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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004346 ID=TCONS_00004346|Name=TCONS_00004346|organism=Clytia hemisphaerica|type=transcript|length=3683bp
AACTTAATTTCGCATCATTAACATTATAGAAAGcaagaaaattaaacaaa
aggTACAGCATTATGGAAACTAATGGCCAGATGGATGAAAACACAATCGG
TAATATCGAGATCATCCTCAAATCAATTGTAATTTCCATTTTTATCTTAT
CCGGTATTATTGGAAACAGTTCCGTTATCCATGCTATACGGACATACCCG
AAACTACGGACAGTaccaaattattttgttttcaatctaGCAGTTGCAGA
TTTATTATTTTCGTTAACTGGAATGGTTATGATTTTAATAACAACGGTTT
CTAAAGGATGGGTACTTGGTGTCAAAATGTGTAATTTTGGTGGTTTGCTC
AATTCTGTTTTTTGCACAACTTCAATTTGGACCTTAGTGATGATAAGTTT
GCATAGATATTTTGCTGTATCGAAACCAATGCTTGTGAAAAGAGTTTATA
CTAAAAAACGAACTTTATTGATGATTGTTTGTATATGGATCTTTGCATTT
TTAATTTCCGTCCCACCTTTATTTGGGTGGAGCCAGTTTGTGGAAGGGAC
TAATTTTTGCACCGTCGATGGACGTAAAAACATGTCTTATTCCATTTTTC
TACTAATGACGGATTACTTTTTCCCGTTTCTATTTTTATCGGGATTATAT
CTACGAATTTTTTTCGTACTCAAGAAACACGAGAACACTATGAAAAGACA
TAAATCGGTGAAACCAATACCCGATTTAGCTGAAGTAGAATCCGAAATCA
TGACGGCTGATGAAGCgccaaaatcaccaaatttattttcaagtcCCAGC
GAGATACGTGCTGCAGATACTAAAAGGTATTTTGAAGCTTTACAAAACAA
AGCACAAACTGACGGGGTTGTAACAAACCTGAATTCACCGGTGCGCGAAT
CAACTGAAACGTTAGTGATCCGACAAAATGAAGAGAATAACAACAAAATT
CAAAGAAACGGGAAACGTCATATCTCATTCTGCGATGACTCTAAtcagaa
aatcgggaaatcggattcgACGAAGAATCCAAACGGAATCATAAAAGCAA
CGTTAAAACGAACCAAAACAGGATCAAAacggaaaaagtttttcaaagaa
gTCAAAGTGACAAAAATGTTATTAATTGTTGTCTGCGGTTTCTTTCTATG
TTGGACACCCTTTTTAGTGGCTGGAGTTTTATATGCTTTCAATGCCGTAC
CATCAGACTTAAAATTACTCACAATAGGCATATACTTTGCCTGTTTAAAC
AGTTGTCTAAATCCGTTTATTTATGGAGTAATGAACACTAATTTCCGTTA
CGCTTTCCAGACGATGGCAAGAAACTTTTTAGCAGCCGTTCGCGCATGCG
TGAATAAAGACAAAATTACTATTAGTAAGAAGGATGGCGTATgtaggatt
taaaaattttagaaattttacaCCACTGTATCCGATTATCGGGTAAATAG
GGTAAATATTACAATTCAGCTAGCACNGGCGTGTGTAGGATTTGAACATT
TTAGAAATTTCACACCCCTGTATCCCTGTATCGAGCAGGGTAAATATTTG
TAATGTAATGCGGGTGTTTATATCTTGACGTTTGGTTCCAATAGGAATGC
Tttttacccagctggcacacaacattgtttcaacgtttatctaacgttca
caacgtccatttaacgttagatgaacattgaaacaacgttgtgtgccagc
tgggtagggTCCCGGATACAGTAGATCTTCTTTAagtcgaacctctataa
ctcgaatgtctccttaacttgaacaagtATTCTTCGTTCCTTTACTTAAC
AATGCTTTATAAAccaaatttccttaactcgaacaaatttttattCCCCG
TGCGTTTTCGAGTTATGTAAGGAGGACTTACATTTTTCAATGCATCGTAC
AGAAATATGATCATTTATGCGACTTTTTCATGTCTAAAATATGCCATACT
CATGTCATTCAGACCACCCTAAAACAGTTTTTCGTAGAAAGCTCTTCTGT
AGGTCAAATCTAATATTTACTTTCTTACAAGTTTCAAATTGCGGTAACAT
TTGATTGACTTTAACGTATAAATTCCTTGATTTTTTATCATGACAAATTT
CAGAACTGAAAAATCTCAGAATTGGCGTTCTGATAATAGAAAAAAGTTAA
CCCAGGGTTAAGAATTGCGTCCAATATGGAAACTGCTAAAATGATTAATA
ATTGCAGAGGGCTTTAGATTCTTAATGCAAATTCATAACCTCGATTATTT
AAGTTATTAGGATTATCGACTGACTGTAACCATCAAAATATAGTTCACTC
TCTAATCAGTAGGTTTTTCAAAAGGAAGACACCAGACCCTTTCTCATTTA
CCAAACTAGTACCCAGTACCCTTTAGCACTCACGAACTTACCACGTCCAT
AAGTAAAAATTCCAAGACCGACACAAGTTGTTATGGGTACGAGATATGTG
TCACCTACTTGGAGAGTGGACTGTAGAATGGTACTTTAATATTATTTTCT
TGGATTTCAAATGTACATATTAATCACCACTAACGAAATTTACACTGTAT
ATAGCTAGTAGGCGTATGACGGAAATAATTATAACCATATTACTTAAAAC
TTAACATCATGTACTAGGAGGATGTATGTATGACCAAAAGTATTGTAAAT
AGTGATTAGACAGTTTCAATATTCCACACGCGACCAAAAgcatagactat
gctatagtctaagggcaaatcattatctaagaaataagcccaaagccgaa
gaaaattcgcaacgGGTCTTTTGCCGAAAGGAGTTTAcagccggtagagt
ttgccagtcgtttcttcgaaactttcccgccaattttttttccgtatact
gccataacgccataccaacatattttcccgcctttactatcactgtaacg
gacgataacatcgtctaccaAAAGCATTCCAATATATGATATTCCGATAG
CGtatattggcggccgcccataTGCCAATATCCTTTCAGGAGAGAAAATG
AGTTAATCTTTTGATGTACCAATAATCTGCAATCGgcgtcgaaatatatt
ggcacttttgcgtattttaacttttttttcagaaattaaagatcgggcga
gaattgcagtttcagtacttccactttgtttcatttgatttttcgattgt
gaggggttaagtggcttccaggctatattctcagccttattggaacattt
ttgagcttttagatcctgagatcctaaggtcctaagacttaagtttcatg
ttaaaactcagagttaaaactctactttccaaccgtactttaaagcactg
AATAATCACTTGCAGTTTTCaaatttgagggaattccccttttgtgccaa
atattacgGTGGGGATTGTGACCTAGAAGTTTTTGGGACCCAACTATCCC
CAAAAGAGGGCTGAGCACCATATCTCCTGACTACTAAATTCGTAGCGCGT
TCAATCGGAATAGCTTTAGTGTATTGAAATAAATCTCTACATCACAGGTG
CCAGATAGAAAGGATGAAAGAATTTTGAGCAAAAGTTGTGGAATATTGAA
ACTAGATATTAACGATAGTCGTACCGAATTTTGAAGTACGCATATTGAAT
ATATTACTTGACATAGTGAGCTGGCCtcaatatttctatttttattcagt
atataTAAAAGCTCGAAATATAATAAACTTCAG Run BLAST on NCBI protein sequence of TCONS_00004346-protein >TCONS_00004346-protein ID=TCONS_00004346-protein|Name=TCONS_00004346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
METNGQMDENTIGNIEIILKSIVISIFILSGIIGNSSVIHAIRTYPKLRT
VPNYFVFNLAVADLLFSLTGMVMILITTVSKGWVLGVKMCNFGGLLNSVF
CTTSIWTLVMISLHRYFAVSKPMLVKRVYTKKRTLLMIVCIWIFAFLISV
PPLFGWSQFVEGTNFCTVDGRKNMSYSIFLLMTDYFFPFLFLSGLYLRIF
FVLKKHENTMKRHKSVKPIPDLAEVESEIMTADEAPKSPNLFSSPSEIRA
ADTKRYFEALQNKAQTDGVVTNLNSPVRESTETLVIRQNEENNNKIQRNG
KRHISFCDDSNQKIGKSDSTKNPNGIIKATLKRTKTGSKRKKFFKEVKVT
KMLLIVVCGFFLCWTPFLVAGVLYAFNAVPSDLKLLTIGIYFACLNSCLN
PFIYGVMNTNFRYAFQTMARNFLAAVRACVNKDKITISKKDGVCRI Run BLAST on NCBI transcript from alignment at sc0000041:622942..626624 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004346 ID=TCONS_00004346|Name=TCONS_00004346|organism=Clytia hemisphaerica|type=transcript|length=3683bp|location=Sequence derived from alignment at sc0000041:622942..626624 (Clytia hemisphaerica)
CTGAAGTTTATTATATTTCGAGCTTTTAtatatactgaataaaaatagaa
atattgaGGCCAGCTCACTATGTCAAGTAATATATTCAATATGCGTACTT
CAAAATTCGGTACGACTATCGTTAATATCTAGTTTCAATATTCCACAACT
TTTGCTCAAAATTCTTTCATCCTTTCTATCTGGCACCTGTGATGTAGAGA
TTTATTTCAATACACTAAAGCTATTCCGATTGAACGCGCTACGAATTTAG
TAGTCAGGAGATATGGTGCTCAGCCCTCTTTTGGGGATAGTTGGGTCCCA
AAAACTTCTAGGTCACAATCCCCACcgtaatatttggcacaaaaggggaa
ttccctcaaatttGAAAACTGCAAGTGATTATTcagtgctttaaagtacg
gttggaaagtagagttttaactctgagttttaacatgaaacttaagtctt
aggaccttaggatctcaggatctaaaagctcaaaaatgttccaataaggc
tgagaatatagcctggaagccacttaacccctcacaatcgaaaaatcaaa
tgaaacaaagtggaagtactgaaactgcaattctcgcccgatctttaatt
tctgaaaaaaaagttaaaatacgcaaaagtgccaatatatttcgacgcCG
ATTGCAGATTATTGGTACATCAAAAGATTAACTCATTTTCTCTCCTGAAA
GGATATTGGCAtatgggcggccgccaatataCGCTATCGGAATATCATAT
ATTGGAATGCTTTtggtagacgatgttatcgtccgttacagtgatagtaa
aggcgggaaaatatgttggtatggcgttatggcagtatacggaaaaaaaa
ttggcgggaaagtttcgaagaaacgactggcaaactctaccggctgTAAA
CTCCTTTCGGCAAAAGACCcgttgcgaattttcttcggctttgggcttat
ttcttagataatgatttgcccttagactatagcatagtctatgcTTTTGG
TCGCGTGTGGAATATTGAAACTGTCTAATCACTATTTACAATACTTTTGG
TCATACATACATCCTCCTAGTACATGATGTTAAGTTTTAAGTAATATGGT
TATAATTATTTCCGTCATACGCCTACTAGCTATATACAGTGTAAATTTCG
TTAGTGGTGATTAATATGTACATTTGAAATCCAAGAAAATAATATTAAAG
TACCATTCTACAGTCCACTCTCCAAGTAGGTGACACATATCTCGTACCCA
TAACAACTTGTGTCGGTCTTGGAATTTTTACTTATGGACGTGGTAAGTTC
GTGAGTGCTAAAGGGTACTGGGTACTAGTTTGGTAAATGAGAAAGGGTCT
GGTGTCTTCCTTTTGAAAAACCTACTGATTAGAGAGTGAACTATATTTTG
ATGGTTACAGTCAGTCGATAATCCTAATAACTTAAATAATCGAGGTTATG
AATTTGCATTAAGAATCTAAAGCCCTCTGCAATTATTAATCATTTTAGCA
GTTTCCATATTGGACGCAATTCTTAACCCTGGGTTAACTTTTTTCTATTA
TCAGAACGCCAATTCTGAGATTTTTCAGTTCTGAAATTTGTCATGATAAA
AAATCAAGGAATTTATACGTTAAAGTCAATCAAATGTTACCGCAATTTGA
AACTTGTAAGAAAGTAAATATTAGATTTGACCTACAGAAGAGCTTTCTAC
GAAAAACTGTTTTAGGGTGGTCTGAATGACATGAGTATGGCATATTTTAG
ACATGAAAAAGTCGCATAAATGATCATATTTCTGTACGATGCATTGAAAA
ATGTAAGTCCTCCTTACATAACTCGAAAACGCACGGGGaataaaaatttg
ttcgagttaaggaaatttggTTTATAAAGCATTGTTAAGTAAAGGAACGA
AGAATacttgttcaagttaaggagacattcgagttatagaggttcgactT
AAAGAAGATCTACTGTATCCGGGAccctacccagctggcacacaacgttg
tttcaatgttcatctaacgttaaatggacgttgtgaacgttagataaacg
ttgaaacaatgttgtgtgccagctgggtaaaaAGCATTCCTATTGGAACC
AAACGTCAAGATATAAACACCCGCATTACATTACAAATATTTACCCTGCT
CGATACAGGGATACAGGGGTGTGAAATTTCTAAAATGTTCAAATCCTACA
CACGCCNGTGCTAGCTGAATTGTAATATTTACCCTATTTACCCGATAATC
GGATACAGTGGtgtaaaatttctaaaatttttaaatcctacATACGCCAT
CCTTCTTACTAATAGTAATTTTGTCTTTATTCACGCATGCGCGAACGGCT
GCTAAAAAGTTTCTTGCCATCGTCTGGAAAGCGTAACGGAAATTAGTGTT
CATTACTCCATAAATAAACGGATTTAGACAACTGTTTAAACAGGCAAAGT
ATATGCCTATTGTGAGTAATTTTAAGTCTGATGGTACGGCATTGAAAGCA
TATAAAACTCCAGCCACTAAAAAGGGTGTCCAACATAGAAAGAAACCGCA
GACAACAATTAATAACATTTTTGTCACTTTGActtctttgaaaaactttt
tccgtTTTGATCCTGTTTTGGTTCGTTTTAACGTTGCTTTTATGATTCCG
TTTGGATTCTTCGTcgaatccgatttcccgattttctgaTTAGAGTCATC
GCAGAATGAGATATGACGTTTCCCGTTTCTTTGAATTTTGTTGTTATTCT
CTTCATTTTGTCGGATCACTAACGTTTCAGTTGATTCGCGCACCGGTGAA
TTCAGGTTTGTTACAACCCCGTCAGTTTGTGCTTTGTTTTGTAAAGCTTC
AAAATACCTTTTAGTATCTGCAGCACGTATCTCGCTGGgacttgaaaata
aatttggtgattttggcGCTTCATCAGCCGTCATGATTTCGGATTCTACT
TCAGCTAAATCGGGTATTGGTTTCACCGATTTATGTCTTTTCATAGTGTT
CTCGTGTTTCTTGAGTACGAAAAAAATTCGTAGATATAATCCCGATAAAA
ATAGAAACGGGAAAAAGTAATCCGTCATTAGTAGAAAAATGGAATAAGAC
ATGTTTTTACGTCCATCGACGGTGCAAAAATTAGTCCCTTCCACAAACTG
GCTCCACCCAAATAAAGGTGGGACGGAAATTAAAAATGCAAAGATCCATA
TACAAACAATCATCAATAAAGTTCGTTTTTTAGTATAAACTCTTTTCACA
AGCATTGGTTTCGATACAGCAAAATATCTATGCAAACTTATCATCACTAA
GGTCCAAATTGAAGTTGTGCAAAAAACAGAATTGAGCAAACCACCAAAAT
TACACATTTTGACACCAAGTACCCATCCTTTAGAAACCGTTGTTATTAAA
ATCATAACCATTCCAGTTAACGAAAATAATAAATCTGCAACTGCtagatt
gaaaacaaaataatttggtACTGTCCGTAGTTTCGGGTATGTCCGTATAG
CATGGATAACGGAACTGTTTCCAATAATACCGGATAAGATAAAAATGGAA
ATTACAATTGATTTGAGGATGATCTCGATATTACCGATTGTGTTTTCATC
CATCTGGCCATTAGTTTCCATAATGCTGTAccttttgtttaattttcttg
CTTTCTATAATGTTAATGATGCGAAATTAAGTT Coding sequence (CDS) from alignment at sc0000041:622942..626624 >TCONS_00004346 ID=TCONS_00004346|Name=TCONS_00004346|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at sc0000041:622942..626624 (Clytia hemisphaerica)
ttaaatcctacATACGCCATCCTTCTTACTAATAGTAATTTTGTCTTTAT
TCACGCATGCGCGAACGGCTGCTAAAAAGTTTCTTGCCATCGTCTGGAAA
GCGTAACGGAAATTAGTGTTCATTACTCCATAAATAAACGGATTTAGACA
ACTGTTTAAACAGGCAAAGTATATGCCTATTGTGAGTAATTTTAAGTCTG
ATGGTACGGCATTGAAAGCATATAAAACTCCAGCCACTAAAAAGGGTGTC
CAACATAGAAAGAAACCGCAGACAACAATTAATAACATTTTTGTCACTTT
GActtctttgaaaaactttttccgtTTTGATCCTGTTTTGGTTCGTTTTA
ACGTTGCTTTTATGATTCCGTTTGGATTCTTCGTcgaatccgatttcccg
attttctgaTTAGAGTCATCGCAGAATGAGATATGACGTTTCCCGTTTCT
TTGAATTTTGTTGTTATTCTCTTCATTTTGTCGGATCACTAACGTTTCAG
TTGATTCGCGCACCGGTGAATTCAGGTTTGTTACAACCCCGTCAGTTTGT
GCTTTGTTTTGTAAAGCTTCAAAATACCTTTTAGTATCTGCAGCACGTAT
CTCGCTGGgacttgaaaataaatttggtgattttggcGCTTCATCAGCCG
TCATGATTTCGGATTCTACTTCAGCTAAATCGGGTATTGGTTTCACCGAT
TTATGTCTTTTCATAGTGTTCTCGTGTTTCTTGAGTACGAAAAAAATTCG
TAGATATAATCCCGATAAAAATAGAAACGGGAAAAAGTAATCCGTCATTA
GTAGAAAAATGGAATAAGACATGTTTTTACGTCCATCGACGGTGCAAAAA
TTAGTCCCTTCCACAAACTGGCTCCACCCAAATAAAGGTGGGACGGAAAT
TAAAAATGCAAAGATCCATATACAAACAATCATCAATAAAGTTCGTTTTT
TAGTATAAACTCTTTTCACAAGCATTGGTTTCGATACAGCAAAATATCTA
TGCAAACTTATCATCACTAAGGTCCAAATTGAAGTTGTGCAAAAAACAGA
ATTGAGCAAACCACCAAAATTACACATTTTGACACCAAGTACCCATCCTT
TAGAAACCGTTGTTATTAAAATCATAACCATTCCAGTTAACGAAAATAAT
AAATCTGCAACTGCtagattgaaaacaaaataatttggtACTGTCCGTAG
TTTCGGGTATGTCCGTATAGCATGGATAACGGAACTGTTTCCAATAATAC
CGGATAAGATAAAAATGGAAATTACAATTGATTTGAGGATGATCTCGATA
TTACCGATTGTGTTTTCATCCATCTGGCCATTAGTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004346-exon-sc0000041-1491911889:622942..626624 | TCONS_00004346-exon-sc0000041-1491911889:622942..626624 | Clytia hemisphaerica | exon |
| TCONS_00004346-exon-sc0000041-1510915933:622942..626624 | TCONS_00004346-exon-sc0000041-1510915933:622942..626624 | Clytia hemisphaerica | exon |
| TCONS_00004346-exon-sc0000041-1575043694:622942..626624 | TCONS_00004346-exon-sc0000041-1575043694:622942..626624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:622942..626624 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004983 | neuropeptide Y receptor activity |
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004983 |
neuropeptide Y receptor activity |
Blast
BLAST of TCONS_00004346 vs. Swiss-Prot (Human)
Match: 5HT1A (5-hydroxytryptamine receptor 1A OS=Homo sapiens GN=HTR1A PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 2.405e-31 Identity = 103/390 (26.41%), Postives = 170/390 (43.59%), Query Frame = 3
Query: 174 VIHAIRTYPKLRTVPNYFVFNLAVADLLFSLTGMVMILITTVSKGWVLGVKMCNFGGLLNSVFCTTSIWTLVMISLHRYFAVSKPMLVKRVYTKKRTLLMIVCIWIFAFLISVPPLFGW--SQFVEGTNFCTVDGRKNMSYSIFLLMTDYFFPFLFLSGLYLRIFFVLKKHENTMKRHKSVKPIPDL-AEVESEIMTADEAPKSPNLFSSPSEIRAADTKRYFEALQNKAQTDGVVTNLNSPVRESTETLVIRQNEENNNKIQR--NGKRHISFCDDSNQKIGKSDSTKNPNGIIKATLKRTKTGSKRKKFFKEVKVTKMLLIVVCGFFLCWTPFLVAGVLYAFNAVPSDLKLLTIGI--YFACLNSCLNPFIYGVMNTNFRYAFQTMAR 1322
V+ AI L+ V NY + +LAV DL+ S+ + M + V W LG C+ L+ + CT+SI L I+L RY+A++ P+ T +R +I W+ FLIS+PP+ GW + + CT+ K+ Y+I+ ++ P L + LY RIF + + K+VK + A+ A + KS N S ++ + +++KA G N VR+ + + E + R N K H+ ++ S + N +R ++ +E K K L I++ F LCW PF + ++ F + L I + NS LNP IY N +F+ AF+ + +
Sbjct: 57 VVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLISIPPMLGWRTPEDRSDPDACTIS--KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAAR-----FRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESG--------SRNWRLGVESKA---GGALCANGAVRQGDDGAALEVIE-----VHRVGNSKEHLPLPSEAGPTPCAPASFERKN-------ERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK 416
The following BLAST results are available for this feature:
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