TCONS_00004507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004507
Unique NameTCONS_00004507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004507 ID=TCONS_00004507|Name=TCONS_00004507|organism=Clytia hemisphaerica|type=transcript|length=2141bp
tttatttggaacctaagagtactacGATAAGCTATTTATAAATACCTATA
CATAAAAACAGCACCAAGGTAAAAAGTTAATTTACATTTGGAAAGTTACA
ACAATaaccacaaaaaaaattaacaacaaaCAATTCtcagatttcaaatt
aatgCAAACTAAAACAAAACAACGCGTAAAATCAACTTCGCAAGCGTAAA
TCGTAATATTTCATATAATTGATTTCCAAGACTGTTTCCTCTTGAATTGA
TTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTCGTCAAAAACATGTTT
aatttttacaaactttcacATTTCGCGATACTGGATTTCATAAAAAAGGC
AAGAAATCGcgaaattcgaaaatttaatccgattaaaacAACACACTACT
TCATTATATTTACTTCATTATATTATTCACATAATGTTTTGGGACTTTAA
CGACGGAACACCTCAGTCCCATTAACTTACAAGGAAGAGGTGTCTCGAAA
TTCCACTTATTCGTATCAATATCATAACTTTCAACTGTGTCAAGGTATTG
CCATGTGGAATCCCTACCACCTATAATGTAAATGGTATTTTCTGAGATTG
CATAGCCTGCTCTCCACCTGGCAACAGACGCTGAAGCCCCTTGTGTCCAA
GTGTCATGATCGATATTATAGATTTCAAGAGAATTGACACACTCTGAATT
ATAACCTCCACACACATAAATTTGATGACCATGAATGACGTTGGTTGCAC
CAGCTCTAGGGTTTGACATTTCTGCAACCATTCGCCACTCTCCATCGACA
CATCGCTCAACCGTTGCGCATTTCCAACCACCaattgaaaacaaaccata
CTGGTTGCTTCCTACAAAACCATGACTATATCTTGCTTGATTCATGTTTG
GAAATACTTTCCAGCATCTTGATTCATCATCGTAGAATTCAACACTATCT
AATGCATTATAATTCTCATCCAATCCACCACTAACAAAAAGTTTGTCCTG
ATAAACTGATATACCCAaggattttcttttaaaatgcaTTTGTCCCAAGC
CTCTCCATTTATTACTCATTGAGTTATAGTGCTCTGTTGTGTTCAAAGGA
CCTTTTCGACTATTAAATCCTCCTGCAACAAACAGATCATTCCCAATTGA
TACTGTTCCATGATCGTGTCGTGATGTTTGCATTGGTGCAAGATGGGCCC
AGTTGCATTCGTTTGGTAGAAATGCAAAAGAAGATACAAGGCAAGAGTTT
CCATCATATCCACCTGTTGTCATGATTACAGTTGAAGTGTCTAAACAGTG
TCGTGGTTGTAAATTCTCTTTACTAGCATCTAGGGTGGCTGAATCATCGA
CACACATTGCATCATTGGTAATCATCAATATGTTTTCAGGGGTACTCAGA
GAAAGTGAATAGAATCGAGATGTAAGCATATCAAAGCATTGCCCACTTAA
AAATCCAGTTCTTACACATTTGAAAACATCATTGAAATAATTAGATCTTT
GCTTCCAATCATGATCCAACCATTTGAGGTATGTGAGCAAAACAAGATCT
TCACTTTCAACCTGTATTCCATCACTTGATAGCACCTCTAAGATTGTATT
ATTCCGCATGCGAAGAAAGTTTTCATACttaattattttgtcaaaatttt
cttcaatcatTTTCATGCACTTTTCTTTCAATTCAAAGCATTGGAAATGG
GAAGCAATGTCAAAAATATCAAGAGAATTTGACAGCTGTAGAGCCTTCTC
CAAAAATCTGCAGCACTTTTGCTTCAAATTCAACATCATAAAATAACTCG
AGAAGGATAGAAAACCTTCAATGTTATGTTCATCAAGGGATATAAAACCT
GTGTATATGTAAGTGATAAATTCCTTCGATAAATCTGTTTCACCGTAGAT
TGTGGAAAGGTCAACAATACCTTCATTTGTTTCTTTCATGTTTGTCTGGA
ACATTGCAGCAAAAACTTCAGAAGCCGCTGAAAGTATGACTCGATGAGCC
AGGATCTCTTTACTCTTGAATTTAAGTAGCACATCTGTGAAATTTCCATC
AATTTGGTACTGAGATAAGCTGTTAAGCAAGCCTTCTCTGTGCTGCTTAT
CAAATTTTGATTCTACCAcggccgccatcttgaaaaggttt
Run BLAST on NCBI

transcript from alignment at sc0000045:472856..475292+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004507 ID=TCONS_00004507|Name=TCONS_00004507|organism=Clytia hemisphaerica|type=transcript|length=2437bp|location=Sequence derived from alignment at sc0000045:472856..475292+ (Clytia hemisphaerica)
tttatttggaacctaagagtactacGATAAGCTATTTATAAATACCTATA CATAAAAACAGCACCAAGGTAAAAAGTTAATTTACATTTGGAAAGTTACA ACAATaaccacaaaaaaaattaacaacaaaCAATTCtcagatttcaaatt aatgCAAACTAAAACAAAACAACGCGTAAAATCAACTTCGCAAGCGTAAA TCGTAATATTTCATATAATTGATTTCCAAGACTGTTTCCTCTTGAATTGA TTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTCGTCAAAAACATGTTT aatttttacaaactttcacATTTCGCGATACTGGATTTCATAAAAAAGGC AAGAAATCGcgaaattcgaaaatttaatccgattaaaacAACACACTACT TCATTATATTATTCACATAATGTTTTNATTTAACAACAAACATTTCtcag atttcaaattaatgCAAACTAAAACAAAACAACGCGTAAAATCAACTTCG CAAGCGTAAATCGTAATATTTCATATAATTGATTTCCAAGACTGTTTCCT CTTGAATTGATTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTCGTCAA AAACATGTTTaatttttacaaactttcacATTTCGCGATACTGGATTTCA TAAAAAAGGCAAGAAATCGcgaaattcgaaaatttaatccgattaaaacA ACACACTACTTCATTATATTATTCACATAATGTTTTGGGACTTTAACGAC GGAACACCTCAGTCCCATTAACTTACAAGGAAGAGGTGTCTCGAAATTCC ACTTATTCGTATCAATATCATAACTTTCAACTGTGTCAAGGTATTGCCAT GTGGAATCCCTACCACCTATAATGTAAATGGTATTTTCTGAGATTGCATA GCCTGCTCTCCACCTGGCAACAGACGCTGAAGCCCCTTGTGTCCAAGTGT CATGATCGATATTATAGATTTCAAGAGAATTGACACACTCTGAATTATAA CCTCCACACACATAAATTTGATGACCATGAATGACGTTGGTTGCACCAGC TCTAGGGTTTGACATTTCTGCAACCATTCGCCACTCTCCATCGACACATC GCTCAACCGTTGCGCATTTCCAACCACCaattgaaaacaaaccataCTGG TTGCTTCCTACAAAACCATGACTATATCTTGCTTGATTCATGTTTGGAAA TACTTTCCAGCATCTTGATTCATCATCGTAGAATTCAACACTATCTAATG CATTATAATTCTCATCCAATCCACCACTAACAAAAAGTTTGTCCTGATAA ACTGATATACCCAaggattttcttttaaaatgcaTTTGTCCCAAGCCTCT CCATTTATTACTCATTGAGTTATAGTGCTCTGTTGTGTTCAAAGGACCTT TTCGACTATTAAATCCTCCTGCAACAAACAGATCATTCCCAATTGATACT GTTCCATGATCGTGTCGTGATGTTTGCATTGGTGCAAGATGGGCCCAGTT GCATTCGTTTGGTAGAAATGCAAAAGAAGATACAAGGCAAGAGTTTCCAT CATATCCACCTGTTGTCATGATTACAGTTGAAGTGTCTAAACAGTGTCGT GGTTGTAAATTCTCTTTACTAGCATCTAGGGTGGCTGAATCATCGACACA CATTGCATCATTGGTAATCATCAATATGTTTTCAGGGGTACTCAGAGAAA GTGAATAGAATCGAGATGTAAGCATATCAAAGCATTGCCCACTTAAAAAT CCAGTTCTTACACATTTGAAAACATCATTGAAATAATTAGATCTTTGCTT CCAATCATGATCCAACCATTTGAGGTATGTGAGCAAAACAAGATCTTCAC TTTCAACCTGTATTCCATCACTTGATAGCACCTCTAAGATTGTATTATTC CGCATGCGAAGAAAGTTTTCATACttaattattttgtcaaaattttcttc aatcatTTTCATGCACTTTTCTTTCAATTCAAAGCATTGGAAATGGGAAG CAATGTCAAAAATATCAAGAGAATTTGACAGCTGTAGAGCCTTCTCCAAA AATCTGCAGCACTTTTGCTTCAAATTCAACATCATAAAATAACTCGAGAA GGATAGAAAACCTTCAATGTTATGTTCATCAAGGGATATAAAACCTGTGT ATATGTAAGTGATAAATTCCTTCGATAAATCTGTTTCACCGTAGATTGTG GAAAGGTCAACAATACCTTCATTTGTTTCTTTCATGTTTGTCTGGAACAT TGCAGCAAAAACTTCAGAAGCCGCTGAAAGTATGACTCGATGAGCCAGGA TCTCTTTACTCTTGAATTTAAGTAGCACATCTGTGAAATTTCCATCAATT TGGTACTGAGATAAGCTGTTAAGCAAGCCTTCTCTGTGCTGCTTATCAAA TTTTGATTCTACCAcggccgccatcttgaaaaggttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002535XLOC_002535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004507-exon-sc0000045-1491911889:472856..473265TCONS_00004507-exon-sc0000045-1491911889:472856..473265Clytia hemisphaericaexon
TCONS_00004507-exon-sc0000045-1510915933:472856..473265TCONS_00004507-exon-sc0000045-1510915933:472856..473265Clytia hemisphaericaexon
TCONS_00004507-exon-sc0000045-1575043694:472856..473265TCONS_00004507-exon-sc0000045-1575043694:472856..473265Clytia hemisphaericaexon
TCONS_00004507-exon-sc0000045-1491911889:473562..475292TCONS_00004507-exon-sc0000045-1491911889:473562..475292Clytia hemisphaericaexon
TCONS_00004507-exon-sc0000045-1510915933:473562..475292TCONS_00004507-exon-sc0000045-1510915933:473562..475292Clytia hemisphaericaexon
TCONS_00004507-exon-sc0000045-1575043694:473562..475292TCONS_00004507-exon-sc0000045-1575043694:473562..475292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:472856..475292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84543 2.63234 1.08117 1.26117 0.817206 0.579189 4.04901 2.89859 4.57698 3.75503 3.60357 3.73009 3.90638 3.23001 2.00386 2.6754 4.23215 5.53607 4.54828 4.47347 6.65356 6.36515 3.64661 4.52893 5.1682 4.6114 2.25604 1.60678 3.78609 4.1468
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006652Kelch_1
IPR011705BACK
IPR000210BTB/POZ_dom
IPR015915Kelch-typ_b-propeller
IPR017096BTB-kelch_protein
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00004507 vs. Swiss-Prot (Human)
Match: KLHL3 (Kelch-like protein 3 OS=Homo sapiens GN=KLHL3 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.860e-61
Identity = 160/552 (28.99%), Postives = 267/552 (48.37%), Query Frame = -2
Query:  497 LLNSLSQYQIDGNFTDVLLKFKSKEILAHRVILSAASEVFAAMFQTNMKETNEGIVDLSTIYGETDLSKEFITYIYTGFISLDEHNIEGFLSFSSYFMMLNLKQKCCRFLEKALQLSNSLDIFDIASHFQCFELKEKCMKMIEENFDKIIKYENFLRMRNNTILEVLSSDGIQVESEDLVLLTYLKWLDHDWKQRSNYFNDVFKCVRTGFLSGQCFDMLTSRFYSLSLSTPENILMITNDAMCVDDSATLDASKENL--------------QPRHCLDTSTVIMTTGGYDGNSCL-VSSFAFLPNECNWAHLAPMQTSRHDHGTVSIGNDLFVAGGFNSRKGPLNTTEHYNSMSNKWRGLGQMHFKRKSLGISVYQDKLFVSGGLDENYNALDSVEFYDDESRCWKVFPNMNQARYSHGFVGSNQYGLFSIGGWKCA------TVER--CVDGEWRMVAEMSNPRAGATNVIHGHQIYVCGGYNSECV-NSLEIYNIDHDTWTQGASASVARWRAGYAISENTIYIIGGRDSTWQYLDTVESYDIDTNKWNF 2080
            ++N L   Q+     DV++  +  EI AHRV+L+A S  F AMF  +M E+    +++  + G+T LSK  I YIYT  I + E N++  L  +S   +++++Q CC FL+  L  +N L I   A    C +L ++     E++F +++  E FL +  + +  ++SSD + V SE+ V    + W++++ + R  +   + + VR   L          R Y   + T E   +I N+  C D    ++A K +L              +PR  +    V++  GG    +   V  + F   E  W  +A + + R   G V +   ++  GGFN     + T + Y+ + ++W  +  M  +R +LG +V  D L+  GG D +   L SVE Y  ++  W     MN  R S G VG  +  L+++GG+  A      TVE+      EW  VA+MS  R+GA   +   Q+Y  GG++   V  S+E+Y+   +TW Q A  ++ R  AG       +Y++GG D +   L +VE Y+  T+KW  
Sbjct:   39 VMNELRSKQL---LCDVMIVAEDVEIEAHRVVLAACSPYFCAMFTGDMSESKAKKIEIKDVDGQT-LSK-LIDYIYTAEIEVTEENVQVLLPAASLLQLMDVRQNCCDFLQSQLHPTNCLGIRAFADVHTCTDLLQQANAYAEQHFPEVMLGEEFLSLSLDQVCSLISSDKLTVSSEEKVFEAVISWINYEKETRLEHMAKLMEHVRLPLL---------PRDY--LVQTVEEEALIKNNNTCKD--FLIEAMKYHLLPLDQRLLIKNPRTKPRTPVSLPKVMIVVGGQAPKAIRSVECYDF--EEDRWDQIAELPSRRCRAGVVFMAGHVYAVGGFNGSLR-VRTVDVYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGS-TGLASVEAYSYKTNEWFFVAPMNTRRSSVG-VGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNEWIYVADMSTRRSGAGVGVLSGQLYATGGHDGPLVRKSVEVYDPGTNTWKQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN-LASVEYYNPVTDKWTL 566          
The following BLAST results are available for this feature:
BLAST of TCONS_00004507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLHL32.860e-6128.99Kelch-like protein 3 OS=Homo sapiens GN=KLHL3 PE=1... [more]
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