TCONS_00004367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004367
Unique NameTCONS_00004367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004367 ID=TCONS_00004367|Name=TCONS_00004367|organism=Clytia hemisphaerica|type=transcript|length=795bp
CTAGAAAAAGAGAGTTAGCACTCAGGTTTTAATTTAATCCAAAATGGCGG
CTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAGATGCAGT
GTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCTCATCACATTTTTA
TTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAATTTAACCTTCCCGA
AACATGTAGAAGATATTGTTGATTCCATTGAAAAACTGAACCTACTGGAG
GTCTCATCGTTAAATAAATTGTTAAAGGAACGATTGGGAATCTCTGATAT
TCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACCAGTTGAAGAAG
AGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAACTGATC
AAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaaaaccaT
CCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATTTGTCGAAAGTGCTC
CACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATGCGGAAAAATTGAAA
GCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATTGAATAATCCAGAAC
TTTGGCAATATATGTGTTTCCTTCCTTTATCCATTGTATGTATAAAATTT
CTATCACTaagctttttattttaataaaaaaagaaattatcctAACAAAA
GAAAACGGAATTTTTTAAGATGCTCCATCATTCACTCATCCGtggtgttt
tttcaattttacttgCTTTAGAAAAATGCCGACTGTAAGCAAAGT
Run BLAST on NCBI

protein sequence of TCONS_00004367-protein

>TCONS_00004367-protein ID=TCONS_00004367-protein|Name=TCONS_00004367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MAARLVHFTRTCAQLSRCSVCRMLNKTRPAASSHFYSTEPLEAPASGNLT
FPKHVEDIVDSIEKLNLLEVSSLNKLLKERLGISDIPMMASAGPAAAAPV
EEEEQAPVEAQTEFGVKLIKFDDSKKVKLIKEIKTILTDVNLVQAKKFVE
SAPQVVKEKLSKEDAEKLKAQLEGVGASVEIE
Run BLAST on NCBI

transcript from alignment at sc0000044:507482..516443+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004367 ID=TCONS_00004367|Name=TCONS_00004367|organism=Clytia hemisphaerica|type=transcript|length=8962bp|location=Sequence derived from alignment at sc0000044:507482..516443+ (Clytia hemisphaerica)
CTAGAAAAAGAGAGTTAGCACTCAGGTTTTAATTTAATCCAAAATGGCGG
CTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAGGTATTAA
TttccttaattttttttaaatttgaaattctgCATATAGTTTACGTTTTC
TAAAACTGTTGTTGGTTATAAACACCCCTCCCTTTTTTCACTATCCAGTT
GTCTTCGTCATATTGCCTATTGTatcaaaaataatatttcaatttttttt
tgtaaaagttgaCTGCTGCGTGCTGgtagccattccagggtcaaattgaa
actattttggtgacaatcaaacctaattcatcttgtagagcttcaaaaaa
gaaaaaaaatgaggggtcatacacctcctaatgataagcggttccagaga
tattgagatttttgGTTCATTccgctaaaatagcaccttttttatagaca
ttgggctcttccagaaaaaatttgatatagggaaatccagtcaatttttc
aaagtgcttcGGAAATTctgctcaattttttatttcaacccttggaaatt
ccacataatttgtcaaagttttgaaaaaggtatcggaaattccagatttt
tgcaccaaaaaattgattttgtatcgGAAAGCCAggagtttcaattactt
ttgtATTGGGAATTGCCGCGCTCGctatttcaatttgaaaacttgtaaac
acttGTAAGCGCAGAGGTTGACAATTAGGAATCCAGAAGTGGCAAGAGGG
GTCTCCAACTGCAGACTTTtaaatcaaattctttttgtaatggttTGCTA
AGGCGgatctttaaaaattgtttggttcccgtcatttcgactttaaaaag
tgggtcggtcggtcggtcggtcgaaaatatttttttgtacatataCAGTA
CTGTCTTTGATCATTGAAGGTACCTGCATTGTGAGCCCCATAATCATCAC
GCAACATCTTGATTTTAGAAAGTGTTCCTTCGCGagcacgaccctcgaca
tggcccgagaattctcgggccaaaacttttattggaattcgcgtaaagcc
cgagtatggcccgagctggcccgagaattctcgggccaaaacttttattg
gaattcgcgtaaagcccgagtatggcccgagctggcccgagaattcgggc
cgttttcgggccacacgcgggccatgcactggccaatttttgaaaacatg
atttaaacagctACAGGcatgtaatttcaggactgaatttttttaacatt
ttctttgagaaaaacttggtttctcttaattatattgaATACagtatatg
aatgttgtaaattcatataaatattaaatgtcttatttggtatgaaaaca
taataaatatacttagggtggaaatatttgctagtagactggtcctggtt
ttaaactgaagcgtgtccacgggaaactcgtaaagtttttttgagcgata
taaacaaaacagacaaatcttatttcgtactattttgtttgactggacat
gctgaatcaatttaacatttaacatggcccgaacatggcccgaatgactc
gggtcatgttcgggccaaaagaattgatagggtctctcggcccgagcatg
gcccgaagaggcccgagaattctcgggccatgtcgagggtcgttcgCGAG
CGTGGTCTGCTTCCACCCGATTATGAAATCAGGTTAAAAAATCGGTAAAt
catggataaactggtttttggTTCACTTTCTGCTGGCGTGCCGCGCTCGc
tatttcgatttgaaaacttgtaaacacttGTAAGCTCAGAGGTTGACAAT
TAGGAATCCAGAAGTGGCAAAAGGGGTCTCCAACTCTCCGACTCTAACTT
CAGAGtaaaaatcagggtcggtcggatggcgggaaccaaacaatttttag
agATCCGCCTAAGGCGTCAATCACATATAAGTTGTGTTCGCGCCATTTCC
AGTGCCAAAAAGTGAATCGGTTGGTCGGTCGGCACTAAAATCGTAGGAAA
AGTACGCTCTGAAGCAGTCAGTCACCACTAGAATCATAGGTTTGTTCGCG
CAGCAAGAATTTTCAAGCGCACTAGCTGCATTATGATCTTTGTTACATAT
CACGATTGCAAAAAACAGTCGCATAGCGCTTTTTAAcgcaaacaatcttt
gaaaaattacagacGGAAAGCTTCTTTGAACAAACACTGGATGATCCAAT
CGGCGACTAACGATGAATGTacaaaatgctttgaaaaatattggtaaaaa
aggATTTCCGActgaatattgtcggatttttaagattgaaagtgagtcgg
tcggacgACGTGAACACAACTTATTTGTGATCTACGCctaacacttcaag
gaagaaatgaaaagacaaaaaacaataagaacgttataaagcggaagtta
aaattgctgaacctacctatctttgtaatcaaagcgctgcggaggaaaaa
ttccccatggcatataaataactgttttaggctaaaaaagggtcaaattt
ttcagtggtaccagtctctataattctagtcctcatttccaggctgaaaa
tgcttgccaaagtacgaaaagtaaaaaaaataataactttaataaaagaa
ttaatttcagagagtagcaccattggatttctcaggtattttctgataaa
tatggaaagtttcactgtctgaacattttttcctccgcagcgctttgNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgga
aagtttcactgtctgaacattttttcctccgcagctgtttgaaatcaaag
atgagttgtgaatttttttgtgtcccgcagatctaatttttctaaaaatt
ttgaccttagttggaacaaatttttagacaaaagtgtagaatattacacc
tgcatatatatatggttggaaagctaaaagaaagctctaaattactcaaa
aataattaattttatagctcaactacacaaagaacaattgcttgtcaaag
ttggacctaaaattgaagattttcatgagcgtcaaataaaaaacaagcaa
aacccGGAATGGCTACTGCTGGGtggttattattattttatacagctttg
aaaaagaaagaaaacgagGGGTCATAGGGCtccagagctgcgtagttgtc
tgagggctatgcatgttagcctccactcatgcaagttacctgatctcacg
gtacttaggcaaaaatggatgataggtatgtgcggacggtaagggtcggt
tttttcacctttcaaagtgtctctctaagggtcggaaaaatcagaaagtt
ttaaattagtctctctaagggtcagaaaattcAGGACTTTTAggaacttt
ttttatttccagagaaaaaattgtaataaagtctctctaagggtatgact
tttttcaaaaatcataaaaagaaatttcaaaaagtctctctaagtaagag
tcaccttttcagcaaaaatcagtctctctaaggttcggttttcggaggtc
atgtccgcacatacccctcattttgttcacaaactccactgaaagcaatt
tcacttgctttcaccttcGCGAGCACAAATTCACAACTTgaaaagtacag
ttttgaattaggttttataaaaaactattttttcattagCCAGGGCGCTG
GCTTTGGGGTCTGAAGCTTATCAACCCAATactataaaaaatttgaaagt
gttTTGTCGAGGACCCCTACAGTGTAATCTCCTTATCACGTCAtagattg
ggccattccagaaaatttttgttacccctgTTGGACAACGCACATTTTTT
TTAGCcctggaaatatttttttttcagtggtggtcggaaattcagatcaa
aatccatgtacttttgcaaaatgtgTCGGAAATCCTAGCTCTTTTTGCCC
TCAGGATTCCGTGTCTtccgccccctgttacagacaaattctgaaATGGT
CCATTGTTGATGCAAGAAATATGATAAGTATCATTTTcttgaaagaaaac
tttaacgattaCTATACTGTAATTAGCATTCTTTCCAGAAAGATATCAAG
ATCCAAACAACTATTAGCACACAACAAATTTTTTAGTAAGCCTTTTTACC
CTGAATCAAAAATGATAAAGAGAACctggtttccttttgaattttaatgt
gaccgccatactggcaACCAACTCTGCCCTGTCAGGAGAAATAAGGGCTT
GGCTACaccagaaaaaattttaaagttcTCATCCATTCCATTCTTTCATC
ATATCTAGATGCAGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGC
CTCATCACATTTTTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTA
ATTTAACCTTCCCGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAA
CTGAACCTACTGGAGGTCTCATCGTTAAATAAATTGTTAAAGGTATTTGT
GATTGCCTTTTTCAAAATACTTGAGAATCAGTTTGTTTCATGAGTGCTCA
AAGTTCCTTCCTCTTCTTTTGGGACATTTCATCATAGATGTTTTGGCTAT
TTTATCTTTTCCGAAATTTTCTGTATAATTATTATTTAAGTAGGGCGAAT
AGCCATTATAAAATGTTGAAGAACCTGAAAGACAGTAGttattaaaaatg
ataaataaaaaattgagcatGTCTTTTAAATAGAAAGGAACTCCTCATCT
CTGGTCGATTTTCCAAAATGAGTGCTTAGATGAAAACTCGCCTTGAGATA
GATCACTGCGGTACATTTTACTTTACAATACTTTGAATTCCATTTCCTGC
TGAACAACTTCGTACTgtaatttttcttctgttttttcAGGAACGATTGG
GAATCTCTGATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCA
CCAGTTGAAGTATGTAGGCACCTAAAATTTACGTCACTTTAATGATGTAT
GCATGGTTTTACAGTGAATATTTTAGTTAATTGTTAACTCTCATAATTGT
TGATGAACGTTTAAACAAGTGTCTCACTGTATTTTTAAAACGAGGGCTTC
ATTTGACAAATGATAGTAACAAATCAAGCCCTTGTTTGAACAGGGTGTCT
ACAGGAccttaaaaaccttgaaattggactaaacaaccttgaaaaccttg
ttAAAGTGAATGTAATATGAGAGaattccttgaaaaccttgaaaatgcat
GATTGTGACAGTATAGTCTTGTTTTGACTTGGGGTTCTCAATGAAGTTTT
GGTCTATGCTAAAgttccaaatattttcttgctcgcttcgctcgcaatct
TTGTTTCTGCATCAAATTAACGTCCATGCACTTCAGCATAGTCATATCCT
ACTTTAAGTCAATTTTAGTcctgaaaaactttgaaaataccTAATAAAgg
gtccaaaaaaccttgaaaaaaaatttgccaaaaaaaaccttgaaaacctt
gaaaatggtgGAAAAAATTCCGTAGATACCCTGTGTTATTTCATGGTGTC
CTACAGGTTTTCAGGTACCTCAATTCCTTCTTCCCACATAGGAAGAGGAA
CAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAACTGATCAAGTT
TGATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaaaaccaTCCTCA
CTGACGTCAATCTTGTCCAGGTATTTAataagtatatgtaatcacatgat
aacgagtgcaattagAGAATGATTGCACTAGTCCTTTtgggcataccgga
taagtgggattgGGGAACCTgagaacctaaagtgggaacctaaatgaaca
cctgaaaagtgggatgggggaacctaaagtgggaacctaaatgaacacct
gaaaagtgggatggggaaacctaagtgggaacctaaatgaacgcctgaaa
agtgggatggggaaacctaagtgggaacctaaatgaacgcctgaaaagtg
ggatggggaaacctaagtgggaacctaaatgaacgcctgaaaagtgggat
ggggaaacctaagtgggaacctaaatgaacgcctgaaaagtgggatgggg
aaacctaagtgggaacctaaatgaacacctgaaaagtgggatgggggaac
ctaagtgggaacctaaatgaacaccggaaaagtgggatgggtgaacctaa
gtgggaacctaagttgtttaattattaatagaattgaaatatttttcttt
aaaaacaaatacataatgataagaaagatattatatgcaagtaaagaaaa
aaccttttatcataataagaacaccagttatttactttttacattacggt
tcgcaaacaataatgttgaaaataaaacaaagggaatttatTTATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATTTattcaattagctcaaaaaagcatgtttatttatcagcag
ttttatagtgcatctttttgaaaggttctttttagtaaattgaATTAATT
GACTgtaaactttaaactttaaaccgtcatatcttcaaatctagaaggaa
ttagaagtttgttcatagctcgatggataacttagagcctcttctttctt
ttgcacgGATCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtcaattttgtaaacattggcgcggcattgaagagtgtgattaacg
attaattgctctctttgagggcgtgccaaataagaaaaaataacccatcg
tgcgattaagaAGATAACGACCATTtattacagtcaactctctctagttc
gaacttcaacttttttaaattattattcTACTTCCATTATTCTAATCTTT
GTGCATTTACGGAAACAGAAAGTGGTTTGAATTGTTCTTagtaatttgaa
tttttctctaattcgaagaaaattcttggtcctttgaagatcgaataaga
gagagtcaATTGTATGCCTTTTCTTatggggatgagctggagtttttata
agatacttcactaattaattggtcatttgaagtaatagagatgacgcgtt
ctttagaaaaagtaatgaaattaacttaacgaccaaccaaatcacataag
agcttgtaaaaactccagcttgtcccttcTTATGAGAGCCATGTATCAAA
AAATGACGACCAACACAGACTTTTTTATTAATCGTTTTACAGGCCAAGAA
ATTTGTCGAAAGTGCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAG
ATGCGGAAAAATTGAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAG
ATTGAATAATCCAGAACTTTGGCAATATATGTGTTTCCTTCCTTTATCCA
TTGTATGTATAAAATTTCTATCACTaagctttttattttaataaaaaaag
aaattatcctAACAAAAGAAAACGGAATTTTTTAAGATGCTCCATCATTC
ACTCATCCGtggtgttttttcaattttacttgCTTTAGAAAAATGCCGAC
TGTAAGCAAAGT

Coding sequence (CDS) from alignment at sc0000044:507482..516443+

>TCONS_00004367 ID=TCONS_00004367|Name=TCONS_00004367|organism=Clytia hemisphaerica|type=CDS|length=2745bp|location=Sequence derived from alignment at sc0000044:507482..516443+ (Clytia hemisphaerica)
ATGGCGGCTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAG
ATGCAGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCTCATCAC
ATTTTTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAATTTAACC
TTCCCGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAACTGAACCT
ACTGGAGGTCTCATCGTTAAATAAATTGTTAAAGGAACGATTGGGAATCT
CTGATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACCAGTT
GAAGAAGAGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAA
ACTGATCAAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaagaaatca
aaaccaTCCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATTTGTCGAA
AGTGCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATGCGGAAAA
ATTGAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATTGAATAAA
TGGCGGCTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAGA
TGCAGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCTCATCACA
TTTTTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAATTTAACCT
TCCCGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAACTGAACCTA
CTGGAGGTCTCATCGTTAAATAAATTGTTAAAGGAACGATTGGGAATCTC
TGATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACCAGTTG
AAGAAGAGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAA
CTGATCAAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaa
aaccaTCCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATTTGTCGAAA
GTGCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATGCGGAAAAA
TTGAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATTGAATAAAT
GGCGGCTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAGAT
GCAGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCTCATCACAT
TTTTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAATTTAACCTT
CCCGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAACTGAACCTAC
TGGAGGTCTCATCGTTAAATAAATTGTTAAAGGAACGATTGGGAATCTCT
GATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACCAGTTGA
AGAAGAGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAAC
TGATCAAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaaa
accaTCCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATTTGTCGAAAG
TGCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATGCGGAAAAAT
TGAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATTGAATAAATG
GCGGCTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAGATG
CAGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCTCATCACATT
TTTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAATTTAACCTTC
CCGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAACTGAACCTACT
GGAGGTCTCATCGTTAAATAAATTGTTAAAGGAACGATTGGGAATCTCTG
ATATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACCAGTTGAA
GAAGAGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAACT
GATCAAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaaaa
ccaTCCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATTTGTCGAAAGT
GCTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATGCGGAAAAATT
GAAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATTGAATAAATGG
CGGCTCGATTAGtacattttacaagaacatgTGCACAACTTTCCAGATGC
AGTGTTTGTCGCATGCTTAACAAGACTCGTCCAGCTGCCTCATCACATTT
TTATTCTACCGAACCACTTGAAGCACCTGCTTCTGGTAATTTAACCTTCC
CGAAACATGTAGAAGATATTGTTGATTCCATTGAAAAACTGAACCTACTG
GAGGTCTCATCGTTAAATAAATTGTTAAAGGAACGATTGGGAATCTCTGA
TATTCCAATGATGGCATCAGCTGGCCCTGCGGCAGCCGCACCAGTTGAAG
AAGAGGAACAAGCACCAGTAGAAGCTCAAACAGAATTCGGCGTTAAACTG
ATCAAGTTTGATGACTCAAAGAAAGTGAAACtaatcaaagaaatcaaaac
caTCCTCACTGACGTCAATCTTGTCCAGGCCAAGAAATTTGTCGAAAGTG
CTCCACAAGTCGTCAAAGAGAAACTTTCAAAAGAAGATGCGGAAAAATTG
AAAGCTCAACTGGAGGGAGTTGGTGCTTCGGTCGAGATTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002443XLOC_002443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004367-exon-sc0000044-1491911889:507482..507574TCONS_00004367-exon-sc0000044-1491911889:507482..507574Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1510915933:507482..507574TCONS_00004367-exon-sc0000044-1510915933:507482..507574Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1575043694:507482..507574TCONS_00004367-exon-sc0000044-1575043694:507482..507574Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1491911889:511740..511923TCONS_00004367-exon-sc0000044-1491911889:511740..511923Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1510915933:511740..511923TCONS_00004367-exon-sc0000044-1510915933:511740..511923Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1575043694:511740..511923TCONS_00004367-exon-sc0000044-1575043694:511740..511923Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1491911889:512322..512390TCONS_00004367-exon-sc0000044-1491911889:512322..512390Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1510915933:512322..512390TCONS_00004367-exon-sc0000044-1510915933:512322..512390Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1575043694:512322..512390TCONS_00004367-exon-sc0000044-1575043694:512322..512390Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1491911889:513023..513151TCONS_00004367-exon-sc0000044-1491911889:513023..513151Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1510915933:513023..513151TCONS_00004367-exon-sc0000044-1510915933:513023..513151Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1575043694:513023..513151TCONS_00004367-exon-sc0000044-1575043694:513023..513151Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1491911889:516124..516443TCONS_00004367-exon-sc0000044-1491911889:516124..516443Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1510915933:516124..516443TCONS_00004367-exon-sc0000044-1510915933:516124..516443Clytia hemisphaericaexon
TCONS_00004367-exon-sc0000044-1575043694:516124..516443TCONS_00004367-exon-sc0000044-1575043694:516124..516443Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004367-proteinTCONS_00004367-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:507482..516443 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
163.989	157.362	94.462	81.6557	118.14	92.8394	85.6981	85.1846	88.5488	83.2767	78.0368	94.6028	58.8457	71.5201	62.6895	73.9912	154.151	169.368	27.9359	31.4723	101.255	101.655	105.377	92.6488	103.612	97.2866	58.2063	47.4357	60.5031	54.275
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013823Ribosomal_L7/L12_C
IPR008932Ribosomal_L7/L12_oligo
IPR000206Ribosomal_L7/12
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00004367 vs. Swiss-Prot (Human)
Match: RM12 (39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.290e-21
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 2 
Query:  194 FPKHVEDIVDSIEKLNLLEVSSLNKLLKERLGISDIPMMASAGXXXXXXXXXXXXXX-------XXXXTEFGVKLIKFDDSKKVKLIKEIKTILTDVNLVQAKKFVESAPQVVKEKLSKEDAEKLKAQLEGVGASVEIE 589
            +P  ++ +V  I  L LLE+S LN+LLK+ L I D+ ++   G  + A      Q          + +T F V+L +     KVKLIKEIK  +  +NLVQAKK VES PQ +K  ++K +AEK+KA LE VG +V +E
Sbjct:   60 YPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 198
The following BLAST results are available for this feature:
BLAST of TCONS_00004367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM121.290e-2141.0139S ribosomal protein L12, mitochondrial OS=Homo s... [more]
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