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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004363 ID=TCONS_00004363|Name=TCONS_00004363|organism=Clytia hemisphaerica|type=transcript|length=1868bpRun BLAST on NCBI protein sequence of TCONS_00004363-protein >TCONS_00004363-protein ID=TCONS_00004363-protein|Name=TCONS_00004363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp MAIINSTILWTLYIGVWLSMVSLTNSAAYSIEQDLMEQVISNYIPTRPVQRun BLAST on NCBI transcript from alignment at sc0000044:321567..337545+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004363 ID=TCONS_00004363|Name=TCONS_00004363|organism=Clytia hemisphaerica|type=transcript|length=15979bp|location=Sequence derived from alignment at sc0000044:321567..337545+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:321567..337545+ >TCONS_00004363 ID=TCONS_00004363|Name=TCONS_00004363|organism=Clytia hemisphaerica|type=CDS|length=10848bp|location=Sequence derived from alignment at sc0000044:321567..337545+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004363 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5) HSP 1 Score: 157.918 bits (398), Expect = 1.527e-41 Identity = 109/337 (32.34%), Postives = 180/337 (53.41%), Query Frame = 1
Query: 142 GVWLSMVS--LTNSAAYSIEQDLMEQVISNYIPT-RPVQRNNETVHVKIQLEIVQIT-VSTKAQTLSVTGFFRLKWKNDLIHWNASHYDGINTVNIDPHLMWFPEVVLHNSLSEERTWLTKSFKTKISVSSDGTCYWLSPIDFLSSCSFSIKDFPFDTQHCKITFGPWTDDISKVYMEAIDYAVVTSQYTENAEWDLREASHEIVTSYYKCCPIPFRDLVIRLTLTRKPLFYMVNSXXXXXXXXXXXXXGHRLPPQCGERXXXXXXXXXXXXVMMEYTNSKILPQTSE-VSSFSKIFLTITIVASFSILETCYVLSLHHRSEGMLRWMPSWLTRLIL 1137
GVWL++ + L S ++ L ++++ NY P RPV +++ + V L ++QI V K Q L+ + ++ W + + WN S Y G+ TV +W P+++L+NS E +F T + V+S G C +L P F SSC ++ FPFD QHCK+ FG W+ + ++ + + S Y N EWDL + +Y+CC P+ D+ +T+ R+ L+Y +N ++PC+ + L +L LP GE+I+L I + L+ V M ++I+P TS+ V ++ F + I+ S++ T VL HH + MP W TR+IL
Sbjct: 7 GVWLALAASLLHVSLQGEFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADER---FDATFHTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQMQEADI--SGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLV-AEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGK-MPKW-TRVIL 335 The following BLAST results are available for this feature:
BLAST of TCONS_00004363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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