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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004403 ID=TCONS_00004403|Name=TCONS_00004403|organism=Clytia hemisphaerica|type=transcript|length=1130bp
GTTCGCGAGAAAAGTTAAGTTTGCATTACGTCATTTTAAATCAATCAAAC
AAGCAGGAAAGGTTCGTTGTCCTTCGCCTGCAAGGTTGTGAAGCCTGGCA
GGATCTTTTTGCGCCGTCTTATCAACCTCTCGACCAAGGTTTCCAAACTT
CACCATCACATTGATGTATCTTCTTCTGTGCGTTCAGATATTGAAATGTG
GTCTTCTCTCCTCGGTCTTGGAATGGCGTTTCTGCTCTTCACTCTTTCCA
GGTCTCATCTCATGACCTTCAATTGTTCACGGATGCATCATCTTCTTTGG
GTTGCGGTGCCTTCTTTAATGGTCAGTGGTTCTCTGTCGAGTGGCCTGTT
GATGTCTCTGGACATCATATAGCCACGCTTGAGTTGTTTGCCATCTACGC
GGCTCTTCTAACTTGGGGCACTTCCCTTAGGAATCTCCAGGTCCTCGTCT
TCACCGACAACGAGCCCATCGTCCAGGTCTGGGCATTGGGTTCCTCCAAG
GACGAATCCATCATGAAGTTAGTTAGACTTATCTTCTTCCTTTCGGTCGA
GTTGAATATTTCTTTGACTTTGAGACATGCCCCAGGTTATTACAATGCGT
TTGCTGATCTGCTTTCTCGTTTGCAGGTGGACCGCTTTTTGACATTGTGC
CCAGACGCTTCTCCCGTTCCTTCGTCCATCCCACCGGTGACTTGGCGCTT
CTTCTCTCCGGAATGACAACGTTCCTTCAGAATTCTTTGGCCACCTCTAC
ACTACAAACATACAGATCTGGTGCTAGACGTTACATTAATTTTTGTTCCT
GCTTTCGTCTTGCTCCGTTCCCTGTATCAGAGATCGTCCTGTGCTTATTC
GTGTCACACCTTGCGCAATGTCGTCTTTCCTTCAAGACCATAAGAGTGTA
CCTTTTCGGCATCCAGTACCACAGTTTACTACATGGCTTctcaataaaaa
tatcgaaCATGAACTACTTATATTACACACTTCGTGGCATTCGCCGAATT
CAGGGCAACTCCCTTACCCGTCCTCCCCGCAGTCCCATTACAGTCTCCCA
CTTGTGGTCTTTGTACGCCTTTATGGAGTCTTCACACTTCTCTCCCCACG
ACAAATCCCTTTGGCGCTGTCTGGTTGTTG Run BLAST on NCBI protein sequence of TCONS_00004403-protein >TCONS_00004403-protein ID=TCONS_00004403-protein|Name=TCONS_00004403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MTTFLQNSLATSTLQTYRSGARRYINFCSCFRLAPFPVSEIVLCLFVSHL
AQCRLSFKTIRVYLFGIQYHSLLHGFSIKISNMNYLYYTLRGIRRIQGNS
LTRPPRSPITVSHLWSLYAFMESSHFSPHDKSLWRCLVV Run BLAST on NCBI transcript from alignment at sc0000044:228734..229915- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004403 ID=TCONS_00004403|Name=TCONS_00004403|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at sc0000044:228734..229915- (Clytia hemisphaerica)
GTTCGCGAGAAAAGTTAAGTTTGCATTACGTCATTTTAAATCAATCAAAC
AAGCAGGAAAGGTTCGTTGTCCTTCGCCTGCAAGGTTGTGAAGCCTGGCA
GGATCTTTTTGCGCCGTCTTATCAACCTCTCGACCAAGGTTTCCAAACTT
CACCATCACATTGATGTATCTTCTTCTGTGCGTTCAGATATTGAAATGTG
GTCTTCTCTCCTCGGTCTTGGAATGGCGTTTCTGCTCTTCACTCTTTCCA
GGTCTCATCTCATGACCTTCAATTGTTCACGGATGCATCATCTTCTTTGG
GTTGCGGTGCCTTCTTTAATGGTCAGTGGTTCTCTGTCGAGTGGCCTGTT
GATGTCTCTGGACATCATATAGCCACGCTTGAGTTGTTTGCCATCTACGC
GGCTCTTCTAACTTGGGGCACTTCCCTTAGGAATCTCCAGGTCCTCGTCT
TCACCGACAACGAGCCCATCGTCCAGGTCTGGGCATTGGGTTCCTCCAAG
GACGAATCCATCATGAAGTTAGTTAGACTTATCTTCTTCCTTTCGGTCGA
GTTGAATATTTCTTTGACTTTGAGACATGCCCCAGGTTATTACAATGCGT
TTGCTGATCTGCTTTCTCGTTTGCAGGTGGACCGCTTTTTGACATTGTGC
CCAGACGCTTCTCCCGTTCCTTCGTCCATCCCACCGGTGACTTGGCGCTT
CTTCTCTCCGGAATGACAACGTTCCTTCAGAATTCTTTGGCCACCTCTAC
ACTACAAACATACAGATCTGGTGCTAGACGTTACATTAATTTTTGTTCCT
GCTTTCGTCTTGCTCCGTTCCCTGTATCAGAGATCGTCCTGTGCTTATTC
GTGTCACACCTTGCGCAATGTCGTCTTTCCTTCAAGACCATAAGAGTGTA
CCTTTTCGGCATCCAGTACCACAGTTTACTACATGGCTTCTCAATAAAAA
TATCGAACATGAACTATTTATATTACACACTTCGTGGCATTCGCCGAATT
CAGGGNGAACATGAACTACTTATATTACACACTTCGTGGCATTCGCCGAA
TTCAGGGCAACTCCCTTACCCGTCCTCCCCGCAGTCCCATTACAGTCTCC
CACTTGTGGTCTTTGTACGCCTTTATGGAGTCTTCACACTTCTCTCCCCA
CGACAAATCCCTTTGGCGCTGTCTGGTTGTTG Coding sequence (CDS) from alignment at sc0000044:228734..229915- >TCONS_00004403 ID=TCONS_00004403|Name=TCONS_00004403|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000044:228734..229915- (Clytia hemisphaerica)
ATGAACTACTTATATTACACACTTCGTGGCATTCGCCGAATTCAGGGCAA
CTCCCTTACCCGTCCTCCCCGCAGTCCCATTACAGTCTCCCACTTGTGGT
CTTTGTACGCCTTTATGGAGTCTTCACACTTCTCTCCCCACGACAAATCC
CTTTGGCGCTGTCTGGTTGTTATGACAACGTTCCTTCAGAATTCTTTGGC
CACCTCTACACTACAAACATACAGATCTGGTGCTAGACGTTACATTAATT
TTTGTTCCTGCTTTCGTCTTGCTCCGTTCCCTGTATCAGAGATCGTCCTG
TGCTTATTCGTGTCACACCTTGCGCAATGTCGTCTTTCCTTCAAGACCAT
AAGAGTGTACCTTTTCGGCATCCAGTACCACAGTTTACTACATGGCTTCT
CAATAAAAATATCGAACATGAACTACTTATATTACACACTTCGTGGCATT
CGCCGAATTCAGGGCAACTCCCTTACCCGTCCTCCCCGCAGTCCCATTAC
AGTCTCCCACTTGTGGTCTTTGTACGCCTTTATGGAGTCTTCACACTTCT
CTCCCCACGACAAATCCCTTTGGCGCTGTCTGGTTGTTATGACAACGTTC
CTTCAGAATTCTTTGGCCACCTCTACACTACAAACATACAGATCTGGTGC
TAGACGTTACATTAATTTTTGTTCCTGCTTTCGTCTTGCTCCGTTCCCTG
TATCAGAGATCGTCCTGTGCTTATTCGTGTCACACCTTGCGCAATGTCGT
CTTTCCTTCAAGACCATAAGAGTGTACCTTTTCGGCATCCAGTACCACAG
TTTACTACATGGCTTCTCAATAAAAATATCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004403-exon-sc0000044-1575043694:228958..229915 | TCONS_00004403-exon-sc0000044-1575043694:228958..229915 | Clytia hemisphaerica | exon |
| TCONS_00004403-exon-sc0000044-1575043694:228734..228905 | TCONS_00004403-exon-sc0000044-1575043694:228734..228905 | Clytia hemisphaerica | exon |
| TCONS_00004403-exon-sc0000044-1510915933:228958..229915 | TCONS_00004403-exon-sc0000044-1510915933:228958..229915 | Clytia hemisphaerica | exon |
| TCONS_00004403-exon-sc0000044-1510915933:228734..228905 | TCONS_00004403-exon-sc0000044-1510915933:228734..228905 | Clytia hemisphaerica | exon |
| TCONS_00004403-exon-sc0000044-1491911889:228958..229915 | TCONS_00004403-exon-sc0000044-1491911889:228958..229915 | Clytia hemisphaerica | exon |
| TCONS_00004403-exon-sc0000044-1491911889:228734..228905 | TCONS_00004403-exon-sc0000044-1491911889:228734..228905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:228734..229915 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
| IPR010998 | Integrase_Lambda-type_N |
Blast
The following BLAST results are available for this feature:
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