TCONS_00004396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004396
Unique NameTCONS_00004396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004396 ID=TCONS_00004396|Name=TCONS_00004396|organism=Clytia hemisphaerica|type=transcript|length=980bp
CATCTGCCACTTGCTGGTAACTCCTAAACACAGCTGATCACAGCAGCCAT
ATATGCAACTTAAAATAACGATATCGAACACAAGAAAAAACTCCAAGAAT
CAACTATGGAGACGATACCAGAAGGATTATTGGGACCTCGAAAGAAATCA
AATTCGTTCAATAATCGCTTCACTGAGCAAACACGATCTTTGACACGTTT
AAACCCTGAAAGCATATTAAAGAAATCACCACTTCAGCGATCACAATCTA
CCGCCAGTATAGAGAACGTTCTTCACAACGCTGTCTTAAGGGAAGACCAT
GAGGCGGTAGTCCAAATTCTGAACAATAATTTTCTTGATATAAACGCTTT
ATCAATTGATGGTTTTACCTCACTTCACCAAGCTTGTATAGTGGGTAATG
AAGAGACAGTTAAGTTACTAATCGAGGCAGGGGCAGATATAACTTTGAGG
ACACGACGCAAGAAACATGAATCACCTTTAAAGTTAGCTTACCTGAACGG
CAACTTCGAAGTCGCGGAATATTTGTTATCCCTTGGTGCACATGATGCAG
AAATTAAAAACGGAATGTCCAAAAAATGTTTCGGAAGAGCAAACACTTTG
GCTTCGTAAAATGGTTTTGAGAATCGTGTTTTTTGGGGAAGACTGCTAAA
TAGCCGCTgaactttttcgaaaaaattggtCCAATGGCGTTGAGTATCAA
TGCATGTTTCTCTGCATCCTTGAAAACAGTGGTATAGCCTGGAACTGAGA
CCACGATTCCTCTTCCTTTTTAGAAGTCAAATTTGTTTCAGGGTCTTAGA
AGTTGTAAATAGTCAGTAAGTTTAATTTTCTTGAATATTTTGTAACATAT
TTTTTGTGAGGTTCCAATATAAGGAAACTATGATTTAAAAGGTAAATTTT
AAATAGAGCCATCTGATAAAGACTTATTACAGAAACCTATTAACCCTTAA
AGCTTGATGAAAGTGTATTCGAATTTACCA
Run BLAST on NCBI

transcript from alignment at sc0000044:137756..141284-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004396 ID=TCONS_00004396|Name=TCONS_00004396|organism=Clytia hemisphaerica|type=transcript|length=3529bp|location=Sequence derived from alignment at sc0000044:137756..141284- (Clytia hemisphaerica)
CATCTGCCACTTGCTGGTAACTCCTAAACACAGCTGATCACAGCAGCCAT
ATATGCAAGTAGGTTTGCTTTTACTTTCGCATAAACAACAGACCACATTT
CAGTACTTAGCTCCAGTTTAAACAGCCGGCTTTCTTCCCTGTCTAGTTTA
ATTGTTAAAGTGGGCAGAAAGTTGGCAGTTACATACTTTGCTTGAAAAAG
ATTGAAAGAAGTAATTGCATTGACTTTAGACAGCCAACTTTCTGCCACTT
TAATCNGTGGGCAGAAAGTTGGCTGTTACATACTTTGCTTGAAAAAGATT
GAAAGAAGTAATTGCATTGACTTTAGACAGCCAACTTTCTGCCACTTTAA
TCACAATTATTATACATGATATGATCAAATGGAAGTGAGTTTATTTGATT
TACCTTGTGGACATTTACACGCTGATTTCTTGGTTGAATTTATAGTAAAA
CGTTGCATTCCTTATAATTTTTATTATCTCAATGTGTAGATCCACAGCTT
TTTACCGTAAAATGTAACCAAAAGTGACAGTGAATTTTTCAATTTCCCCC
TGTAAATGAGTACTTTACTCAAACTTTACTATAAATGTCATCTCCGAAAA
GGGCCAGAATGCCAGAATTCGCGCTTCTCGTAAATACGCGACTTCTCGTA
AACTTAAGCTCTTCCGTGCAGTGAATCTCCATATTTTGGGTAGGTGGGCA
GGCTATCACACAATGATGACGTATATTTATTTGAACTCTTTCTTGCATAG
GTATCCTATATGTATCAAATTGTTATAAGATGAGGTAACATGTTTCGTAA
TATAATCTATTTGATCAATATGGATGAAATATGAAATTGACAGTGAAAGA
AAATTTGGTGTAAGTAAAGGATTAAGATAACTCCTCCCATGCTCCTCTCG
CTTNTGACAGTGAAAGAAAATTTGGTGTAAGTAAAGGATTAAGATAACTC
CTCCCATTCTCCTCTCGCTTAATTAATCGACTTGTGAGAAAGATACTCCA
GTAACTTTGTTTGTATCAGTTTGTATAGTTGTTGTGGTAAACAGTCTTGC
GAGCATGGACAAGTTTGATCTGAGTGGATTTTATGTAAAGAAAGTATTAT
TAAACATGTAAGAAGTTTGAGTGGCTCTAAGAGGTTTGTAAAGATGGTGT
AGTCTTACTACCAGTGGGTTTGTTGCCAGGATATCCAAACTAGTGGTTTT
TGTAGGCGACTGCGATTCAGATCAATGTTTGTGTGAGTGAGTTGCGTCGA
TTGAAGAAGTAAAGGGAATTAAAGTTGACCCTCTCTAATTCGATTTCAAG
GCCTTTTTCAAGTGTAATTGGATTTTTATCGAATAAGGGGGTTGTATCGA
ATAGTAGAGTGTCGTTTTTGAGAGTTTCTTGTTGATGGTGACTTTTAATA
TTATTGAACAATAGAGCGTATCTGATTAGAGACTTGAATGTTGATTGCGG
TACGGTGGTTCAATAGTTCCTGGCCGGATTGTAGAGATTTTTTAGTTTTA
TTTTTGATTTTTTTTCTGCATCATCAAATCGATGTTATCGACCTCAGTGT
GTTTCAAACTATCTAGTGCATCCACTCAAGTCATTGCAGGATCAGCATTG
TTTTTAAATTGTTCTCATATTTTGACGATTTGTAGCCTAATTGATTTTAT
AAAATGATTATTATAAAAAAAGGTACGGAATTCTTTACGGCAGAAATATT
CCTCCTTTGAGTTTGTCCCTATTTTCTGTAATAAGAAACAAAAGAAAATT
GGTCAGGAAAAAGATGCTAGTCTATTATTTACAGATACATAACTTTTGAA
CACTACTTTATGAACTAAGCTGAGAAATATCTTTTACGTTTCGTATTACT
CTTAGGTGCCTAGTAGTTAATTTTTGAAAATATTTTTAGCAGTCAAAAGA
AGAGTCCATTTTTTGCTGGTTTTAGTCTATGATTACCTTATTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGAGGCAGGGGTATTTAGAG
GTACATTTCCACCCCTACCGTTTATTAACATTTCGACACACATCCAGGCC
AGGTAGGCACCCCAGAGTAACGACTTTGAATTCTTATTTCCTTGACCAAT
ACAATGATTCTTTGATTAACTTGAACAAAATACAAGAGAAAAACGTCTAA
ACTTCTTAACACTTCATCTATATCTTGGGTCATTTTAATACTTTGTGAAA
TATTTTCTTTCTCGCCCCACGGAAATGACCATATTTCTAAATCTTATGAC
ATTATTTCACACAGTTCTAAGAGTTTTTGTATGTAGAGATTATGAGCTTT
GTGAGAGTCGCGTCATGTGTGAACGTGAGTTGACAACATCTCTCTCCGTA
TAAAAAACACTTTTTAAAATACTTGCTTGCTTCTGAGGTTTTATGTAAGT
GATGTTCAAGGTTCGGTCTTAACTACAAATGAATTACAACGGCTGGTTGG
TTTAACGAGTTATAAATAATTTGAATTTCGGGCTTAAATGGTTCGCTTTC
TTTCCAGCTTAAAATAACGATATCGAACACAAGAAAAAACTCCAAGAATC
AACTATGGAGACGATACCAGAAGGATTATTGGGACCTCGAAAGAAATCAA
ATTCGTTCAATAATCGCTTCACTGAGCAAACACGATCTTTGACACGTTTA
AACCCTGAAAGCATATTAAAGAAATCACCACTTCAGCGATCACAATCTAC
CGCCAGTATAGAGAACGTTCTTCACAACGCTGTCTTAAGGGAAGACCATG
AGGCGGTAGTCCAAATTCTGAACAATAATTTTCTTGATATAAACGCTTTA
TCAATTGATGGTTTTACCTCACTTCACCAAGCTTGTATAGTGGGTAATGA
AGAGACAGTTAAGTTACTAATCGAGGCAGGGGCAGATATAACTTTGAGGA
CACGACGCAAGAAACATGAATCACCTTTAAAGTTAGCTTACCTGAACGGC
AACTTCGAAGTCGCGGAATATTTGTTATCCCTTGGTGCACATGATGCAGA
AATTAAAAACGGAATGTCCAAAAAATGTTTCGGAAGAGCAAACACTTTGG
CTTCGTAAAATGGTTTTGAGAATCGTGTTTTTTGGGGAAGACTGCTAAAT
AGCCGCTGAACTTTTTCGAAAAAATTGGTCCAATGGCGTTGAGTATCAAT
GCATGTTTCTCTGCATCCTTGAAAACAGTGGTATAGCCTGGAACTGAGAC
CACGATTCCTCTTCCTTTTTAGAAGTCAAATTTGTTTCAGGGTCTTAGAA
GTTGTAAATAGTCAGTAAGTTTAATTTTCTTGAATATTTTGTAACATATT
TTTTGTGAGGTTCCAATATAAGGAAACTATGATTTAAAAGGTAAATTTTA
AATAGAGCCATCTGATAAAGACTTATTACAGAAACCTATTAACCCTTAAA
GCTTGATGAAAGTGTATTCGAATTTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002457XLOC_002457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004396-exon-sc0000044-1575043694:141227..141284TCONS_00004396-exon-sc0000044-1575043694:141227..141284Clytia hemisphaericaexon
TCONS_00004396-exon-sc0000044-1575043694:137756..138677TCONS_00004396-exon-sc0000044-1575043694:137756..138677Clytia hemisphaericaexon
TCONS_00004396-exon-sc0000044-1510915933:141227..141284TCONS_00004396-exon-sc0000044-1510915933:141227..141284Clytia hemisphaericaexon
TCONS_00004396-exon-sc0000044-1510915933:137756..138677TCONS_00004396-exon-sc0000044-1510915933:137756..138677Clytia hemisphaericaexon
TCONS_00004396-exon-sc0000044-1491911889:141227..141284TCONS_00004396-exon-sc0000044-1491911889:141227..141284Clytia hemisphaericaexon
TCONS_00004396-exon-sc0000044-1491911889:137756..138677TCONS_00004396-exon-sc0000044-1491911889:137756..138677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:137756..141284 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22337	1.19153	0	0	0	0	4.71635	2.94494	0	2.55389	0	1.62952	3.2545	0	0.339677	0.448646	11.3419	11.297	2.60094	5.44339	13.0111	21.6531	5.60993	0	7.1614	3.51675	0	0	0	1.38343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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