TCONS_00004395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004395
Unique NameTCONS_00004395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004395 ID=TCONS_00004395|Name=TCONS_00004395|organism=Clytia hemisphaerica|type=transcript|length=951bp
ATGAAATTGACagtgaaagaaaatttggtCTTAAAATAACGATATCGAAC
ACAAGAAAAAACTCCAAGAATCAACTATGGAGACGATACCAGAAGGATTA
TTGGGACCTCGAAAGAAATCAAATTCGTTCAATAATCGCTTCACTGAGCA
AACACGATCTTTGACACGTTTAAACCCTGAAAGCATATTAAAGAAATCAC
CACTTCAGCGATCACAATCTACCGCCAGTATAGAGAACGTTCTTCACAAC
GCTGTCTTAAGGGAAGACCATGAGGCGGTAGTCCAAATTCTGAACAATAA
TTTTCTTGATATAAACGCTTTATCAATTGATGGTTTTACCTCACTTCACC
AAGCTTGTATAGTGGGTAATGAAGAGACAGTTAAGTTACTAATCGAGGCA
GGGGCAGATATAACTTTGAGGACACGACGCAAGAAACATGAATCACCTTT
AAAGTTAGCTTACCTGAACGGCAACTTCGAAGTCGCGGAATATTTGTTAT
CCCTTGGTGCACATGATGCAGAAATTAAAAACGGAATGTCCAAAAAATGT
TTCGGAAGAGCAAACACTTTGGCTTCGTAAAATGGTTTTGAGAATCGTGT
TTTTTGGGGAAGACTGCTAAATAGCCGCTgaactttttcgaaaaaattgg
tCCAATGGCGTTGAGTATCAATGCATGTTTCTCTGCATCCTTGAAAACAG
TGGTATAGCCTGGAACTGAGACCACGATTCCTCTTCCTTTTTAGAAGTCA
AATTTGTTTCAGGGTCTTAGAAGTTGTAAATAGTCAGTAAGTTTAATTTT
CTTGAATATTTTGTAACATATTTTTTGTGAGGTTCCAATATAAGGAAACT
ATGATTTAAAAGGTAAATTTTAAATAGAGCCATCTGATAAAGACTTATTA
CAGAAACCTATTAACCCTTAAAGCTTGATGAAAGTGTATTCGAATTTACC
A
Run BLAST on NCBI

protein sequence of TCONS_00004395-protein

>TCONS_00004395-protein ID=TCONS_00004395-protein|Name=TCONS_00004395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
METIPEGLLGPRKKSNSFNNRFTEQTRSLTRLNPESILKKSPLQRSQSTA
SIENVLHNAVLREDHEAVVQILNNNFLDINALSIDGFTSLHQACIVGNEE
TVKLLIEAGADITLRTRRKKHESPLKLAYLNGNFEVAEYLLSLGAHDAEI
KNGMSKKCFGRANTLAS
Run BLAST on NCBI

transcript from alignment at sc0000044:137756..140454-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004395 ID=TCONS_00004395|Name=TCONS_00004395|organism=Clytia hemisphaerica|type=transcript|length=2699bp|location=Sequence derived from alignment at sc0000044:137756..140454- (Clytia hemisphaerica)
ATGAAATTGACAGTGAAAGAAAATTTGGTGTAAGTAAAGGATTAAGATAA
CTCCTCCCATGCTCCTCTCGCTTNTGACAGTGAAAGAAAATTTGGTGTAA
GTAAAGGATTAAGATAACTCCTCCCATTCTCCTCTCGCTTAATTAATCGA
CTTGTGAGAAAGATACTCCAGTAACTTTGTTTGTATCAGTTTGTATAGTT
GTTGTGGTAAACAGTCTTGCGAGCATGGACAAGTTTGATCTGAGTGGATT
TTATGTAAAGAAAGTATTATTAAACATGTAAGAAGTTTGAGTGGCTCTAA
GAGGTTTGTAAAGATGGTGTAGTCTTACTACCAGTGGGTTTGTTGCCAGG
ATATCCAAACTAGTGGTTTTTGTAGGCGACTGCGATTCAGATCAATGTTT
GTGTGAGTGAGTTGCGTCGATTGAAGAAGTAAAGGGAATTAAAGTTGACC
CTCTCTAATTCGATTTCAAGGCCTTTTTCAAGTGTAATTGGATTTTTATC
GAATAAGGGGGTTGTATCGAATAGTAGAGTGTCGTTTTTGAGAGTTTCTT
GTTGATGGTGACTTTTAATATTATTGAACAATAGAGCGTATCTGATTAGA
GACTTGAATGTTGATTGCGGTACGGTGGTTCAATAGTTCCTGGCCGGATT
GTAGAGATTTTTTAGTTTTATTTTTGATTTTTTTTCTGCATCATCAAATC
GATGTTATCGACCTCAGTGTGTTTCAAACTATCTAGTGCATCCACTCAAG
TCATTGCAGGATCAGCATTGTTTTTAAATTGTTCTCATATTTTGACGATT
TGTAGCCTAATTGATTTTATAAAATGATTATTATAAAAAAAGGTACGGAA
TTCTTTACGGCAGAAATATTCCTCCTTTGAGTTTGTCCCTATTTTCTGTA
ATAAGAAACAAAAGAAAATTGGTCAGGAAAAAGATGCTAGTCTATTATTT
ACAGATACATAACTTTTGAACACTACTTTATGAACTAAGCTGAGAAATAT
CTTTTACGTTTCGTATTACTCTTAGGTGCCTAGTAGTTAATTTTTGAAAA
TATTTTTAGCAGTCAAAAGAAGAGTCCATTTTTTGCTGGTTTTAGTCTAT
GATTACCTTATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGG
GGAGGCAGGGGTATTTAGAGGTACATTTCCACCCCTACCGTTTATTAACA
TTTCGACACACATCCAGGCCAGGTAGGCACCCCAGAGTAACGACTTTGAA
TTCTTATTTCCTTGACCAATACAATGATTCTTTGATTAACTTGAACAAAA
TACAAGAGAAAAACGTCTAAACTTCTTAACACTTCATCTATATCTTGGGT
CATTTTAATACTTTGTGAAATATTTTCTTTCTCGCCCCACGGAAATGACC
ATATTTCTAAATCTTATGACATTATTTCACACAGTTCTAAGAGTTTTTGT
ATGTAGAGATTATGAGCTTTGTGAGAGTCGCGTCATGTGTGAACGTGAGT
TGACAACATCTCTCTCCGTATAAAAAACACTTTTTAAAATACTTGCTTGC
TTCTGAGGTTTTATGTAAGTGATGTTCAAGGTTCGGTCTTAACTACAAAT
GAATTACAACGGCTGGTTGGTTTAACGAGTTATAAATAATTTGAATTTCG
GGCTTAAATGGTTCGCTTTCTTTCCAGCTTAAAATAACGATATCGAACAC
AAGAAAAAACTCCAAGAATCAACTATGGAGACGATACCAGAAGGATTATT
GGGACCTCGAAAGAAATCAAATTCGTTCAATAATCGCTTCACTGAGCAAA
CACGATCTTTGACACGTTTAAACCCTGAAAGCATATTAAAGAAATCACCA
CTTCAGCGATCACAATCTACCGCCAGTATAGAGAACGTTCTTCACAACGC
TGTCTTAAGGGAAGACCATGAGGCGGTAGTCCAAATTCTGAACAATAATT
TTCTTGATATAAACGCTTTATCAATTGATGGTTTTACCTCACTTCACCAA
GCTTGTATAGTGGGTAATGAAGAGACAGTTAAGTTACTAATCGAGGCAGG
GGCAGATATAACTTTGAGGACACGACGCAAGAAACATGAATCACCTTTAA
AGTTAGCTTACCTGAACGGCAACTTCGAAGTCGCGGAATATTTGTTATCC
CTTGGTGCACATGATGCAGAAATTAAAAACGGAATGTCCAAAAAATGTTT
CGGAAGAGCAAACACTTTGGCTTCGTAAAATGGTTTTGAGAATCGTGTTT
TTTGGGGAAGACTGCTAAATAGCCGCTGAACTTTTTCGAAAAAATTGGTC
CAATGGCGTTGAGTATCAATGCATGTTTCTCTGCATCCTTGAAAACAGTG
GTATAGCCTGGAACTGAGACCACGATTCCTCTTCCTTTTTAGAAGTCAAA
TTTGTTTCAGGGTCTTAGAAGTTGTAAATAGTCAGTAAGTTTAATTTTCT
TGAATATTTTGTAACATATTTTTTGTGAGGTTCCAATATAAGGAAACTAT
GATTTAAAAGGTAAATTTTAAATAGAGCCATCTGATAAAGACTTATTACA
GAAACCTATTAACCCTTAAAGCTTGATGAAAGTGTATTCGAATTTACCA

Coding sequence (CDS) from alignment at sc0000044:137756..140454-

>TCONS_00004395 ID=TCONS_00004395|Name=TCONS_00004395|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000044:137756..140454- (Clytia hemisphaerica)
ATGGAGACGATACCAGAAGGATTATTGGGACCTCGAAAGAAATCAAATTC
GTTCAATAATCGCTTCACTGAGCAAACACGATCTTTGACACGTTTAAACC
CTGAAAGCATATTAAAGAAATCACCACTTCAGCGATCACAATCTACCGCC
AGTATAGAGAACGTTCTTCACAACGCTGTCTTAAGGGAAGACCATGAGGC
GGTAGTCCAAATTCTGAACAATAATTTTCTTGATATAAACGCTTTATCAA
TTGATGGTTTTACCTCACTTCACCAAGCTTGTATAGTGGGTAATGAAGAG
ACAGTTAAGTTACTAATCGAGGCAGGGGCAGATATAACTTTGAGGACACG
ACGCAAGAAACATGAATCACCTTTAAAGTTAGCTTACCTGAACGGCAACT
TCGAAGTCGCGGAATATTTGTTATCCCTTGGTGCACATGATGCAGAAATT
AAAAACGGAATGTCCAAAAAATGTTTCGGAAGAGCAAACACTTTGGCTTC
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002457XLOC_002457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004395-proteinTCONS_00004395-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004395-exon-sc0000044-1575043694:140426..140454TCONS_00004395-exon-sc0000044-1575043694:140426..140454Clytia hemisphaericaexon
TCONS_00004395-exon-sc0000044-1575043694:137756..138677TCONS_00004395-exon-sc0000044-1575043694:137756..138677Clytia hemisphaericaexon
TCONS_00004395-exon-sc0000044-1510915933:140426..140454TCONS_00004395-exon-sc0000044-1510915933:140426..140454Clytia hemisphaericaexon
TCONS_00004395-exon-sc0000044-1510915933:137756..138677TCONS_00004395-exon-sc0000044-1510915933:137756..138677Clytia hemisphaericaexon
TCONS_00004395-exon-sc0000044-1491911889:140426..140454TCONS_00004395-exon-sc0000044-1491911889:140426..140454Clytia hemisphaericaexon
TCONS_00004395-exon-sc0000044-1491911889:137756..138677TCONS_00004395-exon-sc0000044-1491911889:137756..138677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:137756..140454 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.641363	0.114048	0.649645	0.423717	0.0644794	0.152857	0.570324	2.52225	3.26362	0.690116	1.98611	2.06435	1.19741	4.06195	0	0	0.0238306	1.87363	9.59754	7.481	10.7969	0.0946131	0.694661	6.42953	0.00233847	4.73007	1.63905	0.839635	1.59208	0.833414
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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