TCONS_00004484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004484-protein
Unique NameTCONS_00004484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004484-protein ID=TCONS_00004484-protein|Name=TCONS_00004484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MPRVRKAASTIKNTLTTRQKEAIPQEPTTATQTKDSQDWLTLLSQLPEQP
ATISTGLQNIRITRSHSNKLQQNKQLVRKLFTAESVSKTQRRTNMSDSEG
DHGAFANQTYVKPARAVGVKLPKNTHPPYLQMIQESLTELEERGKGVSRA
KIIAHIKEKYTLQDINNLALNRAMKGAIEKNIILNSTGTGLTGSFKLTKE
YKEEKKQAAKVLSKQKESKSKLKTKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002525XLOC_002525Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004484TCONS_00004484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005818Histone_H1/H5_H15
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 123..189
e-value: 2.3E-6
score: 37.1
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 126..197
e-value: 2.2E-18
score: 66.3
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 125..199
score: 23.681
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 121..210
e-value: 3.4E-17
score: 62.1
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 122..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableCDDcd00073H15coord: 123..210
e-value: 1.06302E-16
score: 71.1131

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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