TCONS_00004484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004484
Unique NameTCONS_00004484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004484 ID=TCONS_00004484|Name=TCONS_00004484|organism=Clytia hemisphaerica|type=transcript|length=811bp
caaaaataaaatgaaactaTTTGACAAATAGAGATGAGAAacacatgaaa
aagaaatttacagGGTGGATGGAGTCAAGAGCATTCACACATGGAAATCT
TGTGAATCAAAAATTCTGATTTTGAACCTAAATGCCACGTGTTAGAAAAG
CTGCTTCAACAATAAAAAATACACTCACAACAAGACAAAAAGAGGCTATT
CCACAGGAACCTACAACTGCTACACAAACCAAAGACTCACAAGACTGGTT
AACACTTTTATCACAGCTTCCAGAACAACCAGCAACCATCTCTACTGgtt
tacaaaacattcgaataacaAGAAGCCATTCGAATAAActtcaacaaaac
aaacaattagTTCGTAAGCTTTTCACCGCTGAATCTGTCTCCAAAACACA
ACGACGAACCAATATGTCTGATTCTGAAGGAGACCATGGAGCTTTTGCAA
ATCAAACTTATGTCAAACCTGCCCGTGCTGTTGGTGTAAAATTACCGAAA
AATACTCATCCACCATATTTACAGATGATCCAAGAGTCGCTAACAGAATT
AGAGGAGCGCGGCAAAGGTGTATCTCGTGCAAAGATAATTGCCCACATTA
AAGAGAAGTACACTTTACAAGATATCAATAATCTTGCTTTGAACAGAGCC
ATGAAAGGGGCCATCGAAAAGAATATCATCCTGAATTCGACTGGTACTGG
TCTAACCGGATCTTTCAAGTTGACAAAAGAATACAAAGAAGAGAAGAAAC
AAGCTGCAAAAGTGCTGAGTAAGCAGAAAGAAAGTAAGAGCAAGctcaaa
accaaagaaaa
Run BLAST on NCBI

protein sequence of TCONS_00004484-protein

>TCONS_00004484-protein ID=TCONS_00004484-protein|Name=TCONS_00004484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MPRVRKAASTIKNTLTTRQKEAIPQEPTTATQTKDSQDWLTLLSQLPEQP
ATISTGLQNIRITRSHSNKLQQNKQLVRKLFTAESVSKTQRRTNMSDSEG
DHGAFANQTYVKPARAVGVKLPKNTHPPYLQMIQESLTELEERGKGVSRA
KIIAHIKEKYTLQDINNLALNRAMKGAIEKNIILNSTGTGLTGSFKLTKE
YKEEKKQAAKVLSKQKESKSKLKTKE
Run BLAST on NCBI

transcript from alignment at sc0000045:178713..180562+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004484 ID=TCONS_00004484|Name=TCONS_00004484|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000045:178713..180562+ (Clytia hemisphaerica)
caaaaataaaatgaaactaTTTGACAAATAGAGATGAGAAacacatgaaa
aagaaatttacagGGTGGATGGAGTCAAGAGCATTCACACATGGAAATCT
TGTGAATCAAAAATTCTGATTTTGAACCTAAATGCCACGTGTTAGAAAAG
CTGCTTCAACAATAAAAAATACACTCACAACAAGACAAAAAGAGGCTATT
CCACAGGAACCTACAACTGCTACACAAACCAAAGACTCACAAGACTGGTT
AACACTTTTATCACAGCTTCCAGAACAACCAGCAACCATCTCTACTGgtt
tacaaaacattcgaataacaAGAAGCCATTCGAATAAActtcaacaaaac
aaacaattagTTCGTAAGCTTTTCACCGCTGAATCTGTCTCCAAAACACA
ACGACGAACCAATATGTCTGATTCTGAAGGAGACCATGGAGCTTTTGCAA
ATCAAACTTATGTCAAACCTGCCCGTGCTGTTGGTGTAAAATTACCGAAA
AATACTCATCCACCATATTTACAGATGATCCAAGGTGAGTTTTTTCCAAT
ATTTACAGCAATGTCTCGAACTACATGGGCCCGGCGAGCAATTATgagtg
gggggggggcaatttGGTTGAGCAACGAAGAAatctttcactttttacac
cctccaAAAACCTTAAAACGTtatctaattggggagaataatagttttta
tggattaaaatagtaacttttaaaataatatGGCATGGTCTacaaaaaag
gggggggggggtagagtAATAAATAGCGAAGGGGGCTCTAAATTTTGCCC
GAAAAGAAGCGGATAGGATATGTATACTTATTtccccaaatttgcgaaaa
ggAGGGAGGaaaccaaaaaataaatttaaagaaaacaaaTTGTACAAAAA
CTTTCAGGGTCAAGTTATCTTAAAAAGTCGGGCCTTGTAATTCTTGTAAG
AAATtgtgaaatttatttgattccGCAtagcctgaaaatatttttaactt
gttcttaatgttTTGACCATGGAAGACTTTGTGTTCCAACATAGTTTGTT
TCTATAAAAATGTTCTCATGTGAATATCTTATTTTCATCTAATCATCCCG
AATTTTTATGATTCAGAGTCGCTAACAGAATTAGAGGAGCGCGGCAAAGG
TGTATCTCGTGCAAAGATAATTGCCCACATTAAAGAGAAGTACACTTTAC
AAGATATCAATAATCTTGCTTTGAACAGAGCCATGAAAGGGGCCATCGAA
AAGAATATCATCCTGAATTCGACTGGTGAGTGCTGTTTCCtcaaattaac
aaaagaaaatctaatttaaaGTATTTAGTAAaagtatctttaaaaaactt
tcatctttgtttttagTGCTTCTAACCATGGCGTTCAGAATTCTAAGGGA
CCTATTTTCAAATTTAGTATGGCATGGCTGCTTCAACAGCACCCTGAACT
CAGGGCTTATCCGACCCCCTTGTGCTATTGATAAATTGATGGACGCCTTG
CCGGGGGATATAAATGATTCCTCCAGTTTTACGGAGCTGGCCTCTTTacg
tcgcagaatcgtttatcggccttGGTTCGCGAGGGTTTTTTCAGTAGTTT
CCGACACAGCTTTTGTTTGCATTGTACTTGAAACGAATGacgaaaagtgt
ttttatttttcctttattttgaaTACCTAGCTGTTGTCGAGGATTTTGTC
AAGTTTCATTTTAACGAAATCTTAAATTTCAGGTACTGGTCTAACCGGAT
CTTTCAAGTTGACAAAAGAATACAAAGAAGAGAAGAAACAAGCTGCAAAA
GTGCTGAGTAAGCAGAAAGAAAGTAAGAGCAAGctcaaaaccaaagaaaa

Coding sequence (CDS) from alignment at sc0000045:178713..180562+

>TCONS_00004484 ID=TCONS_00004484|Name=TCONS_00004484|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000045:178713..180562+ (Clytia hemisphaerica)
ATGCCACGTGTTAGAAAAGCTGCTTCAACAATAAAAAATACACTCACAAC
AAGACAAAAAGAGGCTATTCCACAGGAACCTACAACTGCTACACAAACCA
AAGACTCACAAGACTGGTTAACACTTTTATCACAGCTTCCAGAACAACCA
GCAACCATCTCTACTGgtttacaaaacattcgaataacaAGAAGCCATTC
GAATAAActtcaacaaaacaaacaattagTTCGTAAGCTTTTCACCGCTG
AATCTGTCTCCAAAACACAACGACGAACCAATATGTCTGATTCTGAAGGA
GACCATGGAGCTTTTGCAAATCAAACTTATGTCAAACCTGCCCGTGCTGT
TGGTGTAAAATTACCGAAAAATACTCATCCACCATATTTACAGATGATCC
AAGAGTCGCTAACAGAATTAGAGGAGCGCGGCAAAGGTGTATCTCGTGCA
AAGATAATTGCCCACATTAAAGAGAAGTACACTTTACAAGATATCAATAA
TCTTGCTTTGAACAGAGCCATGAAAGGGGCCATCGAAAAGAATATCATCC
TGAATTCGACTGGTACTGGTCTAACCGGATCTTTCAAGTTGACAAAAGAA
TACAAAGAAGAGAAGAAACAAGCTGCAAAAGTGCTGAGTAAGCAGAAAGA
AAGTAAGAGCAAGctcaaaaccaaagaaATGCCACGTGTTAGAAAAGCTG
CTTCAACAATAAAAAATACACTCACAACAAGACAAAAAGAGGCTATTCCA
CAGGAACCTACAACTGCTACACAAACCAAAGACTCACAAGACTGGTTAAC
ACTTTTATCACAGCTTCCAGAACAACCAGCAACCATCTCTACTGgtttac
aaaacattcgaataacaAGAAGCCATTCGAATAAActtcaacaaaacaaa
caattagTTCGTAAGCTTTTCACCGCTGAATCTGTCTCCAAAACACAACG
ACGAACCAATATGTCTGATTCTGAAGGAGACCATGGAGCTTTTGCAAATC
AAACTTATGTCAAACCTGCCCGTGCTGTTGGTGTAAAATTACCGAAAAAT
ACTCATCCACCATATTTACAGATGATCCAAGAGTCGCTAACAGAATTAGA
GGAGCGCGGCAAAGGTGTATCTCGTGCAAAGATAATTGCCCACATTAAAG
AGAAGTACACTTTACAAGATATCAATAATCTTGCTTTGAACAGAGCCATG
AAAGGGGCCATCGAAAAGAATATCATCCTGAATTCGACTGGTACTGGTCT
AACCGGATCTTTCAAGTTGACAAAAGAATACAAAGAAGAGAAGAAACAAG
CTGCAAAAGTGCTGAGTAAGCAGAAAGAAAGTAAGAGCAAGctcaaaacc
aaagaaATGCCACGTGTTAGAAAAGCTGCTTCAACAATAAAAAATACACT
CACAACAAGACAAAAAGAGGCTATTCCACAGGAACCTACAACTGCTACAC
AAACCAAAGACTCACAAGACTGGTTAACACTTTTATCACAGCTTCCAGAA
CAACCAGCAACCATCTCTACTGgtttacaaaacattcgaataacaAGAAG
CCATTCGAATAAActtcaacaaaacaaacaattagTTCGTAAGCTTTTCA
CCGCTGAATCTGTCTCCAAAACACAACGACGAACCAATATGTCTGATTCT
GAAGGAGACCATGGAGCTTTTGCAAATCAAACTTATGTCAAACCTGCCCG
TGCTGTTGGTGTAAAATTACCGAAAAATACTCATCCACCATATTTACAGA
TGATCCAAGAGTCGCTAACAGAATTAGAGGAGCGCGGCAAAGGTGTATCT
CGTGCAAAGATAATTGCCCACATTAAAGAGAAGTACACTTTACAAGATAT
CAATAATCTTGCTTTGAACAGAGCCATGAAAGGGGCCATCGAAAAGAATA
TCATCCTGAATTCGACTGGTACTGGTCTAACCGGATCTTTCAAGTTGACA
AAAGAATACAAAGAAGAGAAGAAACAAGCTGCAAAAGTGCTGAGTAAGCA
GAAAGAAAGTAAGAGCAAGctcaaaaccaaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002525XLOC_002525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004484-proteinTCONS_00004484-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004484-exon-sc0000045-1491911889:178713..179246TCONS_00004484-exon-sc0000045-1491911889:178713..179246Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1510915933:178713..179246TCONS_00004484-exon-sc0000045-1510915933:178713..179246Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1575043694:178713..179246TCONS_00004484-exon-sc0000045-1575043694:178713..179246Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1491911889:179829..179987TCONS_00004484-exon-sc0000045-1491911889:179829..179987Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1510915933:179829..179987TCONS_00004484-exon-sc0000045-1510915933:179829..179987Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1575043694:179829..179987TCONS_00004484-exon-sc0000045-1575043694:179829..179987Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1491911889:180445..180562TCONS_00004484-exon-sc0000045-1491911889:180445..180562Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1510915933:180445..180562TCONS_00004484-exon-sc0000045-1510915933:180445..180562Clytia hemisphaericaexon
TCONS_00004484-exon-sc0000045-1575043694:180445..180562TCONS_00004484-exon-sc0000045-1575043694:180445..180562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:178713..180562 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
583.438	543.255	1361.03	1365.83	2.22529	2.19807	0.0757678	1.27679	0.0496618	1.78391	0	0	0	0	0	0.0718244	0	0	0.125294	0.0655558	0.569799	0.333514	176.024	170.721	0	0.0564704	8.56576	11.6426	115.974	125.557
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005818Histone_H1/H5_H15
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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