TCONS_00004364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004364
Unique NameTCONS_00004364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004364 ID=TCONS_00004364|Name=TCONS_00004364|organism=Clytia hemisphaerica|type=transcript|length=898bp
GAAGAACTTAATGATAAATATTTGCTGTGGCCTTGACTTAAGCTAACAGA
GAGTAAGCCGTTTTTTCGATTCAATTTAAATACACTCGTGTCTCTCGACA
GAAAAAATGATAACAATAGACTGAGGAACAGCCTACATTaagtaaatatt
tcaaataaattcTAACCACCTTTCCTCTAGACAATTTTGATATCGgtaat
tcaatttttgaacgATTCATTAAAGATGAAACTTTCTACGAAAATGATGT
TGAAAAGCCTGACAATCCTATTGTTGTATCTGGTGGTTATATCGGAGGCT
GCTGACCCAAAGTGTTGCATTGACTTGCATGGAGGTTGCTCTGAAATAGC
AAGTTGGATGTGTGATCATCAAGGCATCAAACCCATATGTCCAGCCACCT
GCAAACTATGTCATGTTTCTGCTCCACCTTATCAAAACAATCGAATCACA
ACATCAAAGAGGAAAGTGGATACTGTTAAAAGGTTATGTGCTAGTGAACA
GAACAAGTATGCTGGTGTTAATCTTGAGTTTCATTATCGGATGTCATACT
ATGCACAACTTTACGCTGAATATATGGTCAAAAACGGATTGACCAGCAAA
CATGATTGTATGAAACGATTCAACTTTCCTGGTTTAACAACAATGGTTGG
CAATCTGAATGCTTTTCAGGAAGATCAAGACTTGGGGAAAGCTCTTAAAT
TATCCATCAAAGCCTGgtATAATTCTGGTTCTAACATGAAAAACGCGATG
ACTGACAGTCAATACGTTGGATGTGGTGCAGCTTCGAATGGGAAAATTAC
CAGAGTTGTGTCATGgtatggtaatgcccaaaaatgAAGAACCACAAAga
ttattgatatttttaggaaatagtTTATGTTATTTTCAAACATGTTGG
Run BLAST on NCBI

protein sequence of TCONS_00004364-protein

>TCONS_00004364-protein ID=TCONS_00004364-protein|Name=TCONS_00004364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MKLSTKMMLKSLTILLLYLVVISEAADPKCCIDLHGGCSEIASWMCDHQG
IKPICPATCKLCHVSAPPYQNNRITTSKRKVDTVKRLCASEQNKYAGVNL
EFHYRMSYYAQLYAEYMVKNGLTSKHDCMKRFNFPGLTTMVGNLNAFQED
QDLGKALKLSIKAWYNSGSNMKNAMTDSQYVGCGAASNGKITRVVSWYGN
AQK
Run BLAST on NCBI

transcript from alignment at sc0000044:338050..341837+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004364 ID=TCONS_00004364|Name=TCONS_00004364|organism=Clytia hemisphaerica|type=transcript|length=3788bp|location=Sequence derived from alignment at sc0000044:338050..341837+ (Clytia hemisphaerica)
GAAGAACTTAATGATAAATATTTGCTGTGGCCTTGACTTAAGCTAACAGA
GAGTAAGCCGTTTTTTCGATTCAATTTAAATACACTCGTGTCTCTCGACA
GAAAAAATGATAACAATAGACTGAGGAACAGCCTACATTaagtaaatatt
tcaaataaattcTAACCACCTTTCCTCTAGACAATTTTGATATCGgtaat
tcaatttttgaacgATTCATTAAAGATGAAACTTTCTACGAAAATGATGT
TGAAAAGCCTGACAATCCTATTGTTGTATCTGGTGGTTATATCGGAGGCT
GCTGACCCAAAGTGTAAGTAGAAACCCCTTTAAAACCTTTACAGCTGAAC
GAGTCtgtccaaattttttctttttatttaacgCTGTGCTGAAATGGAAC
GCCAAACCTTTTCTCAGCTCCAAGTAACTTACCACATAGTTCAGATTACC
CATCTAAGCCATTCGCGGAAGTGGCAGTGACTGGGAATCGTACCTATATC
CCTTTGACATACTTACAAATGCTCTACCAACAATATTAGAGAGCAGCAAT
TGCCGGACTGTAGAGGGAGACCTAGGTTCCAGACCTAGGTCGAAGGATGG
GAACCTTGTGGTAATCTTGAAGTTAAATGTACATTTATTACAGTGGAGTC
TTCACCCgggatttttgctgaaaaagtgaccgttagagagactttttgaa
ttttttttttcgatttttgaaaaaagtcatacccttagagagactttatt
acaattttttctctggaaaccaaaaaatttcctaaaagtcctgaattttc
cgacccttagagagactaatttaaaactttctgatttttccgacccttag
agagactttgaaaagtgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGAGTCTTCATCACTCGAACACTCACAGAGA
ACACAAATATGTTCGAGCTAATGGAATTTTgagttatagagtaaggttta
taaggtattgttaactgaagggatcacTAAACTTGTTCGAGTAAAGGAGC
AGACATTTGAGTTGTCCAGGttagagttaaagagactcaactgtatttTA
TTCTTGTTTTTTAAGGTTGCATTGACTTGCATGGAGGTTGCTCTGAAATA
GCAAGTTGGATGTGTGATCATCAAGGCATCAAACCCATATGTCCAGCCAC
CTGCAAACTATGTCATGTTTCTGCTCCACGTAAGAACTTTAAAGTCCACT
ATTTTATCATAAACGTGTTGTCGAGAGCTAGACTCGAAGCTTTTGGGAAG
GAAATCCTGGGGGGGGGCTCTCAAGCAATGTTTTGCCACCTGTCTTAAGC
AATGATTTGATATTTTGTGTTTCTTCTGAAATTATCAGAAATTATCATAA
ATTTATTTCTACCTGGCTAGCTTATCAAAACAATCGAATCACAACATCAA
AGAGGAAAGTGGATACTGTTAAAAGTAAGTTCCAATTGATATTTGGATAG
TACGAAATATTATTATAACGACCTCTGCCCGATGTGGATTCGTAGTCGTT
CTATTTGATTCGGAGAACTATTACTTCAAAAATCTAGTGAAATAGATCAA
ATTACAAAGTGCCCGATTTCGAGAGAAAATGTCAAGAAATAAAAGGCTAC
ctgaaaggaagaaattttggtgggaatttaatttgacagatggcttgaaa
atcaaatcttgcgggaatttaatttggcggatgaagaATACTTTTGACCA
AAAAACCCTATTGAATAAGAAAAGAACTTGTTTCAAAGTCTGCAATAGCA
TACATTTTGGGAATGAATACAATAATTTGAATTTAGCGGATggcaaaaga
aatcaaattcgGCGAGAAtctaatttggcggatttttgCCAAAtccgcta
aaatttcttcctttaaggtaactTACAATTGCTACGTTGTAAGACAATGC
AGTAAATTGCAGATTTTATTCCAAGAATCTAGCATGCATGCAAGTTTTCA
TACCACGTTCGCTAACAAACTCAAGTGACTTAATTAAGTACGTTTATATA
AAACCCTCGGGATAACTAGGCAACATTGTATGTGGTTTGGGCATCACCTT
AATAGTGCCTTTTTAGGACCTTCAAAATCCCAAAGGGGtaaaattcaaaa
ggttataTTTTGGAAAGAGCCTCCGGTAACAAAAATTCCTCTCCTCTCAC
TTCCCTGAGAGAAAAAGGTTACCTAATTTTCTTTTAGGGTTATGTGCTAG
TGAACAGAACAAGTATGCTGGTGTTAATCTTGAGTTTCATTATCGGATGT
CATACTATGCACAACTTTACGCTGAATATATGGTCAAAAACGGATTGACC
AGCAAACATGATTGTATGAAACGATTCAACTTTCCTGGTTTAACAACAAT
GGTTGGCAATCTGAATGCTTTTCAGGAAGATCAAGACTTGGGGAAAGCTC
TTAAATTATCCATCAAAGCCTGGTAAGGAGAATTAgattttaattatttt
ggcGGAGGTATCTTGGTTATTCAGGAAAAAGAATTAAGGAGTCCCCCCCT
CCGGGTGCGTTTCGTGTCCAAATTAAggtaaaaaactataagaatttcca
aaatttaacccataaaacatttttttcactttttacacccttagagaaCC
TATTCTCTCATCTCTGTTCATTTCTACCCTTACGGCAACCTGAAAATCAC
ACCCTTAAGGGCCTCTCATACGGTAGCTCGTTAACCTGGAGTGTCCCCTT
TTATTATTAAGTTCCTCTGGGTTTTTCTCCATTTCACAGAGACCCCTTGG
GTTGTTATCTGAAATTCCATATTGACTATCCCTGAATTCTCAAGATTTTT
GCGGCAGCCTCTGGATGGAAAATGACTTCCCCATGAGGGTAAATTATTCA
TCTGAAATAGCCCATTGAAAAGAATGTCCCATGCCATTTCTGTTGAAAAT
GTAGCCTTGAAGCTGAGCTTAAATACAAATCCTTGACAATATATTTAAGA
AAGCGGTCTAAGGAATAACAATGGGACTGTTTTGATTACTTATCTTTGTG
ACCAAAAtagtagacgatgttatcgtccgttacagtgatagtaaaggcgg
gaaaatatggcggtatggcgttatggcggtatacgggaactcttttcggc
aaaaaaacccgtttgcgaattttcttcggctttgggcttttttcttagat
agtgattcgtcttagactataacatagtctaccAAAATAGTTGAGAATAG
TGAGCCTATATTTGTAGATTCTTTCGAAAATggtttactcattttttttc
ttcaaggtATAATTCTGGTTCTAACATGAAAAACGCGATGACTGACAGTC
AATACGTTGGATGTGGTGCAGCTTCGAATGGGAAAATTACCAGAGTTGTG
TCATGgtatggtaatgcccaaaaatgAAGAACCACAAAgattattgatat
ttttaggaaatagtTTATGTTATTTTCAAACATGTTGG

Coding sequence (CDS) from alignment at sc0000044:338050..341837+

>TCONS_00004364 ID=TCONS_00004364|Name=TCONS_00004364|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at sc0000044:338050..341837+ (Clytia hemisphaerica)
ATGAAACTTTCTACGAAAATGATGTTGAAAAGCCTGACAATCCTATTGTT
GTATCTGGTGGTTATATCGGAGGCTGCTGACCCAAAGTGTTGCATTGACT
TGCATGGAGGTTGCTCTGAAATAGCAAGTTGGATGTGTGATCATCAAGGC
ATCAAACCCATATGTCCAGCCACCTGCAAACTATGTCATGTTTCTGCTCC
ACCTTATCAAAACAATCGAATCACAACATCAAAGAGGAAAGTGGATACTG
TTAAAAGGTTATGTGCTAGTGAACAGAACAAGTATGCTGGTGTTAATCTT
GAGTTTCATTATCGGATGTCATACTATGCACAACTTTACGCTGAATATAT
GGTCAAAAACGGATTGACCAGCAAACATGATTGTATGAAACGATTCAACT
TTCCTGGTTTAACAACAATGGTTGGCAATCTGAATGCTTTTCAGGAAGAT
CAAGACTTGGGGAAAGCTCTTAAATTATCCATCAAAGCCTGgtATAATTC
TGGTTCTAACATGAAAAACGCGATGACTGACAGTCAATACGTTGGATGTG
GTGCAGCTTCGAATGGGAAAATTACCAGAGTTGTGTCATGgtatggtaat
gcccaaaaatgAATGAAACTTTCTACGAAAATGATGTTGAAAAGCCTGAC
AATCCTATTGTTGTATCTGGTGGTTATATCGGAGGCTGCTGACCCAAAGT
GTTGCATTGACTTGCATGGAGGTTGCTCTGAAATAGCAAGTTGGATGTGT
GATCATCAAGGCATCAAACCCATATGTCCAGCCACCTGCAAACTATGTCA
TGTTTCTGCTCCACCTTATCAAAACAATCGAATCACAACATCAAAGAGGA
AAGTGGATACTGTTAAAAGGTTATGTGCTAGTGAACAGAACAAGTATGCT
GGTGTTAATCTTGAGTTTCATTATCGGATGTCATACTATGCACAACTTTA
CGCTGAATATATGGTCAAAAACGGATTGACCAGCAAACATGATTGTATGA
AACGATTCAACTTTCCTGGTTTAACAACAATGGTTGGCAATCTGAATGCT
TTTCAGGAAGATCAAGACTTGGGGAAAGCTCTTAAATTATCCATCAAAGC
CTGgtATAATTCTGGTTCTAACATGAAAAACGCGATGACTGACAGTCAAT
ACGTTGGATGTGGTGCAGCTTCGAATGGGAAAATTACCAGAGTTGTGTCA
TGgtatggtaatgcccaaaaatgAATGAAACTTTCTACGAAAATGATGTT
GAAAAGCCTGACAATCCTATTGTTGTATCTGGTGGTTATATCGGAGGCTG
CTGACCCAAAGTGTTGCATTGACTTGCATGGAGGTTGCTCTGAAATAGCA
AGTTGGATGTGTGATCATCAAGGCATCAAACCCATATGTCCAGCCACCTG
CAAACTATGTCATGTTTCTGCTCCACCTTATCAAAACAATCGAATCACAA
CATCAAAGAGGAAAGTGGATACTGTTAAAAGGTTATGTGCTAGTGAACAG
AACAAGTATGCTGGTGTTAATCTTGAGTTTCATTATCGGATGTCATACTA
TGCACAACTTTACGCTGAATATATGGTCAAAAACGGATTGACCAGCAAAC
ATGATTGTATGAAACGATTCAACTTTCCTGGTTTAACAACAATGGTTGGC
AATCTGAATGCTTTTCAGGAAGATCAAGACTTGGGGAAAGCTCTTAAATT
ATCCATCAAAGCCTGgtATAATTCTGGTTCTAACATGAAAAACGCGATGA
CTGACAGTCAATACGTTGGATGTGGTGCAGCTTCGAATGGGAAAATTACC
AGAGTTGTGTCATGgtatggtaatgcccaaaaatgAATGAAACTTTCTAC
GAAAATGATGTTGAAAAGCCTGACAATCCTATTGTTGTATCTGGTGGTTA
TATCGGAGGCTGCTGACCCAAAGTGTTGCATTGACTTGCATGGAGGTTGC
TCTGAAATAGCAAGTTGGATGTGTGATCATCAAGGCATCAAACCCATATG
TCCAGCCACCTGCAAACTATGTCATGTTTCTGCTCCACCTTATCAAAACA
ATCGAATCACAACATCAAAGAGGAAAGTGGATACTGTTAAAAGGTTATGT
GCTAGTGAACAGAACAAGTATGCTGGTGTTAATCTTGAGTTTCATTATCG
GATGTCATACTATGCACAACTTTACGCTGAATATATGGTCAAAAACGGAT
TGACCAGCAAACATGATTGTATGAAACGATTCAACTTTCCTGGTTTAACA
ACAATGGTTGGCAATCTGAATGCTTTTCAGGAAGATCAAGACTTGGGGAA
AGCTCTTAAATTATCCATCAAAGCCTGgtATAATTCTGGTTCTAACATGA
AAAACGCGATGACTGACAGTCAATACGTTGGATGTGGTGCAGCTTCGAAT
GGGAAAATTACCAGAGTTGTGTCATGgtatggtaatgcccaaaaatgAAT
GAAACTTTCTACGAAAATGATGTTGAAAAGCCTGACAATCCTATTGTTGT
ATCTGGTGGTTATATCGGAGGCTGCTGACCCAAAGTGTTGCATTGACTTG
CATGGAGGTTGCTCTGAAATAGCAAGTTGGATGTGTGATCATCAAGGCAT
CAAACCCATATGTCCAGCCACCTGCAAACTATGTCATGTTTCTGCTCCAC
CTTATCAAAACAATCGAATCACAACATCAAAGAGGAAAGTGGATACTGTT
AAAAGGTTATGTGCTAGTGAACAGAACAAGTATGCTGGTGTTAATCTTGA
GTTTCATTATCGGATGTCATACTATGCACAACTTTACGCTGAATATATGG
TCAAAAACGGATTGACCAGCAAACATGATTGTATGAAACGATTCAACTTT
CCTGGTTTAACAACAATGGTTGGCAATCTGAATGCTTTTCAGGAAGATCA
AGACTTGGGGAAAGCTCTTAAATTATCCATCAAAGCCTGgtATAATTCTG
GTTCTAACATGAAAAACGCGATGACTGACAGTCAATACGTTGGATGTGGT
GCAGCTTCGAATGGGAAAATTACCAGAGTTGTGTCATGgtatggtaatgc
ccaaaaatgA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002440XLOC_002440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004364-exon-sc0000044-1491911889:338050..338362TCONS_00004364-exon-sc0000044-1491911889:338050..338362Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1510915933:338050..338362TCONS_00004364-exon-sc0000044-1510915933:338050..338362Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1575043694:338050..338362TCONS_00004364-exon-sc0000044-1575043694:338050..338362Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1491911889:339465..339578TCONS_00004364-exon-sc0000044-1491911889:339465..339578Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1510915933:339465..339578TCONS_00004364-exon-sc0000044-1510915933:339465..339578Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1575043694:339465..339578TCONS_00004364-exon-sc0000044-1575043694:339465..339578Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1491911889:339770..339823TCONS_00004364-exon-sc0000044-1491911889:339770..339823Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1510915933:339770..339823TCONS_00004364-exon-sc0000044-1510915933:339770..339823Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1575043694:339770..339823TCONS_00004364-exon-sc0000044-1575043694:339770..339823Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1491911889:340587..340821TCONS_00004364-exon-sc0000044-1491911889:340587..340821Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1510915933:340587..340821TCONS_00004364-exon-sc0000044-1510915933:340587..340821Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1575043694:340587..340821TCONS_00004364-exon-sc0000044-1575043694:340587..340821Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1491911889:341656..341837TCONS_00004364-exon-sc0000044-1491911889:341656..341837Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1510915933:341656..341837TCONS_00004364-exon-sc0000044-1510915933:341656..341837Clytia hemisphaericaexon
TCONS_00004364-exon-sc0000044-1575043694:341656..341837TCONS_00004364-exon-sc0000044-1575043694:341656..341837Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004364-proteinTCONS_00004364-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:338050..341837 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.67757	3.2136	2.21546	1.65413	0.347197	0.219488	0.728207	0.247905	0.954602	0.429974	0.886855	1.47461	4.5204	2.63176	49.9981	59.7429	2.31927	3.05072	7.66315	8.59171	0.19914	0.291401	1.29886	0.697779	1.0504	0.986798	0.0706053	0	0.628669	0.989885
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014044CAP_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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