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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004501 ID=TCONS_00004501|Name=TCONS_00004501|organism=Clytia hemisphaerica|type=transcript|length=3044bp
TCTTCATGCCAACTCATTTGAAAGGTGATAGGTTGAAAGTGGTATACAAC
CAAACTAAACATTAAAGTGAAGAATAAAAAGTAATTATAAACGATACAAG
AATTAACTGAACATTACCAATTAGTAGGCTTGATTCAAACTTAATGCACC
GTGAGGTTTGCAAAGGGGTACAAGAACCTTGTTTCGGCGTTCGTAAAACG
TTATTTTGGTGTTATGTCATGAACATTGGATGGACGTTGCTTGCTGTAGA
AATTTTCATGTATATTGGACGAAAAGCTTAGACCTTTAATTATTATGCGA
TGATGTCACACTGTAAATAATATAAATCAAATTATTTAAATCAGCACTAA
AACACTTTAATCTACTTTTTTAAGTCTAATTGCATTTATTTATAGtttat
atttcattttaatAATCTAAATTCTGTATAtataatttaaataaaatttt
ggtcaaaaaatttcgTAAAAATGCTGTCAAAAATAATCAGCAAACTTTAA
TTAAATATAAGTCATCAAACACGTAGTATCCAAATAATCGATATGTCTGA
TGGATATTTTCTTGTCCAAATTTTGTTCACCTGtccgaaatattttcaaa
tttccgaaATTTGTTCACCTGTCCGAAATTCAATACTCATCAGCATCCTC
ATCGTCTATCATATCATTAGAATCCATTCCTACTTCTTCGTAATCTTTTT
CCAGGGCTGCCAAATTCTCCCTGGCTTCCGCAAATTCTCCTTCCTCCATA
CCTAAAGAAGAAGAGAATTTGATTGGACGAAAAGAAGGAATTTAAAAGGA
TAAGTGAGTATATCTTTAGATATTTTCACTCTTTCTGGCTGATAACTGCA
AATTTGAGGGTGTCAAAAAGCAAAGGGGTGCCGAGATTAGCaatcaataa
attttatttcGGGGTACAAAGCAATATTTCTAGTAAGGGATAAAAGAAAC
AAGCACTTACCTTCTCCTACATACCAATGCACAAAAGCACGTTTGCGGTA
CATCAAATCGAATTTATGATCAACACGTGACCATACTTCACCAATAGCAG
TCGTGTTTGATAGCATACAAACAGCTCTGTCAAGCTTTGCCAAGTCTCCG
TTTGGTACGGTCGCCGGGGCGAATTGGTTGATACCAACTTTAAACCCAGT
TGGACACCAATCGACAAATTCGATTGTACGTTTAGCCTTGACGGTTGAGA
TTGCAGAATTGACGTCCTTAGGCTGGACATTTCCACGGTATAACAAACAA
CATGCCATGTATTTCCCTCCACGTGGGTCGAATTTTGTCATTTGTGATTT
CGACTCGAAACAAGCATTAGTAAGTTCGGTTACCGAGTGTTTTTCATGGT
GGGATTTTTCTACGGAAACGACAGGTGCAAATGCCGGTACCGGAAAATGA
ATTCTTGGGTATGGTACCAAGTTAGTTTGGAATTCATTCAGATCAACATT
CAAGGAACCTTCGAATCTAAGAGAGGCTGTAATACTTGAAACCACCTGTC
CAATTAAACGGTTCAAATTAACATATGTCGGACGTTCGATATTAAGGTTT
GTCCGGCATAATTCGAAGATAGCCTCGTTGTCAACCATAAAAGCACAATC
TTGATGCTCCAAACCAGTATGACTTGTCAAGACTGTATTGTATGGTTCTA
CGACGGCAGTTGAGACCTGAGGTGCCGGATGAACGGTGAAAGCCAGTTTG
CATTTCTTGCCATGTTCTGCAGAAATTCTTTCGGCAAGGAGGGATGTGAG
TCCGGAGCCGGTTCCTCCTCCAAGGGAATGGTAAACAATGAATCCTTGAA
GACTGTAACAGTTTTGTGTAATCTTTCGGATGGCTTCCAACACTTCGTCA
ATAATCTCACGCCCTATTGCAATGATGGAAAGTTAGAGTCAGCATTTTTT
TCTGAAGTGATTTGGTCTGATACAGGGGTCATTCAAAAATATGCAAGTTG
CGTTAAATGGTTAGATTCTTCAGGAAGGTTCTGGAGGGAAGAGTTGATTA
TCAAGGACTTTAAATATGTGACTTTGGAATGGGATTTGAACTCCTTACGT
TTGTTTGACTATTTGTTACGGCATGAAATATTGCAAATCTGAATCGGTTA
GGAAATAATACATACCAACGGTGTAATGTCCACGAGCATAATTGTTTGCT
GCATCCTCTTTTCCATTGATCAATTGGTCAGGATGAAAGAGATCTTTGTG
CTTGCCCGTTCGCGTCTCGTCTAGAATGAGAAAATCATTTATGAAAGAGA
ATCTTAAATAATGTTCAAAAATGNAATTGTTTGCTGCATCCTCTTTTCCA
TTGATCAATTGGTCAGGATGAAAGAGATCTTTGTGCTTGCCCGTTCGCGT
CTCGTCTAGAATGAGAGAATCATTTATGAAAGAGAATCTTAAATAATGTT
CAAAAATTATTTGTGTGCCGATCGATGAACTATTAGGGCATGTTGCGGAT
ATGCTATTTCAAAAAGTAGAGCATTAGCAAAAAGCAGTCTTCCGAGAAAA
ACTACGTCGTCGAAATCGATTGAGATGACAGATTGAGGATTGTAAAGTTT
AACATACAAGACGAGAATAGTATTGATTAATAGCATACCgtcgcgaatct
aaaaatagacattgatttttaagtttgactgaaattcaatcccatcagcc
tttgcgtttattacgcttgcacgcaaattacactcaattacaaagaacaa
gtaataactttcacgacttttgaattaagacgaaaaggattgtgggattg
aatttcggtcaaatgagaaAAGTAATAATCATGACGAAGCACTATTCATT
GCCAATAATTTTGATCAGCAATTCTTACCAATAACAGTGGGCTCCAAGTC
AGCAAAGACAGCTCTGGGAACGAATTTCCCGCCTCCTGTTTCCGAGAAGA
AGGATTTGCAGGCACCATTGATTTCATTACCATCAGGAACCAATCCATCA
GGGGAAATCCCGTGTTCCAAACAATACAATTCCCAACACGAGTTCCCTAT
TTGGCAACCAGCTTGTCCGATATGAATTGATACTACTTCCCGCT Run BLAST on NCBI transcript from alignment at sc0000045:455324..458931+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004501 ID=TCONS_00004501|Name=TCONS_00004501|organism=Clytia hemisphaerica|type=transcript|length=3608bp|location=Sequence derived from alignment at sc0000045:455324..458931+ (Clytia hemisphaerica)
TCTTCATGCCAACTCATTTGAAAGGTGATAGGTTGAAAGTGGTATACAAC
CAAAGTAAGAGTCTTCTATTTTATTTGTAACCAGACTAAACTTTCCCCAA
AAACTAGAGCCAGACTTTACAacttaagcttttttcacatgtacgtaaaa
tgtTACGTAAGACCTTGAagggtggggaatttccctaagcttacgtagtg
ttttaaggccttatgtatgaacggaaggaaaagtcacgtaaCAAAAATTC
TACATAATatcggggaaattcccaaaagacagccttacgaacgattttcg
gtaaggtctaaagtaaaattttacatGCATGTGCGTTCTCCAAGCTCTTG
ATGTTTTAATACTGCATTCAGATTTGGTAATCTAACATACACATATAGTG
TTTCTAATTCAACAGGAAATTACTAAAAAATTCGTCTTGACTCGTTTTCT
ATactaattttttccattttttttattttgagtaatttattTCCTAAGTC
TATGGGCCGCTATGAAACTACTCAAACTTGGGCAATGTTTCTTCTGCTTG
GGTGTCGGATGGTGGAAGGCACATATTAATGGAATATTATGTCATAATTT
TACTTCTTTCACTTCCAGCTAAACATTAAAGTGAAGAATAAAAAGTAATT
ATAAACGATACAAGAATTAACTGAACATTACCAATTAGTAGGCTTGATTC
AAACTTAATGCACCGTGAGGTTTGCAAAGGGGTACAAGAACCTTGTTTCG
GCGTTCGTAAAACGTTATTTTGGTGTTATGTCATGAACATTGGATGGACG
TTGCTTGCTGTAGAAATTTTCATGTATATTGGACGAAAAGCTTAGACCTT
TAATTATTATGCGATGATGTCACACTGTAAATAATATAAATCAAATTATT
TAAATCAGCACTAAAACACTTTAATCTACTTTTTTAAGTCTAATTGCATT
TATTTATAGtttatatttcattttaatAATCTAAATTCTGTATAtataat
ttaaataaaattttggtcaaaaaatttcgTAAAAATGCTGTCAAAAATAA
TCAGCAAACTTTAATTAAATATAAGTCATCAAACACGTAGTATCCAAATA
ATCGATATGTCTGATGGATATTTTCTTGTCCAAATTTTGTTCACCTGtcc
gaaatattttcaaatttccgaaATTTGTTCACCTGTCCGAAATTCAATAC
TCATCAGCATCCTCATCGTCTATCATATCATTAGAATCCATTCCTACTTC
TTCGTAATCTTTTTCCAGGGCTGCCAAATTCTCCCTGGCTTCCGCAAATT
CTCCTTCCTCCATACCTAAAGAAGAAGAGAATTTGATTGGACGAAAAGAA
GGAATTTAAAAGGATAAGTGAGTATATCTTTAGATATTTTCACTCTTTCT
GGCTGATAACTGCAAATTTGAGGGTGTCAAAAAGCAAAGGGGTGCCGAGA
TTAGCaatcaataaattttatttcGGGGTACAAAGCAATATTTCTAGTAA
GGGATAAAAGAAACAAGCACTTACCTTCTCCTACATACCAATGCACAAAA
GCACGTTTGCGGTACATCAAATCGAATTTATGATCAACACGTGACCATAC
TTCACCAATAGCAGTCGTGTTTGATAGCATACAAACAGCTCTGTCAAGCT
TTGCCAAGTCTCCGTTTGGTACGGTCGCCGGGGCGAATTGGTTGATACCA
ACTTTAAACCCAGTTGGACACCAATCGACAAATTCGATTGTACGTTTAGC
CTTGACGGTTGAGATTGCAGAATTGACGTCCTTAGGCTGGACATTTCCAC
GGTATAACAAACAACATGCCATGTATTTCCCTCCACGTGGGTCGAATTTT
GTCATTTGTGATTTCGACTCGAAACAAGCATTAGTAAGTTCGGTTACCGA
GTGTTTTTCATGGTGGGATTTTTCTACGGAAACGACAGGTGCAAATGCCG
GTACCGGAAAATGAATTCTTGGGTATGGTACCAAGTTAGTTTGGAATTCA
TTCAGATCAACATTCAAGGAACCTTCGAATCTAAGAGAGGCTGTAATACT
TGAAACCACCTGTCCAATTAAACGGTTCAAATTAACATATGTCGGACGTT
CGATATTAAGGTTTGTCCGGCATAATTCGAAGATAGCCTCGTTGTCAACC
ATAAAAGCACAATCTTGATGCTCCAAACCAGTATGACTTGTCAAGACTGT
ATTGTATGGTTCTACGACGGCAGTTGAGACCTGAGGTGCCGGATGAACGG
TGAAAGCCAGTTTGCATTTCTTGCCATGTTCTGCAGAAATTCTTTCGGCA
AGGAGGGATGTGAGTCCGGAGCCGGTTCCTCCTCCAAGGGAATGGTAAAC
AATGAATCCTTGAAGACTGTAACAGTTTTGTGTAATCTTTCGGATGGCTT
CCAACACTTCGTCAATAATCTCACGCCCTATTGCAATGATGGAAAGTTAG
AGTCAGCATTTTTTTCTGAAGTGATTTGGTCTGATACAGGGGTCATTCAA
AAATATGCAAGTTGCGTTAAATGGTTAGATTCTTCAGGAAGGTTCTGGAG
GGAAGAGTTGATTATCAAGGACTTTAAATATGTGACTTTGGAATGGGATT
TGAACTCCTTACGTTTGTTTGACTATTTGTTACGGCATGAAATATTGCAA
ATCTGAATCGGTTAGGAAATAATACATACCAACGGTGTAATGTCCACGAG
CATAATTGTTTGCTGCATCCTCTTTTCCATTGATCAATTGGTCAGGATGA
AAGAGATCTTTGTGCTTGCCCGTTCGCGTCTCGTCTAGAATGAGAAAATC
ATTTATGAAAGAGAATCTTAAATAATGTTCAAAAATGNAATTGTTTGCTG
CATCCTCTTTTCCATTGATCAATTGGTCAGGATGAAAGAGATCTTTGTGC
TTGCCCGTTCGCGTCTCGTCTAGAATGAGAGAATCATTTATGAAAGAGAA
TCTTAAATAATGTTCAAAAATTATTTGTGTGCCGATCGATGAACTATTAG
GGCATGTTGCGGATATGCTATTTCAAAAAGTAGAGCATTAGCAAAAAGCA
GTCTTCCGAGAAAAACTACGTCGTCGAAATCGATTGAGATGACAGATTGA
GGATTGTAAAGTTTAACATACAAGACGAGAATAGTATTGATTAATAGCAT
ACCgtcgcgaatctaaaaatagacattgatttttaagtttgactgaaatt
caatcccatcagcctttgcgtttattacgcttgcacgcaaattacactca
attacaaagaacaagtaataactttcacgacttttgaattaagacgaaaa
ggattgtgggattgaatttcggtcaaatgagaaAAGTAATAATCATGACG
AAGCACTATTCATTGCCAATAATTTTGATCAGCAATTCTTACCAATAACA
GTGGGCTCCAAGTCAGCAAAGACAGCTCTGGGAACGAATTTCCCGCCTCC
TGTTTCCGAGAAGAAGGATTTGCAGGCACCATTGATTTCATTACCATCAG
GAACCAATCCATCAGGGGAAATCCCGTGTTCCAAACAATACAATTCCCAA
CACGAGTTCCCTATTTGGCAACCAGCTTGTCCGATATGAATTGATACTAC
TTCCCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004501-exon-sc0000045-1491911889:455324..455377 | TCONS_00004501-exon-sc0000045-1491911889:455324..455377 | Clytia hemisphaerica | exon |
| TCONS_00004501-exon-sc0000045-1510915933:455324..455377 | TCONS_00004501-exon-sc0000045-1510915933:455324..455377 | Clytia hemisphaerica | exon |
| TCONS_00004501-exon-sc0000045-1575043694:455324..455377 | TCONS_00004501-exon-sc0000045-1575043694:455324..455377 | Clytia hemisphaerica | exon |
| TCONS_00004501-exon-sc0000045-1491911889:455942..458931 | TCONS_00004501-exon-sc0000045-1491911889:455942..458931 | Clytia hemisphaerica | exon |
| TCONS_00004501-exon-sc0000045-1510915933:455942..458931 | TCONS_00004501-exon-sc0000045-1510915933:455942..458931 | Clytia hemisphaerica | exon |
| TCONS_00004501-exon-sc0000045-1575043694:455942..458931 | TCONS_00004501-exon-sc0000045-1575043694:455942..458931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:455324..458931 + |
Blast
BLAST of TCONS_00004501 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1) HSP 1 Score: 452.981 bits (1164), Expect = 3.088e-148 Identity = 226/303 (74.59%), Postives = 263/303 (86.80%), Query Frame = -2
Query: 959 IGREIIDEVLEAIRKITQNCYSLQGFIVYHXXXXXXXXXXXXXLAERISAEHGKKCKLAFTVHPAPQVSTAVVEPYNTVLTSHTGLEHQDCAFMVDNEAIFELCRTNLNIERPTYVNLNRLIGQVVSSITASLRFEGSLNVDLNEFQTNLVPYPRIHXXXXXXXXXVSVEKSHHEKHSVTELTNACFESKSQMTKFDPRGGKYMACCLLYRGNVQPKDVNSAISTVKAKRTIEFVDWCPTGFKVGINQFAPATVPNGDLAKLDRAVCMLSNTTAIGEVWSRVDHKFDLMYRKRAFVHWYVGEG 1867
IG+EIID VL+ IRK+ C LQGF+V+HS GGGTGSG TSLL ER+S ++GKK KL F+++PAPQVSTAVVEPYN++LT+HT LEH DCAFMVDNEAI+++CR NL+IERPTY NLNRLIGQ+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFP+ +APV+S EK++HE+ SV E+TNACFE +QM K DPR GKYMACCLLYRG+V PKDVN+AI+T+K KRTI+FVDWCPTGFKVGIN P VP GDLAK+ RAVCMLSNTTAI E W+R+DHKFDLMY KRAFVHWYVGEG
Sbjct: 110 IGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412 HSP 2 Score: 108.997 bits (271), Expect = 8.085e-25 Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = -3
Query: 2824 REVVSIHIGQAGCQIGNSCWELYCLEHGISPDGLVPDGNEING---ACKSFFSETGGGKFVPRAVFADLEPTVIGK 3042
RE +SIH+GQAG QIGN+CWELYCLEHGI PDG +P I G + +FFSETG GK VPRAVF DLEPTVI +
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77
The following BLAST results are available for this feature:
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