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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004507 ID=TCONS_00004507|Name=TCONS_00004507|organism=Clytia hemisphaerica|type=transcript|length=2141bp
tttatttggaacctaagagtactacGATAAGCTATTTATAAATACCTATA
CATAAAAACAGCACCAAGGTAAAAAGTTAATTTACATTTGGAAAGTTACA
ACAATaaccacaaaaaaaattaacaacaaaCAATTCtcagatttcaaatt
aatgCAAACTAAAACAAAACAACGCGTAAAATCAACTTCGCAAGCGTAAA
TCGTAATATTTCATATAATTGATTTCCAAGACTGTTTCCTCTTGAATTGA
TTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTCGTCAAAAACATGTTT
aatttttacaaactttcacATTTCGCGATACTGGATTTCATAAAAAAGGC
AAGAAATCGcgaaattcgaaaatttaatccgattaaaacAACACACTACT
TCATTATATTTACTTCATTATATTATTCACATAATGTTTTGGGACTTTAA
CGACGGAACACCTCAGTCCCATTAACTTACAAGGAAGAGGTGTCTCGAAA
TTCCACTTATTCGTATCAATATCATAACTTTCAACTGTGTCAAGGTATTG
CCATGTGGAATCCCTACCACCTATAATGTAAATGGTATTTTCTGAGATTG
CATAGCCTGCTCTCCACCTGGCAACAGACGCTGAAGCCCCTTGTGTCCAA
GTGTCATGATCGATATTATAGATTTCAAGAGAATTGACACACTCTGAATT
ATAACCTCCACACACATAAATTTGATGACCATGAATGACGTTGGTTGCAC
CAGCTCTAGGGTTTGACATTTCTGCAACCATTCGCCACTCTCCATCGACA
CATCGCTCAACCGTTGCGCATTTCCAACCACCaattgaaaacaaaccata
CTGGTTGCTTCCTACAAAACCATGACTATATCTTGCTTGATTCATGTTTG
GAAATACTTTCCAGCATCTTGATTCATCATCGTAGAATTCAACACTATCT
AATGCATTATAATTCTCATCCAATCCACCACTAACAAAAAGTTTGTCCTG
ATAAACTGATATACCCAaggattttcttttaaaatgcaTTTGTCCCAAGC
CTCTCCATTTATTACTCATTGAGTTATAGTGCTCTGTTGTGTTCAAAGGA
CCTTTTCGACTATTAAATCCTCCTGCAACAAACAGATCATTCCCAATTGA
TACTGTTCCATGATCGTGTCGTGATGTTTGCATTGGTGCAAGATGGGCCC
AGTTGCATTCGTTTGGTAGAAATGCAAAAGAAGATACAAGGCAAGAGTTT
CCATCATATCCACCTGTTGTCATGATTACAGTTGAAGTGTCTAAACAGTG
TCGTGGTTGTAAATTCTCTTTACTAGCATCTAGGGTGGCTGAATCATCGA
CACACATTGCATCATTGGTAATCATCAATATGTTTTCAGGGGTACTCAGA
GAAAGTGAATAGAATCGAGATGTAAGCATATCAAAGCATTGCCCACTTAA
AAATCCAGTTCTTACACATTTGAAAACATCATTGAAATAATTAGATCTTT
GCTTCCAATCATGATCCAACCATTTGAGGTATGTGAGCAAAACAAGATCT
TCACTTTCAACCTGTATTCCATCACTTGATAGCACCTCTAAGATTGTATT
ATTCCGCATGCGAAGAAAGTTTTCATACttaattattttgtcaaaatttt
cttcaatcatTTTCATGCACTTTTCTTTCAATTCAAAGCATTGGAAATGG
GAAGCAATGTCAAAAATATCAAGAGAATTTGACAGCTGTAGAGCCTTCTC
CAAAAATCTGCAGCACTTTTGCTTCAAATTCAACATCATAAAATAACTCG
AGAAGGATAGAAAACCTTCAATGTTATGTTCATCAAGGGATATAAAACCT
GTGTATATGTAAGTGATAAATTCCTTCGATAAATCTGTTTCACCGTAGAT
TGTGGAAAGGTCAACAATACCTTCATTTGTTTCTTTCATGTTTGTCTGGA
ACATTGCAGCAAAAACTTCAGAAGCCGCTGAAAGTATGACTCGATGAGCC
AGGATCTCTTTACTCTTGAATTTAAGTAGCACATCTGTGAAATTTCCATC
AATTTGGTACTGAGATAAGCTGTTAAGCAAGCCTTCTCTGTGCTGCTTAT
CAAATTTTGATTCTACCAcggccgccatcttgaaaaggttt Run BLAST on NCBI transcript from alignment at sc0000045:472856..475292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004507 ID=TCONS_00004507|Name=TCONS_00004507|organism=Clytia hemisphaerica|type=transcript|length=2437bp|location=Sequence derived from alignment at sc0000045:472856..475292+ (Clytia hemisphaerica)
tttatttggaacctaagagtactacGATAAGCTATTTATAAATACCTATA
CATAAAAACAGCACCAAGGTAAAAAGTTAATTTACATTTGGAAAGTTACA
ACAATaaccacaaaaaaaattaacaacaaaCAATTCtcagatttcaaatt
aatgCAAACTAAAACAAAACAACGCGTAAAATCAACTTCGCAAGCGTAAA
TCGTAATATTTCATATAATTGATTTCCAAGACTGTTTCCTCTTGAATTGA
TTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTCGTCAAAAACATGTTT
aatttttacaaactttcacATTTCGCGATACTGGATTTCATAAAAAAGGC
AAGAAATCGcgaaattcgaaaatttaatccgattaaaacAACACACTACT
TCATTATATTATTCACATAATGTTTTNATTTAACAACAAACATTTCtcag
atttcaaattaatgCAAACTAAAACAAAACAACGCGTAAAATCAACTTCG
CAAGCGTAAATCGTAATATTTCATATAATTGATTTCCAAGACTGTTTCCT
CTTGAATTGATTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTCGTCAA
AAACATGTTTaatttttacaaactttcacATTTCGCGATACTGGATTTCA
TAAAAAAGGCAAGAAATCGcgaaattcgaaaatttaatccgattaaaacA
ACACACTACTTCATTATATTATTCACATAATGTTTTGGGACTTTAACGAC
GGAACACCTCAGTCCCATTAACTTACAAGGAAGAGGTGTCTCGAAATTCC
ACTTATTCGTATCAATATCATAACTTTCAACTGTGTCAAGGTATTGCCAT
GTGGAATCCCTACCACCTATAATGTAAATGGTATTTTCTGAGATTGCATA
GCCTGCTCTCCACCTGGCAACAGACGCTGAAGCCCCTTGTGTCCAAGTGT
CATGATCGATATTATAGATTTCAAGAGAATTGACACACTCTGAATTATAA
CCTCCACACACATAAATTTGATGACCATGAATGACGTTGGTTGCACCAGC
TCTAGGGTTTGACATTTCTGCAACCATTCGCCACTCTCCATCGACACATC
GCTCAACCGTTGCGCATTTCCAACCACCaattgaaaacaaaccataCTGG
TTGCTTCCTACAAAACCATGACTATATCTTGCTTGATTCATGTTTGGAAA
TACTTTCCAGCATCTTGATTCATCATCGTAGAATTCAACACTATCTAATG
CATTATAATTCTCATCCAATCCACCACTAACAAAAAGTTTGTCCTGATAA
ACTGATATACCCAaggattttcttttaaaatgcaTTTGTCCCAAGCCTCT
CCATTTATTACTCATTGAGTTATAGTGCTCTGTTGTGTTCAAAGGACCTT
TTCGACTATTAAATCCTCCTGCAACAAACAGATCATTCCCAATTGATACT
GTTCCATGATCGTGTCGTGATGTTTGCATTGGTGCAAGATGGGCCCAGTT
GCATTCGTTTGGTAGAAATGCAAAAGAAGATACAAGGCAAGAGTTTCCAT
CATATCCACCTGTTGTCATGATTACAGTTGAAGTGTCTAAACAGTGTCGT
GGTTGTAAATTCTCTTTACTAGCATCTAGGGTGGCTGAATCATCGACACA
CATTGCATCATTGGTAATCATCAATATGTTTTCAGGGGTACTCAGAGAAA
GTGAATAGAATCGAGATGTAAGCATATCAAAGCATTGCCCACTTAAAAAT
CCAGTTCTTACACATTTGAAAACATCATTGAAATAATTAGATCTTTGCTT
CCAATCATGATCCAACCATTTGAGGTATGTGAGCAAAACAAGATCTTCAC
TTTCAACCTGTATTCCATCACTTGATAGCACCTCTAAGATTGTATTATTC
CGCATGCGAAGAAAGTTTTCATACttaattattttgtcaaaattttcttc
aatcatTTTCATGCACTTTTCTTTCAATTCAAAGCATTGGAAATGGGAAG
CAATGTCAAAAATATCAAGAGAATTTGACAGCTGTAGAGCCTTCTCCAAA
AATCTGCAGCACTTTTGCTTCAAATTCAACATCATAAAATAACTCGAGAA
GGATAGAAAACCTTCAATGTTATGTTCATCAAGGGATATAAAACCTGTGT
ATATGTAAGTGATAAATTCCTTCGATAAATCTGTTTCACCGTAGATTGTG
GAAAGGTCAACAATACCTTCATTTGTTTCTTTCATGTTTGTCTGGAACAT
TGCAGCAAAAACTTCAGAAGCCGCTGAAAGTATGACTCGATGAGCCAGGA
TCTCTTTACTCTTGAATTTAAGTAGCACATCTGTGAAATTTCCATCAATT
TGGTACTGAGATAAGCTGTTAAGCAAGCCTTCTCTGTGCTGCTTATCAAA
TTTTGATTCTACCAcggccgccatcttgaaaaggttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004507-exon-sc0000045-1491911889:472856..473265 | TCONS_00004507-exon-sc0000045-1491911889:472856..473265 | Clytia hemisphaerica | exon |
| TCONS_00004507-exon-sc0000045-1510915933:472856..473265 | TCONS_00004507-exon-sc0000045-1510915933:472856..473265 | Clytia hemisphaerica | exon |
| TCONS_00004507-exon-sc0000045-1575043694:472856..473265 | TCONS_00004507-exon-sc0000045-1575043694:472856..473265 | Clytia hemisphaerica | exon |
| TCONS_00004507-exon-sc0000045-1491911889:473562..475292 | TCONS_00004507-exon-sc0000045-1491911889:473562..475292 | Clytia hemisphaerica | exon |
| TCONS_00004507-exon-sc0000045-1510915933:473562..475292 | TCONS_00004507-exon-sc0000045-1510915933:473562..475292 | Clytia hemisphaerica | exon |
| TCONS_00004507-exon-sc0000045-1575043694:473562..475292 | TCONS_00004507-exon-sc0000045-1575043694:473562..475292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:472856..475292 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00004507 vs. Swiss-Prot (Human)
Match: KLHL3 (Kelch-like protein 3 OS=Homo sapiens GN=KLHL3 PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 2.860e-61 Identity = 160/552 (28.99%), Postives = 267/552 (48.37%), Query Frame = -2
Query: 497 LLNSLSQYQIDGNFTDVLLKFKSKEILAHRVILSAASEVFAAMFQTNMKETNEGIVDLSTIYGETDLSKEFITYIYTGFISLDEHNIEGFLSFSSYFMMLNLKQKCCRFLEKALQLSNSLDIFDIASHFQCFELKEKCMKMIEENFDKIIKYENFLRMRNNTILEVLSSDGIQVESEDLVLLTYLKWLDHDWKQRSNYFNDVFKCVRTGFLSGQCFDMLTSRFYSLSLSTPENILMITNDAMCVDDSATLDASKENL--------------QPRHCLDTSTVIMTTGGYDGNSCL-VSSFAFLPNECNWAHLAPMQTSRHDHGTVSIGNDLFVAGGFNSRKGPLNTTEHYNSMSNKWRGLGQMHFKRKSLGISVYQDKLFVSGGLDENYNALDSVEFYDDESRCWKVFPNMNQARYSHGFVGSNQYGLFSIGGWKCA------TVER--CVDGEWRMVAEMSNPRAGATNVIHGHQIYVCGGYNSECV-NSLEIYNIDHDTWTQGASASVARWRAGYAISENTIYIIGGRDSTWQYLDTVESYDIDTNKWNF 2080
++N L Q+ DV++ + EI AHRV+L+A S F AMF +M E+ +++ + G+T LSK I YIYT I + E N++ L +S +++++Q CC FL+ L +N L I A C +L ++ E++F +++ E FL + + + ++SSD + V SE+ V + W++++ + R + + + VR L R Y + T E +I N+ C D ++A K +L +PR + V++ GG + V + F E W +A + + R G V + ++ GGFN + T + Y+ + ++W + M +R +LG +V D L+ GG D + L SVE Y ++ W MN R S G VG + L+++GG+ A TVE+ EW VA+MS R+GA + Q+Y GG++ V S+E+Y+ +TW Q A ++ R AG +Y++GG D + L +VE Y+ T+KW
Sbjct: 39 VMNELRSKQL---LCDVMIVAEDVEIEAHRVVLAACSPYFCAMFTGDMSESKAKKIEIKDVDGQT-LSK-LIDYIYTAEIEVTEENVQVLLPAASLLQLMDVRQNCCDFLQSQLHPTNCLGIRAFADVHTCTDLLQQANAYAEQHFPEVMLGEEFLSLSLDQVCSLISSDKLTVSSEEKVFEAVISWINYEKETRLEHMAKLMEHVRLPLL---------PRDY--LVQTVEEEALIKNNNTCKD--FLIEAMKYHLLPLDQRLLIKNPRTKPRTPVSLPKVMIVVGGQAPKAIRSVECYDF--EEDRWDQIAELPSRRCRAGVVFMAGHVYAVGGFNGSLR-VRTVDVYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGS-TGLASVEAYSYKTNEWFFVAPMNTRRSSVG-VGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNEWIYVADMSTRRSGAGVGVLSGQLYATGGHDGPLVRKSVEVYDPGTNTWKQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN-LASVEYYNPVTDKWTL 566
The following BLAST results are available for this feature:
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