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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004337 ID=TCONS_00004337|Name=TCONS_00004337|organism=Clytia hemisphaerica|type=transcript|length=1883bp
AAGAGACTGTTATCAGCTATTAAACAGGTTATAGAAACCAgccaatcaga
aaaaaatagcaTAAAAGATGACAAAATGAATGACATTTTACGATCGACTC
TACCGTGAGAATGTCAAATAAAACGATCCCTCTTTTACCTACACCCATAG
ACAATGAGAACTCTTTCGATGCAAATCGTTTTTGGAAGTTGAAATAGGTA
GTTATAAAATGACACCTGTATTatgtattcttttaaaaatttcctctttt
ttttttaaagtttcttaAAAAAGGTTTCTGTGCATGATGGTTTAGTCAAA
TATAAATTGAAAGTTCAATAAATCCAAACAAATCTTAATAAGGACAATGA
AATAGCATTAAAAGACGTTTTACCCAAGTTCATCAAAATTATGTATATTG
AggaaaatttgtaatttttactAATAATTATAATATCTGCAAATAGAACC
CCTCTATTTGCGATAGGTTCATGCTATAGGCGTAGTATTTATATATTTGA
GAATATTAAGAAATATCAATAAGGAAAATtatatgatagctcaaaattaa
ttttcagtttttgggCTTTGGGTCGATCTCCCTCAAAGGGGAAAAAttag
tcggggaaaagtgatgaatttttttagcccaatgacaaaaattttcccag
CGAGAAACCTTTCTGGACAACTGAAAGGTAGTTACCCGTAGTTATGCCAA
AGATTTCCCCGACTTGaatttttcccgacgaaaaCTTTTACCCGACTAAA
TTTTCCCTTTATTAAGGGCAATAATAATTAAGATGTTCggcttaaaaaag
aacaaataaatTAACAAGCCTATCGTAATTAAGCGTCATTTTTTGATGGC
CAGAAACTTTTGCTCCATGTCTTGcggtttcaaattatgaccaATGGCGA
TAACTTTATTAACGTCCTCTCTGTGAGGTAATttgtatttatcaaaaata
tcgtATACTGCCTGTACTTGCTGTGAACTTTCAGGTTCACTCTCTAAACT
CACAACAGCTTTTAAGCGAAGGATTTTTTGCTGTGCACCAGTATTCAGTT
CATCATCTGACCATAGCAAGTCTTCTAAAACTCGATCGAGGTCATTTTCA
TTCATGACACCATCGAAATAAAAAGTACACGTAGTTACACGTAGTAGTTA
GCTCAGTCAATTCTAAAACACGTTCGAAATTCACTTTACCTGTGTCGTAA
GCATGCAAATCTAAAATCTCATTCAAGTCTACCTTCCCATACGAGGTTTT
GTGTATTTTAGCTGTGGCGTTTATCCCTTTGACACGCTTCAAACTATCCT
CAATCACATGTCAATACAGCAATACGATGTTGATAGAACTCTTTCATACT
TACCCTGTCTCTTCGAGGACGATTTAGTATTTGATTATCAAGATTGTATG
CCATCTGGGTATTCCATCCTAGATCAGCGTGAGGGAACAACAACGGATAG
GTTAATGGATCATTGAGTTGTGATGTATAATCAATTTTTCTCAATGGTTG
GTCCCTGGGATAAACAACAACATCTCTGGTGGTTGGGGGAGCACCATCAT
TGCCAACAAAAACAGCAGCAACTTCATTGTTGACTGGTGCATTTCCACGC
CTGTTATCATTACCAGAGCGCATGATCATCCTCATTTCAGATGTCGGACG
ATTCTCCTCAGCAGCACGGATCTGTTCTCTTTCTTCAACTTCTTTCATAT
TCATATATTGTCTTACCCAAGGGGAAACTTGGTGTAAAACAGTTTGTATG
GTAGCCATAGTATTGCGATTACAATCGGCAGCAGAAGGATTTGCCATTCT
GTTGTTCAATGCTTGTGCTGCCTCAATGAGATAAATTTGACTGAACGACG
CTTGGGTATTGTCATCAGGAAATAATGCACCAT Run BLAST on NCBI protein sequence of TCONS_00004337-protein >TCONS_00004337-protein ID=TCONS_00004337-protein|Name=TCONS_00004337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
GALFPDDNTQASFSQIYLIEAAQALNNRMANPSAADCNRNTMATIQTVLH
QVSPWVRQYMNMKEVEEREQIRAAEENRPTSEMRMIMRSGNDNRRGNAPV
NNEVAAVFVGNDGAPPTTRDVVVYPRDQPLRKIDYTSQLNDPLTYPLLFP
HADLGWNTQMAYNLDNQILNRPRRDRVSMKEFYQHRIAVLTCD Run BLAST on NCBI transcript from alignment at sc0000041:513018..514900 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004337 ID=TCONS_00004337|Name=TCONS_00004337|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at sc0000041:513018..514900 (Clytia hemisphaerica)
ATGGTGCATTATTTCCTGATGACAATACCCAAGCGTCGTTCAGTCAAATT
TATCTCATTGAGGCAGCACAAGCATTGAACAACAGAATGGCAAATCCTTC
TGCTGCCGATTGTAATCGCAATACTATGGCTACCATACAAACTGTTTTAC
ACCAAGTTTCCCCTTGGGTAAGACAATATATGAATATGAAAGAAGTTGAA
GAAAGAGAACAGATCCGTGCTGCTGAGGAGAATCGTCCGACATCTGAAAT
GAGGATGATCATGCGCTCTGGTAATGATAACAGGCGTGGAAATGCACCAG
TCAACAATGAAGTTGCTGCTGTTTTTGTTGGCAATGATGGTGCTCCCCCA
ACCACCAGAGATGTTGTTGTTTATCCCAGGGACCAACCATTGAGAAAAAT
TGATTATACATCACAACTCAATGATCCATTAACCTATCCGTTGTTGTTCC
CTCACGCTGATCTAGGATGGAATACCCAGATGGCATACAATCTTGATAAT
CAAATACTAAATCGTCCTCGAAGAGACAGGGTAAGTATGAAAGAGTTCTA
TCAACATCGTATTGCTGTATTGACATGTGATTGAGGATAGTTTGAAGCGT
GTCAAAGGGATAAACGCCACAGCTAAAATACACAAAACCTCGTATGGGAA
GGTAGACTTGAATGAGATTTTAGATTTGCATGCTTACGACACAGGTAAAG
TGAATTTCGAACGTGTTTTAGAATTGACTGAGCTAACTACTACGTGTAAC
TACGTGTACTTTTTATTTCGATGGTGTCATGAATGAAAATGACCTCGATC
GAGTTTTAGAAGACTTGCTATGGTCAGATGATGAACTGAATACTGGTGCA
CAGCAAAAAATCCTTCGCTTAAAAGCTGTTGTGAGTTTAGAGAGTGAACC
TGAAAGTTCACAGCAAGTACAGGCAGTATacgatatttttgataaataca
aATTACCTCACAGAGAGGACGTTAATAAAGTTATCGCCATtggtcataat
ttgaaaccgCAAGACATGGAGCAAAAGTTTCTGGCCATCAAAAAATGACG
CTTAATTACGATAGGCTTGTTAatttatttgttcttttttaagccGAACA
TCTTAATTATTATTGCCCTTAATAAAGGGAAAATTTAGTCGGGTAAAAGt
tttcgtcgggaaaaattCAAGTCGGGGAAATCTTTGGCATAACTACGGGT
AACTACCTTTCAGTTGTCCAGAAAGGTTTCTCGctgggaaaatttttgtc
attgggctaaaaaaattcatcacttttccccgactaaTTTTTCCCCTTTG
AGGGAGATCGACCCAAAGcccaaaaactgaaaattaattttgagctatca
tataATTTTCCTTATTGATATTTCTTAATATTCTCAAATATATAAATACT
ACGCCTATAGCATGAACCTATCGCAAATAGAGGGGTTCTATTTGCAGATA
TTATAATTATTagtaaaaattacaaattttccTCAATATACATAATTTTG
ATGAACTTGGGTAAAACGTCTTTTAATGCTATTTCATTGTCCTTATTAAG
ATTTGTTTGGATTTATTGAACTTTCAATTTATATTTGACTAAACCATCAT
GCACAGAAACCTTTTTtaagaaactttaaaaaaaaaagaggaaattttta
aaagaatacatAATACAGGTGTCATTTTATAACTACCTATTTCAACTTCC
AAAAACGATTTGCATCGAAAGAGTTCTCATTGTCTATGGGTGTAGGTAAA
AGAGGGATCGTTTTATTTGACATTCTCACGGTAGAGTCGATCGTAAAATG
TCATTCATTTTGTCATCTTTTAtgctatttttttctgattggcTGGTTTC
TATAACCTGTTTAATAGCTGATAACAGTCTCTT Coding sequence (CDS) from alignment at sc0000041:513018..514900 >TCONS_00004337 ID=TCONS_00004337|Name=TCONS_00004337|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000041:513018..514900 (Clytia hemisphaerica)
GGTGCATTATTTCCTGATGACAATACCCAAGCGTCGTTCAGTCAAATTTA
TCTCATTGAGGCAGCACAAGCATTGAACAACAGAATGGCAAATCCTTCTG
CTGCCGATTGTAATCGCAATACTATGGCTACCATACAAACTGTTTTACAC
CAAGTTTCCCCTTGGGTAAGACAATATATGAATATGAAAGAAGTTGAAGA
AAGAGAACAGATCCGTGCTGCTGAGGAGAATCGTCCGACATCTGAAATGA
GGATGATCATGCGCTCTGGTAATGATAACAGGCGTGGAAATGCACCAGTC
AACAATGAAGTTGCTGCTGTTTTTGTTGGCAATGATGGTGCTCCCCCAAC
CACCAGAGATGTTGTTGTTTATCCCAGGGACCAACCATTGAGAAAAATTG
ATTATACATCACAACTCAATGATCCATTAACCTATCCGTTGTTGTTCCCT
CACGCTGATCTAGGATGGAATACCCAGATGGCATACAATCTTGATAATCA
AATACTAAATCGTCCTCGAAGAGACAGGGTAAGTATGAAAGAGTTCTATC
AACATCGTATTGCTGTATTGACATGTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004337-exon-sc0000041-1491911889:513018..514900 | TCONS_00004337-exon-sc0000041-1491911889:513018..514900 | Clytia hemisphaerica | exon |
| TCONS_00004337-exon-sc0000041-1510915933:513018..514900 | TCONS_00004337-exon-sc0000041-1510915933:513018..514900 | Clytia hemisphaerica | exon |
| TCONS_00004337-exon-sc0000041-1575043694:513018..514900 | TCONS_00004337-exon-sc0000041-1575043694:513018..514900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:513018..514900 . |
Blast
The following BLAST results are available for this feature:
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