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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004476 ID=TCONS_00004476|Name=TCONS_00004476|organism=Clytia hemisphaerica|type=transcript|length=2131bp
ATCAGATTGAACTCAGTTGGTATTTTGACAACGTTTAAGAACAAGTCAAG
ACACACAAATCTATAAAGTGAAACTCATATTTTATCATATTCTGAAGTAT
CATATATCTTTATCGCTGTTTCACGTCAACGTTGAAAAAATCGTTGGAAG
TGCTGGATTCTATATTTTGGGTATTTTGACTTGTACAAAAACCACGGAAG
TCAAGACTTAGAGCCACCCACGCATTCAAAACAGACAAACAGTTAGATCG
AAAAGAAAGGGAAAATACATAATCTAATCACCGAATTTCATAAACCAAGG
TATACTACAAGAACACAAAATGAAGACAGGTCTCAACAGCAACTTGGCTG
TCAAAAGTATCGGTCAATCTTTAGCCAAAATGGGGGACGATTTGAACAAG
AAGTATACAAGCAATACAAATAATCGAAATACCAAAACAAACAACTCCAC
TTCAAGCACTCGAGGAGGATCCCTTAACTCGTCCACTGGCAATAGTACct
acttgaataaaaatagcAGCAAACTTGGCAAGAAAAATACCTCGATGTAA
TATGAACTGGTGTGCAATACAAGCAGAGGATTATGGGATATTGTTCACAA
TGACCTGGCACCAGGGTAGAAAGCTATACGAGGGGATACCCTTTTGTAAA
TAATGGTGCGCGTCCAGAAAATAATGGTATTTGTATGCGATGAGATTTGG
ACTTTATTGTTGAGTTGGGAGAATAATTCTGGTCTTATCTAATGACATAC
AAGAAGTCTAATTCTAATATTATCggtaaaataaaatattgtGAAATCTG
TTTTTTGATCTCAGTCACAGCTTGACTGGAAtcgatgtacacgttttttt
tgtaagaacaaactatacataaaaaaacataaggcttcgatggtcaaaat
gttaagaacattgtaagactttgtggactctaaaacactcaatttcttag
aaaaattgacaaaatactcacaaaatggtaaaaataagaacatgttaaaa
acaattttaagcttcaaattctcaaaaagttaagagcatccgaaagcttc
aaaaacttGTTCTCATAAAGAACGttatcaaaatatattataaaaggAAA
CAATGCCCTGAAATTTAATACGAATTTTGCACTTTAACACTGTTTTATTA
TGACCTTGTATTTGGATAAATTATTTGATTTCTGGGAGAGCCAACTTTCG
TTTTAACACACAATGACATGCGATATTGTCGACCTTCATACTTCTCTCTC
ATCAAGTAAATAAACTAACTTGTACATAGTGTAATATAATCAGACAATTA
TTGAGTAATTTTTTATGATGTTTGTTTGTAAATATGTCTTcgcatgcaaa
aaatcaaagaatcgaCAGTCaacattttgcaatttctcATAAGCTTGCAA
CGAAATATAAGATTACAATACAGCCGTCTAGGAAAATATTATGGGTGTAG
CCTTACAGTATCATAAAAACTTCTGCCATTTCAAGACAGTAATAACACTG
TTTATATAAGACCAATTTTACAGGAACAAAGAGAATCTTAGAATGTCGAA
ATATAAGGACAACGCTGAGTCTGGTATAACTGCTCAGACTCAACGAGTGC
AGCCTAAAATGCCTCAGTATTGCCCTGAAATACAGGACCTGAGAACAATT
TGAGACTCAAAGTGAGAACAGTCGATCCTCATccaaaacttcttttaaaa
atcttaacATATagtcttacaaaaaaaaattagataaagCAAGTTATTTA
GAAATTCAAACGTAGGCATTCTTCCGTTTCTGAAGCTCGTTAAGCAACGA
GAGCCACGAGGTCTTATGTTATTTAATAGCTAAATCTCATCCGCCCTTTT
TCCCACGCCATTTTCGCCACGTTCTTTGTCATGAGAGttggaaagagaaa
aaaaacaaccaaaatgcaCGCAAAAGTTTTATCAGAGGAGTTCCTCTTAA
TAAGGCACAAGTTAGAATTTGAAAACACCCAAGTAAacctttttagtatt
tttgtcatCTACATGCTCAAAATATATTGTTAATTCTTATATTtaattat
tttgtaaatattttgtataGATCATTGCAACCctataattttttattaaa
taattatcaaaaaaaacaataatcagaaaaa Run BLAST on NCBI transcript from alignment at sc0000045:101956..106666+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004476 ID=TCONS_00004476|Name=TCONS_00004476|organism=Clytia hemisphaerica|type=transcript|length=4711bp|location=Sequence derived from alignment at sc0000045:101956..106666+ (Clytia hemisphaerica)
ATCAGATTGAACTCAGTTGGTATTTTGACAACGTTTAAGAACAAGTCAAG
ACACACAAATCTATAAAGTGAAACTCATATTTTATCATATTCTGAAGTAT
CATATATCTTTATCGCTGTTTCACGTCAACGTTGAAAAAATCGTTGGAAG
TGCTGGATTCTATATTTTGGGTATTTTGACTTGTACAAAAACCACGGAAG
TCAAGACTTAGAGCCACCCACGCATTCAAAACAGACAAACAGTTAGATCG
AAAAGAAAGGGAAAATACATAATCTAATCACCGAATTTCATAAACCAAGG
TAAGATTTGTCTCTACTTTttagggacaagctggagtttttacaagctct
tatttgatttggttggtcNAAATTAGAATCTGCGAGTTACAAATTtgtgg
gacaagctggagtttttacaagctcttatttgatttggttggtcgttaag
aagtaataaaagaatcttattactttttctaaagaacgcgtcatctctat
cactttaaatgaccaattagtgaagtatcttgtaaaaactccagctaaTG
CCACTTTTTATACAccactgtctcacagccccggtggaacatCTTTCCCA
CAGCAGGGGTACTCTtagggcccccccgcttgttaatttttcgaaaattt
tccaacccaacccccccccggaccttattaggaccccccgtttattaatc
tctaagaatattttcagctgtcagagagaaggccccttattttgctctaa
atNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATAAACAGACAAA
GCCGAAAACCGACAATCAACCGACAAAAACCGACAGTACACACACAAAAG
ATCGTGTTACATCGAACCTCAAGTGGAGTGAAAAAATGATAAAACGCAAT
ATCTATCAGATTGAACTCAGTTGGTATTTTGACAACGTTTAAGAACAAGT
CAAGACACACAGATCTATAAAGTGAAACTCGTATTTCATCATTCTGAAGT
ATCATAGATCTTTATCGTTTTTTGACGTCAACATTAAAAAAATCGTTGGA
AGTGCTGGATTCCATATATTTTGGGTATTTTGGCTTGTACAAAAACCTCG
GAAGTCAAGACTTAGAGCCACCCACGCATTCAAAACAGACAAACAATCAG
ATCGATAAGAACGGGAAAATACCTAATCACCGAATTTCATAAACCAAAGT
AAGCTTTGTCTTTGTCTTTACTTTTTATACACCACTGTCTCACAGCTCCA
GTGGAGCTTCTTTCCCACAGCGGGGGTATTCCAATGGGAATAGAAAGTCT
ATTGTCCCAAGCCTGACATATCCCAGTGGGAATAGTTTTGGGGTGCAATC
TTTTTGCAGTAgatttcaaatggggataaaatctaAGTCAATCTACcgat
ggggctgaaattgtagggtatatTTACCACagaattttggtgaaattttc
cagtggggctgggctcGCAGTGGGTCTTtgacaaaggtttgtttttatga
tTTCACACGAATAACCTACGTAAGCACAATAGTGAAATGAAGAGGTCCCA
TCAAAGCTATCACGAATTCCTTGAAAGGAACGTTTATAATAAGGCAGCTC
CATTGAAAGTTGGGAGACAAGGGTGGCTTTAGGTAGGATGAATAAAACCA
AATTTGTATCATTCTTCTAGCAAATGCTAACTCAGCTCCTCAATTTAACA
ATCAACTACTTAAACATAAAGGGACAGAGTTAGACTGTCAGTACGAAAAC
TTACGTCTGTATAtgtaagaaaataaatttaacgACTTTTCTGATAAACT
CTAGCACAACCTTCTCTAGGGTTGATAGGTGAATTgtaaaaaaaactata
aatGAACTAGAAACTATAAATCGAAAACGAAATCCGCTTTAACTTAATGA
TGTTCCTCTAAAAGCAGTTTCCGTGAAAAGATGAAATAAACATTGTACTG
ACAGGAAAGTAGTTATTAATGTCAGCCTTTTGATTGATGTGCACGTGATT
TTTATCGAAATGAAATGATAaagtttcgtcagccatctttgtTACGAGGA
ATGATAAGAGGATAAACTAGttgaaataaagatttttggtttttaaatAT
ATAGTATTTTGTTTTTATGGTTATTTGATAGACTGACAAAGAAATGAGAA
ATCGTGCGAAGTCGTGTGTAAAACTGGTGCTTTCTCTTCGACATAATATT
GTTGAGGCCTCTTAGCGGTTTAAACGATTGCGTGATTGGAAATTTTCTTG
CGTGAAGGCGTGACTTTGACAACTCAGCGTGATGATGTGAATCTCAGCGT
GTTACGCATGATTAGGCCAAAAACACGGCGCTATGCGTGATTTCGGCTGT
TTTATTAGGCCTTTCTACAGTACTCATTTATCTCTAACGAAAAGGTTTTT
ATAGTTTCTGTATAGGAAGTATAGGGGTCTGCTGCGGGTCAAAATACTGC
TATTTTAGTCGACAAATATACAGTTATGAGAAAATTTTGGCGATTTTCGT
GTTTGTAATAGAGCTAAAAGATGCATATGGCATGATAAAATACTCTTTTC
ATGTTATTGGAAACTCGTCAGGATAGTATTGAAATACTGAGAACTCTCTC
TAAATCGAATCactattatttgaatcttttcgAAAATGCTATAAATGTTT
AAACTAGCCCctgcaattcgaatctttctctaattcgaataagatttttg
gtcggattagagagagagtcaactgtactgAGATCCAATCCACGTTTTCT
CGTCTAAAAAACTTCATGTCTATTCACAGGTATACTACAAGAACACAAAA
TGAAGACAGGTCTCAACAGCAACTTGGCTGTCAAAAGTATCGGTCAATCT
TTAGCCAAAATGGGGGACGATTTGAACAAGAAGTATACAAGCAATACAAA
TAATCGAAATACCAAAACAAACAACTCCACTTCAAGCACTCGAGGAGGAT
CCCTTAACTCGTCCACTGGCAATAGTACctacttgaataaaaatagcAGC
AAACTTGGCAAGAAAAATACCTCGATGTAATATGAACTGGTGTGCAATAC
AAGCAGAGGATTATGGGATATTGTTCACAATGACCTGGCACCAGGGTAGA
AAGCTATACGAGGGGATACCCTTTTGTAAATAATGGTGCGCGTCCAGAAA
ATAATGGTATTTGTATGCGATGAGATTTGGACTTTATTGTTGAGTTGGGA
GAATAATTCTGGTCTTATCTAATGACATACAAGAAGTCTAATTCTAATAT
TATCggtaaaataaaatattgtGAAATCTGTTTTTTGATCTCAGTCACAG
CTTGACTGGAAtcgatgtacacgttttttttgtaagaacaaactatacat
aaaaaaacataaggcttcgatggtcaaaatgttaagaacattgtaagact
ttgtggactctaaaacactcaatttcttagaaaaattgacaaaatactca
caaaatggtaaaaataagaacatgttaaaaacaattttaagcttcaaatt
ctcaaaaagttaagagcatccgaaagcttcaaaaacttGTTCTCATAAAG
AACGttatcaaaatatattataaaaggAAACAATGCCCTGAAATTTAATA
CGAATTTTGCACTTTAACACTGTTTTATTATGACCTTGTATTTGGATAAA
TTATTTGATTTCTGGGAGAGCCAACTTTCGTTTTAACACACAATGACATG
CGATATTGTCGACCTTCATACTTCTCTCTCATCAAGTAAATAAACTAACT
TGTACATAGTGTAATATAATCAGACAATTATTGAGTAATTTTTTATGATG
TTTGTTTGTAAATATGTCTTcgcatgcaaaaaatcaaagaatcgaCAGTC
aacattttgcaatttctcATAAGCTTGCAACGAAATATAAGATTACAATA
CAGCCGTCTAGGAAAATATTATGGGTGTAGCCTTACAGTATCATAAAAAC
TTCTGCCATTTCAAGACAGTAATAACACTGTTTATATAAGACCAATTTTA
CAGGAACAAAGAGAATCTTAGAATGTCGAAATATAAGGACAACGCTGAGT
CTGGTATAACTGCTCAGACTCAACGAGTGCAGCCTAAAATGCCTCAGTAT
TGCCCTGAAATACAGGACCTGAGAACAATTTGAGACTCAAAGTGAGAACA
GTCGATCCTCATccaaaacttcttttaaaaatcttaacATATagtcttac
aaaaaaaaattagataaagCAAGTTATTTAGAAATTCAAACGTAGGCATT
CTTCCGTTTCTGAAGCTCGTTAAGCAACGAGAGCCACGAGGTCTTATGTT
ATTTAATAGCTAAATCTCATCCGCCCTTTTTCCCACGCCATTTTCGCCAC
GTTCTTTGTCATGAGAGttggaaagagaaaaaaaacaaccaaaatgcaCG
CAAAAGTTTTATCAGAGGAGTTCCTCTTAATAAGGCACAAGTTAGAATTT
GAAAACACCCAAGTAAacctttttagtatttttgtcatCTACATGCTCAA
AATATATTGTTAATTCTTATATTtaattattttgtaaatattttgtataG
ATCATTGCAACCctataattttttattaaataattatcaaaaaaaacaat
aatcagaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004476-exon-sc0000045-1491911889:101956..102254 | TCONS_00004476-exon-sc0000045-1491911889:101956..102254 | Clytia hemisphaerica | exon |
| TCONS_00004476-exon-sc0000045-1510915933:101956..102254 | TCONS_00004476-exon-sc0000045-1510915933:101956..102254 | Clytia hemisphaerica | exon |
| TCONS_00004476-exon-sc0000045-1575043694:101956..102254 | TCONS_00004476-exon-sc0000045-1575043694:101956..102254 | Clytia hemisphaerica | exon |
| TCONS_00004476-exon-sc0000045-1491911889:104835..106666 | TCONS_00004476-exon-sc0000045-1491911889:104835..106666 | Clytia hemisphaerica | exon |
| TCONS_00004476-exon-sc0000045-1510915933:104835..106666 | TCONS_00004476-exon-sc0000045-1510915933:104835..106666 | Clytia hemisphaerica | exon |
| TCONS_00004476-exon-sc0000045-1575043694:104835..106666 | TCONS_00004476-exon-sc0000045-1575043694:104835..106666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:101956..106666 + |
Blast
The following BLAST results are available for this feature:
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