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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004344 ID=TCONS_00004344|Name=TCONS_00004344|organism=Clytia hemisphaerica|type=transcript|length=2330bp
CCAAATTGGGAGAATGATGTTAAATTATGAGACTGATATTCtaatcaaat
ttttgattatgtgaatcaataaaaatttgcaaatatttattttattatta
ataTCAGTTCTAAAAATTCGTTGGGTAGTCAtaaagtttttagtttttaa
taGCGAGATCCTACcaaatttctaagaaaaaaaataaacaaaaaaaaaat
ataattactCTGAAACAATACTAAAAAACATTTGATttgcaaaaagtaaa
aataattattaaaagtGTTGTAGATCTAAGACTTGAATTTCCTTGATCTC
ATTAAATTATCTTAATATGATGGCTTGTTTTTGTTAAATAAAAGTCACTT
TAACAAATACTGTACCAAGATCAAATTGGACAGGCTGTAAAAAGAAGTTG
ACCACGAGGCTGAActttaataattttaaaaacatgtttGTTTGCCATCA
GCAGGTGGGTTACCCggtcagaaaaaatattttattttttgacgatTTAT
TAAAGTTCTCTTTACATTTggtttaattttaaaaagaaaagggAAGAGGT
AGAGGGGAATTCAGGATTCTTAAGCTTAAGATAGACCAAGagtttttgac
ttgaaaaaaaattctgctttAAAGTGACAATAACAATTTTTGGGTCGGCT
GATTTCAAGGTAGGGTCGGTCAGGTGAGGGCAGAACAACATTTCTTTTGC
TGAAGCCAAAATAAAGGGAATGAACTAAAAAGAAGCTTTTAACATTTGAT
TTACCTTACGTAGGCTTTGATTGAGGAAACTAGAAACTAAAAATATGATA
ATTTTTATAGGACGTTTTGCataattttgtaataaaaacatttatatttt
aaaatgtaaataaataaaatttttctatGAATTTTATGCACTGGAAGTAA
ATAATACTTTGATGCATAAAAAAGTGAGGTATATAATGAgtggaaacaat
tttacaaaaaactGTGCAAAATTTTACATCTTAAAATCAGACCATACCGG
AAGAAAAAGGCATTTATGCTATAGCATTTACTGTTAGTAATTCAAGGCTC
GAAAcaacgatttcaagtgggttggacaaaatgtccgatcagggttgctt
tagcttgaaaattatgattttggggtcggacatgaagctatttgggtcgg
acaatgtccgatgtccgaccgttttTTCGAGCCCTGGTAATTTAAACGAA
AAAGCAAATCTACATCATCAATCAATGAccactttttcaaatatttttta
gttttaaaacaaCCTATCAGAGGTTTTCGAAATCACCAAAACTACAATGC
TGCGTTCAAAAGGgtaaaaaaactacaaaaaagaATGTAGGATGAACAAG
GAATCAAAGTGTTATTAAAATAAATCCTTATATCATTTTATTACTTCAGT
ATTATTGCATTGATGAGTTCCAGCTCGGTATtatatgaatttgaaaaata
acttaTTCATCAAGTTTTGAACGGAACTTTCAAACGTGATCCAGCACACT
TTTAAACTCAGCCATACTAAAATCTTCTACCATGtaccaaaaataaaaca
acagaACAACCAGCACTAAAATTCAATTGAAAGCTGTAGGGTTTTCTAAT
CGAGCCAAAATATCTGCATGCAtttgtaaatctttttcaatttgtGTTGA
TTCTAGAGTATTCTCTTGATATCCTGGTTTAATTTCACCAATACTTGTCA
AAAGTTTCAACGTCTTTGGCGCCATAAAGTTAATATTTGCATTCATTTGA
GGTGGAGTCTCATTTGCTTGTTTACAATCAATTTTATTCAAGTCTTCAAA
ACTATCATCGTTTTTATGATTCCGTGATTTCCTACTTCCTTGCTTTGTTT
TTCTGCTACCTTTAGTcctttgtttatgttttggaGTCTTTTTGTCATCA
CTGTTTTCAGTTGGTGAGCCGCAACATCCATTAAACATACCAACAATTAC
CAGAGAagacaaatcaaaatttaattatTCAAGGTTGTGCTTGTATAGAT
GATAGGTTTTAACTGTGTTTGACTTTGCCATCAACTTACATGCTTCATAT
CATTTATATCaattcattattttgttgtatttttgtCTAAATTTATAAGT
AACATGGAAACATGGAAGTGCATTCCCAGAAATTCCAGTAGGCTAAAAAC
TTTCATCATATTGGGCAATACCCCTTTTTTTCACTCTCGTCTTTAAAAAG
GTTACCCCCTACAAAGAGCTATCTCCAACTGAAATCTCTTATCAGTCAAC
CTCCACCTTATTCTAGTTAAATTTGAGGAATACAAACACCTACAACCACT
AACCCTATTTTTTTGTACTAATGGCTTTAT Run BLAST on NCBI protein sequence of TCONS_00004344-protein >TCONS_00004344-protein ID=TCONS_00004344-protein|Name=TCONS_00004344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MFNGCCGSPTENSDDKKTPKHKQRTKGSRKTKQGSRKSRNHKNDDSFEDL
NKIDCKQANETPPQMNANINFMAPKTLKLLTSIGEIKPGYQENTLESTQI
EKDLQMHADILARLENPTAFN Run BLAST on NCBI transcript from alignment at sc0000041:592532..594861 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004344 ID=TCONS_00004344|Name=TCONS_00004344|organism=Clytia hemisphaerica|type=transcript|length=2330bp|location=Sequence derived from alignment at sc0000041:592532..594861 (Clytia hemisphaerica)
ATAAAGCCATTAGTACAAAAAAATAGGGTTAGTGGTTGTAGGTGTTTGTA
TTCCTCAAATTTAACTAGAATAAGGTGGAGGTTGACTGATAAGAGATTTC
AGTTGGAGATAGCTCTTTGTAGGGGGTAACCTTTTTAAAGACGAGAGTGA
AAAAAAGGGGTATTGCCCAATATGATGAAAGTTTTTAGCCTACTGGAATT
TCTGGGAATGCACTTCCATGTTTCCATGTTACTTATAAATTTAGacaaaa
atacaacaaaataatgaattGATATAAATGATATGAAGCATGTAAGTTGA
TGGCAAAGTCAAACACAGTTAAAACCTATCATCTATACAAGCACAACCTT
GAataattaaattttgatttgtctTCTCTGGTAATTGTTGGTATGTTTAA
TGGATGTTGCGGCTCACCAACTGAAAACAGTGATGACAAAAAGACtccaa
aacataaacaaaggACTAAAGGTAGCAGAAAAACAAAGCAAGGAAGTAGG
AAATCACGGAATCATAAAAACGATGATAGTTTTGAAGACTTGAATAAAAT
TGATTGTAAACAAGCAAATGAGACTCCACCTCAAATGAATGCAAATATTA
ACTTTATGGCGCCAAAGACGTTGAAACTTTTGACAAGTATTGGTGAAATT
AAACCAGGATATCAAGAGAATACTCTAGAATCAACacaaattgaaaaaga
tttacaaaTGCATGCAGATATTTTGGCTCGATTAGAAAACCCTACAGCTT
TCAATTGAATTTTAGTGCTGGTTGTtctgttgttttatttttggtaCATG
GTAGAAGATTTTAGTATGGCTGAGTTTAAAAGTGTGCTGGATCACGTTTG
AAAGTTCCGTTCAAAACTTGATGAAtaagttatttttcaaattcatataA
TACCGAGCTGGAACTCATCAATGCAATAATACTGAAGTAATAAAATGATA
TAAGGATTTATTTTAATAACACTTTGATTCCTTGTTCATCCTACATtctt
ttttgtagtttttttacCCTTTTGAACGCAGCATTGTAGTTTTGGTGATT
TCGAAAACCTCTGATAGGttgttttaaaactaaaaaatatttgaaaaagt
ggTCATTGATTGATGATGTAGATTTGCTTTTTCGTTTAAATTACCAGGGC
TCGAAaaaacggtcggacatcggacattgtccgacccaaatagcttcatg
tccgaccccaaaatcataattttcaagctaaagcaaccctgatcggacat
tttgtccaacccacttgaaatcgttgTTTCGAGCCTTGAATTACTAACAG
TAAATGCTATAGCATAAATGCCTTTTTCTTCCGGTATGGTCTGATTTTAA
GATGTAAAATTTTGCACagttttttgtaaaattgtttccacTCATTATAT
ACCTCACTTTTTTATGCATCAAAGTATTATTTACTTCCAGTGCATAAAAT
TCatagaaaaattttatttatttacattttaaaatataaatgtttttatt
acaaaattatGCAAAACGTCCTATAAAAATTATCATATTTTTAGTTTCTA
GTTTCCTCAATCAAAGCCTACGTAAGGTAAATCAAATGTTAAAAGCTTCT
TTTTAGTTCATTCCCTTTATTTTGGCTTCAGCAAAAGAAATGTTGTTCTG
CCCTCACCTGACCGACCCTACCTTGAAATCAGCCGACCCAAAAATTGTTA
TTGTCACTTTaaagcagaattttttttcaagtcaaaaactCTTGGTCTAT
CTTAAGCTTAAGAATCCTGAATTCCCCTCTACCTCTTcccttttcttttt
aaaattaaaccAAATGTAAAGAGAACTTTAATAAatcgtcaaaaaataaa
atattttttctgaccGGGTAACCCACCTGCTGATGGCAAACaaacatgtt
tttaaaattattaaagTTCAGCCTCGTGGTCAACTTCTTTTTACAGCCTG
TCCAATTTGATCTTGGTACAGTATTTGTTAAAGTGACTTTTATTTAACAA
AAACAAGCCATCATATTAAGATAATTTAATGAGATCAAGGAAATTCAAGT
CTTAGATCTACAACacttttaataattatttttactttttgcaaATCAAA
TGTTTTTTAGTATTGTTTCAGagtaattatattttttttttgtttatttt
ttttcttagaaatttgGTAGGATCTCGCtattaaaaactaaaaactttaT
GACTACCCAACGAATTTTTAGAACTGAtattaataataaaataaatattt
gcaaatttttattgattcacataatcaaaaatttgattaGAATATCAGTC
TCATAATTTAACATCATTCTCCCAATTTGG Coding sequence (CDS) from alignment at sc0000041:592532..594861 >TCONS_00004344 ID=TCONS_00004344|Name=TCONS_00004344|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000041:592532..594861 (Clytia hemisphaerica)
ATGTTTAATGGATGTTGCGGCTCACCAACTGAAAACAGTGATGACAAAAA
GACtccaaaacataaacaaaggACTAAAGGTAGCAGAAAAACAAAGCAAG
GAAGTAGGAAATCACGGAATCATAAAAACGATGATAGTTTTGAAGACTTG
AATAAAATTGATTGTAAACAAGCAAATGAGACTCCACCTCAAATGAATGC
AAATATTAACTTTATGGCGCCAAAGACGTTGAAACTTTTGACAAGTATTG
GTGAAATTAAACCAGGATATCAAGAGAATACTCTAGAATCAACacaaatt
gaaaaagatttacaaaTGCATGCAGATATTTTGGCTCGATTAGAAAACCC
TACAGCTTTCAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004344-exon-sc0000041-1491911889:592532..594861 | TCONS_00004344-exon-sc0000041-1491911889:592532..594861 | Clytia hemisphaerica | exon |
| TCONS_00004344-exon-sc0000041-1510915933:592532..594861 | TCONS_00004344-exon-sc0000041-1510915933:592532..594861 | Clytia hemisphaerica | exon |
| TCONS_00004344-exon-sc0000041-1575043694:592532..594861 | TCONS_00004344-exon-sc0000041-1575043694:592532..594861 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:592532..594861 . |
Blast
The following BLAST results are available for this feature:
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