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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004358 ID=TCONS_00004358|Name=TCONS_00004358|organism=Clytia hemisphaerica|type=transcript|length=2186bp
TTNCCGTCAGCGGAGATGAAAAATTCCTCCATTCAGGTTCACCATGTAAC
AATTATGCTGGCTACTGTGATTTCCTCAACAAGTGTCGTAAAGTCGACGC
AGAAGGGCCACTATCACGTCTCAAGGACTTGTTCTTTAGTTCTGAATCCA
TCGATAACATTTTGGATTGGATGAAATCGTACTGGTGGGCTTGCGTTCTC
ATTGGATTGGGATTAATCCTATTCATGGCTGCATTCATTGCATGTTGCAG
CGTTCACACACCCAGCAGCAACCCCAACAAACCACCACCCCGCCACCTCA
GTATACCACGAACCATCTCAAGACGTAACCGCCAACCGCCTTCCGCCCCA
CCATCAACCAGCGGGTACAACCGCCAAGAACAACCGGAAGGGCCACCAGG
GTATGATACCGCTTTGCGGGAAGGTCATGGTTACGAAATGCGCTGATGTG
TATAGAAGATCATGTGCTAGAAACGAAAAAAAAGAtcttatttagatttt
tcacaATCTATTCTTTAcataatataaaaatgaaaaatcttttcgaGTTT
AGTCCATCTTCAAGGTTTTCCTGCCAAAGGAAGGAGGTGGGTTATGCTTC
TGCTTAGCAAGTGGCAGGGAAGTAGTTTTAGTGACCGTAGTTAAATCAAG
TCTGTGTATAAAATGCCAATATGAAAGTAACCATTTTTTGTGCACGACAT
TAATGATACAGTGACTATAAACACCTACACTTCTCTTTCATATTCTACAT
AACTATGGGAAATTAcgaaaaagaatatatttctcTTTCCAAATTATTAT
ATGCTGTTTATTCTAAAGTTATGAttgattttgtcattttttttatgtgg
caacaatttttttaagttatttgattttatttatgAGGATATTATTGATG
TAGTAAGCCTTTTTCCTTTATTCTTAAGTTGTTTTGCCTATCGAGAAAAG
TAATTAGGTCCTTATTAGGCCAACATGTAATACCTCGCCGCTAACATTAC
ATACGTCTTTTTGGTACGACGGATATTCAAAACTCCGACGATTCTAAGGC
TTCATATTATCGCGGCGTTGCCCCAATTATTACTCCCCTGTCTCAAGAAA
ACAGCACTTTTTGGTAATAACCAGGGGTTTTAAATGAACCAGGGGAGTAG
TTGTAGAAATTATTCAAACCTAAATGAATGTTCAGCGGGGTCGAAAGTGT
ACAAACGGGGCTCTTTATTATGCACCTATGAGATTGCGAAGATTGTGTGC
CGTTCTGTTTGAAGTTTGAAAGTTATGAATTTTATATTGGGTAAGTTGAC
AGAATGCCAAGCCCATTGGGACATTTTTCAACATCAGcttttttcaaagc
ttttttattttcttcaaaaattcaaaGAGTGCAACAACGAGGCCCAAAAT
TTATACTTAATTAAATTAATAcgtaaaaaaataattgtttCGTTATAAAT
ATTTCCGAAAAAAtgtatttgatttttaaacGATTTAGactttaatattt
tgaaaatgtcattaatgtaaaatataatttagtttttttgtcatgtttgt
actattcttttttttcttctcagtCAGGCTAGTGTAATTTTGcgcattga
gtttgaagccccgaaggggctagagaggaatcttcaacctttctaaAATT
AAGTCTTAAGATTTGCCCCGCATTAGGaatttgtgtgaaaaccacacAGG
TCACGTGTTTAGGATAGGGTGTAAGTGGTTTCacttcccatccaggagtt
tcggctttaaaatcaatgattttgCGTCTTTGTGGCTTGCCTGGATCAAG
GGAAcagtaaatttttgaaaacttgccACAATTGCAGTTAAAGCTCGTTT
TCCTTGACATGATGTATCCATATTATGATTAGCTAACAACTAAGATGCTC
CCTATCACAGTTTTAATCTTATACTTAGTTCGGAACGGAATAATCAGCCC
TTCCTTGGTTTTCCAGGGAGAAATACTGCCACCCCCCTTCCTCTGATACT
ATGGGAAGCTTCTTTACTCTGTTGCCAAGTTTCAATGACATAGAGTTTCT
TCTGTCAACTTACTAACCTAGAAATATAGTGTTATTTGTATACGACAGAA
TATTATCATTACTACTACTCATGTAACGTGTATatacaaattttgatttt
tttttggatgaaGATATTTCTCATTGTTCTAAATAT Run BLAST on NCBI transcript from alignment at sc0000044:190723..193561+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004358 ID=TCONS_00004358|Name=TCONS_00004358|organism=Clytia hemisphaerica|type=transcript|length=2839bp|location=Sequence derived from alignment at sc0000044:190723..193561+ (Clytia hemisphaerica)
TTNCCGTCAGCGGAGATGAAAAATTCCTCCATTCAGGTAACCTTATGTGT
TTTGGATTactcttttttacttttatttgactttttctccCAAAAAACGC
CCACCGCCCTCGGGTGCTAGAAATCGTCTGCCCAAATAGTTTTAGAAAAT
TCGCTGATTCGTCGACCAAAGTTTACTATTTCTTATTTAAAACTTGTGTT
GAATAATTTTTACCCGTTTAGTTTAATAGACATGAGATTCCTACCCCTGG
TCATCATGTCAATGAGAAAAAGTCTTTCTTGCTTTAAATTTAATTAGGCT
TTCAAAAATCATctcatgcttataaaaaagtttaatttcattcTAACAGG
TTCACCATGTAACAATTATGCTGGCTACTGTGATTTCCTCAACAAGTGTC
GTAAAGTCGACGCAGAAGGGCCACTATCACGTCTCAAGGACTTGTTCTTT
AGTTCTGAATCCATCGATAACATTTTGGATTGGATGAAATCGTACTGGTG
GGCTTGCGTTCTCATTGGATTGGGATTAATCCTATTCATGGCTGGTAtgt
catttttctgttttttttttgttcactttatAAAGAGGCTGATTTTGACA
ACAATTGAGATAGAGAATAGTTTGGgtataaacgttttttttctttttgt
tggtGAAGGTTTCCTtcaaaaaaatcctaaaagagAATTAAGAATTCGTT
GAATAACTATTTACATAGGTTACGCCTTTACCTaacgattttttagaaaa
atagttCTCTTGAAATGAAATAGATCAGACGACATAATTTTGTATTATTT
GTTGTTATCCCAGGTTATCCAAGTAAAAACTTTCTGTTGTAATCCAAGTA
AAAactttaagaatatttcttttctGCTTTTCAGCATTCATTGCATGTTG
CAGCGTTCACACACCCAGCAGCAACCCCAACAAACCACCACCCCGCCACC
TCAGTATACCACGAACCATCTCAAGACGTAACCGCCAACCGCCTTCCGCC
CCACCATCAACCAGCGGGTACAACCGCCAAGAACAACCGGAAGGGCCACC
AGGGTATGATACCGCTTTGCGGGAAGGTCATGGTTACGAAATGCGCTGAT
GTGTATAGAAGATCATGTGCTAGAAACGAAAAAAAAGAtcttatttagat
ttttcacaATCTATTCTTTAcataatataaaaatgaaaaatcttttcgaG
TTTAGTCCATCTTCAAGGTTTTCCTGCCAAAGGAAGGAGGTGGGTTATGC
TTCTGCTTAGCAAGTGGCAGGGAAGTAGTTTTAGTGACCGTAGTTAAATC
AAGTCTGTGTATAAAATGCCAATATGAAAGTAACCATTTTTTGTGCACGA
CATTAATGATACAGTGACTATAAACACCTACACTTCTCTTTCATATTCTA
CATAACTATGGGAAATTAcgaaaaagaatatatttctcTTTCCAAATTAT
TATATGCTGTTTATTCTAAAGTTATGAttgattttgtcattttttttatg
tggcaacaatttttttaagttatttgattttatttatgAGGATATTATTG
ATGTAGTAAGCCTTTTTCCTTTATTCTTAAGTTGTTTTGCCTATCGAGAA
AAGTAATTAGGTCCTTATTAGGCCAACATGTAATACCTCGCCGCTAACAT
TACATACGTCTTTTTGGTACGACGGATATTCAAAACTCCGACGATTCTAA
GGCTTCATATTATCGCGGCGTTGCCCCAATTATTACTCCCCTGTCTCAAG
AAAACAGCACTTTTTGGTAATAACCAGGGGTTTTAAATGAACCAGGGGAG
TAGTTGTAGAAATTATTCAAACCTAAATGAATGTTCAGCGGGGTCGAAAG
TGTACAAACGGGGCTCTTTATTATGCACCTATGAGATTGCGAAGATTGTG
TGCCGTTCTGTTTGAAGTTTGAAAGTTATGAATTTTATATTGGGTAAGTT
GACAGAATGCCAAGCCCATTGGGACATTTTTCAACATCAGcttttttcaa
agcttttttattttcttcaaaaattcaaaGAGTGCAACAACGAGGCCCAA
AATTTATACTTAATTAAATTAATAcgtaaaaaaataattgtttCGTTATA
AATATTTCCGAAAAAAtgtatttgatttttaaacGATTTAGactttaata
ttttgaaaatgtcattaatgtaaaatataatttagtttttttgtcatgtt
tgtactattcttttttttcttctcagtCAGGCTAGTGTAATTTTGcgcat
tgagtttgaagccccgaaggggctagagaggaatcttcaacctttctaaA
ATTAAGTCTTAAGATTTGCCCCGCATTAGGaatttgtgtgaaaaccacac
AGGTCACGTGTTTAGGATAGGGTGTAAGTGGTTTCacttcccatccagga
gtttcggctttaaaatcaatgattttgCGTCTTTGTGGCTTGCCTGGATC
AAGGGAAcagtaaatttttgaaaacttgccACAATTGCAGTTAAAGCTCG
TTTTCCTTGACATGATGTATCCATATTATGATTAGCTAACAACTAAGATG
CTCCCTATCACAGTTTTAATCTTATACTTAGTTCGGAACGGAATAATCAG
CCCTTCCTTGGTTTTCCAGGGAGAAATACTGCCACCCCCCTTCCTCTGAT
ACTATGGGAAGCTTCTTTACTCTGTTGCCAAGTTTCAATGACATAGAGTT
TCTTCTGTCAACTTACTAACCTAGAAATATAGTGTTATTTGTATACGACA
GAATATTATCATTACTACTACTCATGTAACGTGTATatacaaattttgat
ttttttttggatgaaGATATTTCTCATTGTTCTAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004358-exon-sc0000044-1491911889:190723..190758 | TCONS_00004358-exon-sc0000044-1491911889:190723..190758 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1510915933:190723..190758 | TCONS_00004358-exon-sc0000044-1510915933:190723..190758 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1575043694:190723..190758 | TCONS_00004358-exon-sc0000044-1575043694:190723..190758 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1491911889:191072..191266 | TCONS_00004358-exon-sc0000044-1491911889:191072..191266 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1510915933:191072..191266 | TCONS_00004358-exon-sc0000044-1510915933:191072..191266 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1575043694:191072..191266 | TCONS_00004358-exon-sc0000044-1575043694:191072..191266 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1491911889:191607..193561 | TCONS_00004358-exon-sc0000044-1491911889:191607..193561 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1510915933:191607..193561 | TCONS_00004358-exon-sc0000044-1510915933:191607..193561 | Clytia hemisphaerica | exon |
| TCONS_00004358-exon-sc0000044-1575043694:191607..193561 | TCONS_00004358-exon-sc0000044-1575043694:191607..193561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:190723..193561 + |
Blast
BLAST of TCONS_00004358 vs. Swiss-Prot (Human)
Match: ADA10 (Disintegrin and metalloproteinase domain-containing protein 10 OS=Homo sapiens GN=ADAM10 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.889e-25 Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 3
Query: 9 SGDEKFLHSGSPCNNYAGYCDFLNKCRKVDAEGPLSRLKDLFFSSESIDNILDWMKSYWWACVLIGLGLILFMAAFIACCSVHTPSSN 272
SG L GSPCN++ GYCD +CR VDA+GPL+RLK FS E +NI +W+ ++WWA +L+G+ LI+ MA FI CSVHTPSSN
Sbjct: 620 SGRTITLQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPELYENIAEWIVAHWWAVLLMGIALIMLMAGFIKICSVHTPSSN 707
The following BLAST results are available for this feature:
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