TCONS_00004337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004337
Unique NameTCONS_00004337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004337 ID=TCONS_00004337|Name=TCONS_00004337|organism=Clytia hemisphaerica|type=transcript|length=1883bp
AAGAGACTGTTATCAGCTATTAAACAGGTTATAGAAACCAgccaatcaga
aaaaaatagcaTAAAAGATGACAAAATGAATGACATTTTACGATCGACTC
TACCGTGAGAATGTCAAATAAAACGATCCCTCTTTTACCTACACCCATAG
ACAATGAGAACTCTTTCGATGCAAATCGTTTTTGGAAGTTGAAATAGGTA
GTTATAAAATGACACCTGTATTatgtattcttttaaaaatttcctctttt
ttttttaaagtttcttaAAAAAGGTTTCTGTGCATGATGGTTTAGTCAAA
TATAAATTGAAAGTTCAATAAATCCAAACAAATCTTAATAAGGACAATGA
AATAGCATTAAAAGACGTTTTACCCAAGTTCATCAAAATTATGTATATTG
AggaaaatttgtaatttttactAATAATTATAATATCTGCAAATAGAACC
CCTCTATTTGCGATAGGTTCATGCTATAGGCGTAGTATTTATATATTTGA
GAATATTAAGAAATATCAATAAGGAAAATtatatgatagctcaaaattaa
ttttcagtttttgggCTTTGGGTCGATCTCCCTCAAAGGGGAAAAAttag
tcggggaaaagtgatgaatttttttagcccaatgacaaaaattttcccag
CGAGAAACCTTTCTGGACAACTGAAAGGTAGTTACCCGTAGTTATGCCAA
AGATTTCCCCGACTTGaatttttcccgacgaaaaCTTTTACCCGACTAAA
TTTTCCCTTTATTAAGGGCAATAATAATTAAGATGTTCggcttaaaaaag
aacaaataaatTAACAAGCCTATCGTAATTAAGCGTCATTTTTTGATGGC
CAGAAACTTTTGCTCCATGTCTTGcggtttcaaattatgaccaATGGCGA
TAACTTTATTAACGTCCTCTCTGTGAGGTAATttgtatttatcaaaaata
tcgtATACTGCCTGTACTTGCTGTGAACTTTCAGGTTCACTCTCTAAACT
CACAACAGCTTTTAAGCGAAGGATTTTTTGCTGTGCACCAGTATTCAGTT
CATCATCTGACCATAGCAAGTCTTCTAAAACTCGATCGAGGTCATTTTCA
TTCATGACACCATCGAAATAAAAAGTACACGTAGTTACACGTAGTAGTTA
GCTCAGTCAATTCTAAAACACGTTCGAAATTCACTTTACCTGTGTCGTAA
GCATGCAAATCTAAAATCTCATTCAAGTCTACCTTCCCATACGAGGTTTT
GTGTATTTTAGCTGTGGCGTTTATCCCTTTGACACGCTTCAAACTATCCT
CAATCACATGTCAATACAGCAATACGATGTTGATAGAACTCTTTCATACT
TACCCTGTCTCTTCGAGGACGATTTAGTATTTGATTATCAAGATTGTATG
CCATCTGGGTATTCCATCCTAGATCAGCGTGAGGGAACAACAACGGATAG
GTTAATGGATCATTGAGTTGTGATGTATAATCAATTTTTCTCAATGGTTG
GTCCCTGGGATAAACAACAACATCTCTGGTGGTTGGGGGAGCACCATCAT
TGCCAACAAAAACAGCAGCAACTTCATTGTTGACTGGTGCATTTCCACGC
CTGTTATCATTACCAGAGCGCATGATCATCCTCATTTCAGATGTCGGACG
ATTCTCCTCAGCAGCACGGATCTGTTCTCTTTCTTCAACTTCTTTCATAT
TCATATATTGTCTTACCCAAGGGGAAACTTGGTGTAAAACAGTTTGTATG
GTAGCCATAGTATTGCGATTACAATCGGCAGCAGAAGGATTTGCCATTCT
GTTGTTCAATGCTTGTGCTGCCTCAATGAGATAAATTTGACTGAACGACG
CTTGGGTATTGTCATCAGGAAATAATGCACCAT
Run BLAST on NCBI

protein sequence of TCONS_00004337-protein

>TCONS_00004337-protein ID=TCONS_00004337-protein|Name=TCONS_00004337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
GALFPDDNTQASFSQIYLIEAAQALNNRMANPSAADCNRNTMATIQTVLH
QVSPWVRQYMNMKEVEEREQIRAAEENRPTSEMRMIMRSGNDNRRGNAPV
NNEVAAVFVGNDGAPPTTRDVVVYPRDQPLRKIDYTSQLNDPLTYPLLFP
HADLGWNTQMAYNLDNQILNRPRRDRVSMKEFYQHRIAVLTCD
Run BLAST on NCBI

transcript from alignment at sc0000041:513018..514900

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004337 ID=TCONS_00004337|Name=TCONS_00004337|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at sc0000041:513018..514900 (Clytia hemisphaerica)
ATGGTGCATTATTTCCTGATGACAATACCCAAGCGTCGTTCAGTCAAATT TATCTCATTGAGGCAGCACAAGCATTGAACAACAGAATGGCAAATCCTTC TGCTGCCGATTGTAATCGCAATACTATGGCTACCATACAAACTGTTTTAC ACCAAGTTTCCCCTTGGGTAAGACAATATATGAATATGAAAGAAGTTGAA GAAAGAGAACAGATCCGTGCTGCTGAGGAGAATCGTCCGACATCTGAAAT GAGGATGATCATGCGCTCTGGTAATGATAACAGGCGTGGAAATGCACCAG TCAACAATGAAGTTGCTGCTGTTTTTGTTGGCAATGATGGTGCTCCCCCA ACCACCAGAGATGTTGTTGTTTATCCCAGGGACCAACCATTGAGAAAAAT TGATTATACATCACAACTCAATGATCCATTAACCTATCCGTTGTTGTTCC CTCACGCTGATCTAGGATGGAATACCCAGATGGCATACAATCTTGATAAT CAAATACTAAATCGTCCTCGAAGAGACAGGGTAAGTATGAAAGAGTTCTA TCAACATCGTATTGCTGTATTGACATGTGATTGAGGATAGTTTGAAGCGT GTCAAAGGGATAAACGCCACAGCTAAAATACACAAAACCTCGTATGGGAA GGTAGACTTGAATGAGATTTTAGATTTGCATGCTTACGACACAGGTAAAG TGAATTTCGAACGTGTTTTAGAATTGACTGAGCTAACTACTACGTGTAAC TACGTGTACTTTTTATTTCGATGGTGTCATGAATGAAAATGACCTCGATC GAGTTTTAGAAGACTTGCTATGGTCAGATGATGAACTGAATACTGGTGCA CAGCAAAAAATCCTTCGCTTAAAAGCTGTTGTGAGTTTAGAGAGTGAACC TGAAAGTTCACAGCAAGTACAGGCAGTATacgatatttttgataaataca aATTACCTCACAGAGAGGACGTTAATAAAGTTATCGCCATtggtcataat ttgaaaccgCAAGACATGGAGCAAAAGTTTCTGGCCATCAAAAAATGACG CTTAATTACGATAGGCTTGTTAatttatttgttcttttttaagccGAACA TCTTAATTATTATTGCCCTTAATAAAGGGAAAATTTAGTCGGGTAAAAGt tttcgtcgggaaaaattCAAGTCGGGGAAATCTTTGGCATAACTACGGGT AACTACCTTTCAGTTGTCCAGAAAGGTTTCTCGctgggaaaatttttgtc attgggctaaaaaaattcatcacttttccccgactaaTTTTTCCCCTTTG AGGGAGATCGACCCAAAGcccaaaaactgaaaattaattttgagctatca tataATTTTCCTTATTGATATTTCTTAATATTCTCAAATATATAAATACT ACGCCTATAGCATGAACCTATCGCAAATAGAGGGGTTCTATTTGCAGATA TTATAATTATTagtaaaaattacaaattttccTCAATATACATAATTTTG ATGAACTTGGGTAAAACGTCTTTTAATGCTATTTCATTGTCCTTATTAAG ATTTGTTTGGATTTATTGAACTTTCAATTTATATTTGACTAAACCATCAT GCACAGAAACCTTTTTtaagaaactttaaaaaaaaaagaggaaattttta aaagaatacatAATACAGGTGTCATTTTATAACTACCTATTTCAACTTCC AAAAACGATTTGCATCGAAAGAGTTCTCATTGTCTATGGGTGTAGGTAAA AGAGGGATCGTTTTATTTGACATTCTCACGGTAGAGTCGATCGTAAAATG TCATTCATTTTGTCATCTTTTAtgctatttttttctgattggcTGGTTTC TATAACCTGTTTAATAGCTGATAACAGTCTCTT

Coding sequence (CDS) from alignment at sc0000041:513018..514900

>TCONS_00004337 ID=TCONS_00004337|Name=TCONS_00004337|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000041:513018..514900 (Clytia hemisphaerica)
GGTGCATTATTTCCTGATGACAATACCCAAGCGTCGTTCAGTCAAATTTA
TCTCATTGAGGCAGCACAAGCATTGAACAACAGAATGGCAAATCCTTCTG
CTGCCGATTGTAATCGCAATACTATGGCTACCATACAAACTGTTTTACAC
CAAGTTTCCCCTTGGGTAAGACAATATATGAATATGAAAGAAGTTGAAGA
AAGAGAACAGATCCGTGCTGCTGAGGAGAATCGTCCGACATCTGAAATGA
GGATGATCATGCGCTCTGGTAATGATAACAGGCGTGGAAATGCACCAGTC
AACAATGAAGTTGCTGCTGTTTTTGTTGGCAATGATGGTGCTCCCCCAAC
CACCAGAGATGTTGTTGTTTATCCCAGGGACCAACCATTGAGAAAAATTG
ATTATACATCACAACTCAATGATCCATTAACCTATCCGTTGTTGTTCCCT
CACGCTGATCTAGGATGGAATACCCAGATGGCATACAATCTTGATAATCA
AATACTAAATCGTCCTCGAAGAGACAGGGTAAGTATGAAAGAGTTCTATC
AACATCGTATTGCTGTATTGACATGTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002417XLOC_002417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004337-proteinTCONS_00004337-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004337-exon-sc0000041-1491911889:513018..514900TCONS_00004337-exon-sc0000041-1491911889:513018..514900Clytia hemisphaericaexon
TCONS_00004337-exon-sc0000041-1510915933:513018..514900TCONS_00004337-exon-sc0000041-1510915933:513018..514900Clytia hemisphaericaexon
TCONS_00004337-exon-sc0000041-1575043694:513018..514900TCONS_00004337-exon-sc0000041-1575043694:513018..514900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:513018..514900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.91467 8.123 8.90653 8.40326 12.4139 9.05271 7.89861 9.77816 2.80799 2.37129 2.18852 1.82832 1.49465 1.39299 1.09077 1.34774 1.49475 1.47825 1.0396 1.18579 2.7264 2.76847 6.65434 5.83262 2.05977 3.18571 1.93028 1.36598 4.20863 4.33926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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