGAT
GGAGTCTACAAAAGGCTTCATGAGCAGAATGTTCGGGTAAGTCATATTTT
ATATCAAAGGAAAATAATATGCTCAATTTACTAACATTACCATcaaaact
tttttactttttctctgCCTTTGAAATTCTAAACAACTGTTTTTGTAATG
TCAGAACGATACTTTTCATCATATCATATTCAAGGGGCTTCTTCATTCAC
TTTGAAGAAAGAAGTGAAGAAATAAGTGAAAACGTGGGGGACTGTGGATG
ACATGAAAATCTTTCAACACCTTTCAAAGCCtttcaaaaccttgaaaatg
ataattttgataGTATGATAGAATGTGTTTAATAATctaaaaaaagatta
tttttgcATAAATATGCTCACAACAGTCTTTGTACCAAACGGTGGTAAGA
AGGTGCTTGGAAAAATCTCTGATATGAAAACaacttgaaaaaagaattga
ttCACGTCcaacaaaaccttgaaaatctgATTAATTTGGTCAAGAAACCC
TTGGAAACTTGAAACTgatgaaaaattttgttttgacattcttctatggt
ttgttattttttaagttagtttaaaaaagttttctaGTTATAGTGTTTTG
CTTATCTTTTATAGAGCTCATTCCAAAATAGAAGATGCTTGTGACCTCTT
TCAAAGAGCTGGAAACGCTTATAAGATGGCCAAAAAGTGGAGTGGTAATA
attttgtttccattttttACTCTGTGTCTTTTGAAAGCTTCATTATATAA
TTGGAAACTGAAGTTGAATCTTTTGTACACACATCAGGCAGATGGACatt
ttgtgtgtgtgtgttctTCTTATATTGACTGGAAAAAGGgtttcttttaa
acaaatttcattttctacagCTGCTGGAAATGCATTCTGCGAGCTGGCCA
AGATTCAGTTGAATCAGCTTCAAAGTAAACATGAAGCTGCCACGCAGTAT
GTGGAAGCTGCAAATTGTTACCGCAAATCTGATCACCAAGGTAACACTAA
CATACTACCTTTGAAAATCTGTGCTGACGTcagtgtttaaaaaaattgtc
agtCTTTGATGGATTTACATCTCATCGAAGAAGATATTAAGAATCTAGGA
TTATTTCTTTGGAATATTATATTATGTCAGAGGTGAATAACTTTGCTTTG
ACTGCTGAACGCTGGTGGATCAATTTGATTTGTTCTATGACACTCGATTC
GAATTAATACTCTTTAGTATTTTGATAATAGACTTGAAGTAAGCTTGGGC
CCAATGCAATACTTTATCAACAATAATCCCTTAAATTAATAAAGTCAATA
TTACCTTACTATCACCTTCACCTTGTAATATTTTTGTTCATAGAGTAATC
TCCataattaaaaatgtttatttgaTATACGTTTAATTTTACAGAGGCAA
TCAATTGTTTAGAATTAGCAGTAGAAATCTTCACAGATATGGTATGTTTT
TGTTAAGTTAGCAGGTATCAAGTAATGTCTATAAAATTAAAACTCGAACT
GAAATTTGCTTCAATTTTATTCCAGTGACCTTATCCACTTTTTGTCCTTT
AAATTACCtatgtttgttcgttcgttcgtctgttcttctgttaccagctt
ttctcggaattagctcattaactttttctgcttttttgcacagtgatgca
aaatggtgattcccAAAAAGACGAAGCCCAATTTTCGACATTATATCGGc
caaaaatgccagaaatatgccggaaaaactggttttttgttttctcacac
aaaaacattattgataacaatgcccaccatcaagcatgattacAATTGTC
AATAATACTGATTTTTGCacccggaactttctatttctttttccctactc
cccttccctctctccccatcaacaatcaatgattaAATTTAaggcgttat
gcattttcgctaaaccctatattttctgactgattattttcatttttctc
cttattgttatctaactttcatcatcaggtaggtccattcagcgtCTAGC
TTGTTTCGTTTtaaatcattcttttttttctcatagGGAAGATTTGCCAT
AGCTGCAAAGCATCATGTTACGATAGCTGAAATTTATGAATCCAACTTGA
TGAATGTAGATATGGTATGTATGACATACGCCATTCTATCTGCAAAGTAT
CGAAGAAGATAACTTTTAAGACCATTTTAtctactattttttgaaaattt
gaattttaaccaTTTTCCAAAAGAGTTGAATTTTGGTAACTTTTTTTTAG
GCGATAACACACTTCACACAAGCAGCCGACTATTATAAAGGAGAAGAATC
TTCAAGGTGA

Coding sequence (CDS) from alignment at sc0000045:502764..519923+

>TCONS_00004511 ID=TCONS_00004511|Name=TCONS_00004511|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000045:502764..519923+ (Clytia hemisphaerica)
ATGGGAGATGAAGAAAGGGCAAACAATTTCTATATGGAAGCTCAAAAGAA
GATGGAGTCTACAAAAGGCTTCATGAGCAGAATGTTCGGAGCTCATTCCA
AAATAGAAGATGCTTGTGACCTCTTTCAAAGAGCTGGAAACGCTTATAAG
ATGGCCAAAAAGTGGAGTGCTGCTGGAAATGCATTCTGCGAGCTGGCCAA
GATTCAGTTGAATCAGCTTCAAAGTAAACATGAAGCTGCCACGCAGTATG
TGGAAGCTGCAAATTGTTACCGCAAATCTGATCACCAAGAGGCAATCAAT
TGTTTAGAATTAGCAGTAGAAATCTTCACAGATATGGGAAGATTTGCCAT
AGCTGCAAAGCATCATGTTACGATAGCTGAAATTTATGAATCCAACTTGA
TGAATGTAGATATGGCGATAACACACTTCACACAAGCAGCCGACTATTAT
AAAGGAGAAGAATCTTCAAGGTGAATGGGAGATGAAGAAAGGGCAAACAA
TTTCTATATGGAAGCTCAAAAGAAGATGGAGTCTACAAAAGGCTTCATGA
GCAGAATGTTCGGAGCTCATTCCAAAATAGAAGATGCTTGTGACCTCTTT
CAAAGAGCTGGAAACGCTTATAAGATGGCCAAAAAGTGGAGTGCTGCTGG
AAATGCATTCTGCGAGCTGGCCAAGATTCAGTTGAATCAGCTTCAAAGTA
AACATGAAGCTGCCACGCAGTATGTGGAAGCTGCAAATTGTTACCGCAAA
TCTGATCACCAAGAGGCAATCAATTGTTTAGAATTAGCAGTAGAAATCTT
CACAGATATGGGAAGATTTGCCATAGCTGCAAAGCATCATGTTACGATAG
CTGAAATTTATGAATCCAACTTGATGAATGTAGATATGGCGATAACACAC
TTCACACAAGCAGCCGACTATTATAAAGGAGAAGAATCTTCAAGGTGAAT
GGGAGATGAAGAAAGGGCAAACAATTTCTATATGGAAGCTCAAAAGAAGA
TGGAGTCTACAAAAGGCTTCATGAGCAGAATGTTCGGAGCTCATTCCAAA
ATAGAAGATGCTTGTGACCTCTTTCAAAGAGCTGGAAACGCTTATAAGAT
GGCCAAAAAGTGGAGTGCTGCTGGAAATGCATTCTGCGAGCTGGCCAAGA
TTCAGTTGAATCAGCTTCAAAGTAAACATGAAGCTGCCACGCAGTATGTG
GAAGCTGCAAATTGTTACCGCAAATCTGATCACCAAGAGGCAATCAATTG
TTTAGAATTAGCAGTAGAAATCTTCACAGATATGGGAAGATTTGCCATAG
CTGCAAAGCATCATGTTACGATAGCTGAAATTTATGAATCCAACTTGATG
AATGTAGATATGGCGATAACACACTTCACACAAGCAGCCGACTATTATAA
AGGAGAAGAATCTTCAAGGTGAATGGGAGATGAAGAAAGGGCAAACAATT
TCTATATGGAAGCTCAAAAGAAGATGGAGTCTACAAAAGGCTTCATGAGC
AGAATGTTCGGAGCTCATTCCAAAATAGAAGATGCTTGTGACCTCTTTCA
AAGAGCTGGAAACGCTTATAAGATGGCCAAAAAGTGGAGTGCTGCTGGAA
ATGCATTCTGCGAGCTGGCCAAGATTCAGTTGAATCAGCTTCAAAGTAAA
CATGAAGCTGCCACGCAGTATGTGGAAGCTGCAAATTGTTACCGCAAATC
TGATCACCAAGAGGCAATCAATTGTTTAGAATTAGCAGTAGAAATCTTCA
CAGATATGGGAAGATTTGCCATAGCTGCAAAGCATCATGTTACGATAGCT
GAAATTTATGAATCCAACTTGATGAATGTAGATATGGCGATAACACACTT
CACACAAGCAGCCGACTATTATAAAGGAGAAGAATCTTCAAGGTGAATGG
GAGATGAAGAAAGGGCAAACAATTTCTATATGGAAGCTCAAAAGAAGATG
GAGTCTACAAAAGGCTTCATGAGCAGAATGTTCGGAGCTCATTCCAAAAT
AGAAGATGCTTGTGACCTCTTTCAAAGAGCTGGAAACGCTTATAAGATGG
CCAAAAAGTGGAGTGCTGCTGGAAATGCATTCTGCGAGCTGGCCAAGATT
CAGTTGAATCAGCTTCAAAGTAAACATGAAGCTGCCACGCAGTATGTGGA
AGCTGCAAATTGTTACCGCAAATCTGATCACCAAGAGGCAATCAATTGTT
TAGAATTAGCAGTAGAAATCTTCACAGATATGGGAAGATTTGCCATAGCT
GCAAAGCATCATGTTACGATAGCTGAAATTTATGAATCCAACTTGATGAA
TGTAGATATGGCGATAACACACTTCACACAAGCAGCCGACTATTATAAAG
GAGAAGAATCTTCAAGGTGAATGGGAGATGAAGAAAGGGCAAACAATTTC
TATATGGAAGCTCAAAAGAAGATGGAGTCTACAAAAGGCTTCATGAGCAG
AATGTTCGGAGCTCATTCCAAAATAGAAGATGCTTGTGACCTCTTTCAAA
GAGCTGGAAACGCTTATAAGATGGCCAAAAAGTGGAGTGCTGCTGGAAAT
GCATTCTGCGAGCTGGCCAAGATTCAGTTGAATCAGCTTCAAAGTAAACA
TGAAGCTGCCACGCAGTATGTGGAAGCTGCAAATTGTTACCGCAAATCTG
ATCACCAAGAGGCAATCAATTGTTTAGAATTAGCAGTAGAAATCTTCACA
GATATGGGAAGATTTGCCATAGCTGCAAAGCATCATGTTACGATAGCTGA
AATTTATGAATCCAACTTGATGAATGTAGATATGGCGATAACACACTTCA
CACAAGCAGCCGACTATTATAAAGGAGAAGAATCTTCAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002537XLOC_002537Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004511-proteinTCONS_00004511-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004511-exon-sc0000045-1491911889:502764..502782TCONS_00004511-exon-sc0000045-1491911889:502764..502782Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:502764..502782TCONS_00004511-exon-sc0000045-1510915933:502764..502782Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:502764..502782TCONS_00004511-exon-sc0000045-1575043694:502764..502782Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1491911889:517521..517649TCONS_00004511-exon-sc0000045-1491911889:517521..517649Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:517521..517649TCONS_00004511-exon-sc0000045-1510915933:517521..517649Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:517521..517649TCONS_00004511-exon-sc0000045-1575043694:517521..517649Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1491911889:518228..518307TCONS_00004511-exon-sc0000045-1491911889:518228..518307Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:518228..518307TCONS_00004511-exon-sc0000045-1510915933:518228..518307Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:518228..518307TCONS_00004511-exon-sc0000045-1575043694:518228..518307Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1491911889:518484..518603TCONS_00004511-exon-sc0000045-1491911889:518484..518603Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:518484..518603TCONS_00004511-exon-sc0000045-1510915933:518484..518603Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:518484..518603TCONS_00004511-exon-sc0000045-1575043694:518484..518603Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1491911889:519008..519054TCONS_00004511-exon-sc0000045-1491911889:519008..519054Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:519008..519054TCONS_00004511-exon-sc0000045-1510915933:519008..519054Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:519008..519054TCONS_00004511-exon-sc0000045-1575043694:519008..519054Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1491911889:519650..519727TCONS_00004511-exon-sc0000045-1491911889:519650..519727Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:519650..519727TCONS_00004511-exon-sc0000045-1510915933:519650..519727Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:519650..519727TCONS_00004511-exon-sc0000045-1575043694:519650..519727Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1491911889:519864..519923TCONS_00004511-exon-sc0000045-1491911889:519864..519923Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1510915933:519864..519923TCONS_00004511-exon-sc0000045-1510915933:519864..519923Clytia hemisphaericaexon
TCONS_00004511-exon-sc0000045-1575043694:519864..519923TCONS_00004511-exon-sc0000045-1575043694:519864..519923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:502764..519923 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.97	70.4741	53.4356	50.9442	51.0924	39.207	67.4329	70.9058	84.891	84.8068	71.3327	76.6451	63.2845	58.1587	55.773	60.2533	73.6518	72.8789	43.8828	56.5172	63.0985	56.7004	63.7792	65.6321	50.9054	57.2882	69.9676	48.0717	66.3584	60.5507
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000744NSF_attach
IPR011990TPR-like_helical_dom
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00004511 vs. Swiss-Prot (Human)
Match: SNAB (Beta-soluble NSF attachment protein OS=Homo sapiens GN=NAPB PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.750e-61
Identity = 87/155 (56.13%), Postives = 124/155 (80.00%), Query Frame = 3 
Query:   63 GDEERANNFYMEAQKKMESTKGFMSRMFGAHSKIEDACDLFQRAGNAYKMAKKWSAAGNAFCELAKIQLNQLQSKHEAATQYVEAANCYRKSDHQEAINCLELAVEIFTDMGRFAIAAKHHVTIAEIYESNLMNVDMAITHFTQAADYYKGEESS 527
            G E  A     EA+K+++++  F+  +FG +++IE+AC+++ RA N +KMAK WSAAGNAFC+ AK+ + QLQSKH++AT +V+A N Y+K+D QEAINCL  A++I+TDMGRF IAAKHH+TIAEIYE+ L++++ AI H+ Q+ADYYKGEES+
Sbjct:    5 GKEREAVQLMAEAEKRVKASHSFLRGLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHM-QLQSKHDSATSFVDAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSADYYKGEESN 158
The following BLAST results are available for this feature:
BLAST of TCONS_00004511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNAB4.750e-6156.13Beta-soluble NSF attachment protein OS=Homo sapien... [more]
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