|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004399 ID=TCONS_00004399|Name=TCONS_00004399|organism=Clytia hemisphaerica|type=transcript|length=4179bpRun BLAST on NCBI transcript from alignment at sc0000044:157686..171927- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004399 ID=TCONS_00004399|Name=TCONS_00004399|organism=Clytia hemisphaerica|type=transcript|length=14242bp|location=Sequence derived from alignment at sc0000044:157686..171927- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004399 vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 2.801e-22 Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = 2
Query: 914 FEPHETKCTLCQSPLGDSVFPQGTRSTNGNG--YLITNLHSFVKVDIKMKKCSSKDCKAAHVAYPFKNGLFNICNKVIISLDILLEFRCYFKEGVSIYHIIGAKLDALSYKLEEANRPKYNEIRYLVDLICDGFYKFEALTKRDLNDVICGICGIAGRAYMGEANEKNCCALKDID 1435
+E T+C LC SPL F G S G +L+T V ++K C + C A H GLFN+ NK+++SLD+L R K G I L ++ + E+ E+ L +L+C+G++ FE LT RD ND+ICGICG+A + M + +E+N ALK ++
Sbjct: 988 YESPSTQCLLCSSPL----FKGGQNSLAGPQECWLLT-ASRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQTEKTL--TSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEENVLALKSVE 1156 HSP 2 Score: 94.3597 bits (233), Expect = 3.160e-19 Identity = 92/353 (26.06%), Postives = 151/353 (42.78%), Query Frame = 3
Query: 1614 VPVMVPSMQRTIEINTEKEKKNDLLKDSAVLEGDALMLSKMMYDHGLSIQSLDTMQDHILKQLAEECGIQ-TMNKSKDQVKSCLLKLHTSLCTGKSLCHNVVKTPGH-TGGFYRMTCTHGTTVCSKFMVYPETVRDAADLWLSLKHPPVLFMHETPCTFTRHLLNRC-PEVTERYWGDLNGCFEKPVVYEEPNGFLDVPDLTAIEYQEN---TQAQLQLPSCPNNPMMQMFAHPLTNSA-RRYVCGETYTEKTNNHKSHLCKFHNIDLCKQAKE---IKKNFQNCNFNPKHKRRIQTAASMPNNAMMHIFHNYLHTYYKNEEIVMKQKRELEKS--SGKKIVRDSLMRFVVQQ 2636
P P M+ + +NTEK+K D+ + G L +++ + + + + + L+ L +CGI SKDQ+ LL L+ S+ G ++ P H TGG C H SK++V E+ RD DL S +H P +++ + T + C PE+T + WG GCF P EP + P+L Y + T+ +Q HP+T +A RR V + H H++ LC + I + + N +R I +NA + +N L + + EIV +Q ++ +S G+ ++RD+L R V Q
Sbjct: 1202 APFFPPLMRGAVVVNTEKDKNLDVQP----VPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGA----RAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDM-ATSVALCADLCYPELTNQMWGRNQGCFSSPT---EPPVSVSCPELLDQHYTVDMTETEHSIQ--------------HPVTKTATRRIVHAGLQPNPGDPSAGH----HSLALCPELAPYATILASIVDSKPNGVRQRPIAF-----DNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVAQ 1519 The following BLAST results are available for this feature:
BLAST of TCONS_00004399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.