TCONS_00004329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004329
Unique NameTCONS_00004329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004329 ID=TCONS_00004329|Name=TCONS_00004329|organism=Clytia hemisphaerica|type=transcript|length=1325bp
gtcatttttcagtaCAAAACCAAtagaaaatgatttcaaaaagacttcaa
aaataaatttaaaccgGTTCATTAGAAAGACCTGAAAGAGTAGATAACGA
AAATTGGGCTATTTGCCAATTTATAACTCCAAAGGGACCtctttgccaaa
tttcagccacatACTATTTTTTCAAGGTAAAACCCAATTCCCACATACTA
ATTTCCTTATCAACTTGTTCGTATACGACTTTCTGACTTAACAAATAAGT
GGcttgattttcttttccttttttaggTCATTTTCAAAGCTTATTCATCA
AAACGAGAAATTATTTCAATCATCAACCTTCGTAACGTTAATTTGTAACT
CGACATTTGCTGATTCGTTATCATGCTGTTACCTGTTACCTTTTTGTTAT
TTGTTCCACCATTTCCCTTGATGTCCTGGTGTATGTGTCGATTCAAATCA
GTTTCTTATATTGCCTACACGATTGCTGTATTTCTATCTACAACGAATGA
CCAATAATTTAGATTCAACAAAACCTGAACGTTATAAATGATGCAATGGT
GCTGACTTCTGACTTACATGTTGCTAACACAATGTCGCTTATTTTCCTGG
TTGTAAACTGGTGTTCCTGGTCGTTTAATTGTTTTAACTGAAATTTCATA
CCATACAACGTGGTCTTTGGAAATTGAATTGTGTAGAGACGGACTATTTT
TAAAGCAGGAAGCATATTTTTATAAAGAGTTCTTAGTATTTTAAAGACTT
TAAACGATAATATTTTTACACGATGAATAAGAATCTTATTACAATACATC
TTATACAGTCCTActtgcaatttcttttttccactCTTCTATTACACTCA
Gtcttaaaacaacaaaaaagaaatctttattttccagaaaaatttgtcct
ataaatcctacctaagtttACCCTGATTGCGTATATTGTGAAACGTTCTT
CTCAAACCTAATTATTCCAAAGTAATCTTGAGGTTGAGTCAGAATATACT
CCTCAGTTGTCACGTCCTACCGCCGGGCTTTAAGGATGACAGCCAAGAAA
AGGACTTTACATCTAATTTCAACTTTAGACATAATGTTGTTTTAAAAGGC
TTTTATCGTCGTAACTAAATGTTACTCATCAAATTATAATGGCTGGCAAT
AAATGTTTAACTCCAGCGGTTTCGGGGCATTTATAGCTTCAGCTAACTgc
tagttttattttttttattttacttatttatttattttttacatagtcta
gtacctctggcgatataacgttagttcctagcggggggagggactatatt
ttatgtttaagtaatgttttttgta
Run BLAST on NCBI

transcript from alignment at sc0000041:419851..421175

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004329 ID=TCONS_00004329|Name=TCONS_00004329|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at sc0000041:419851..421175 (Clytia hemisphaerica)
tacaaaaaacattacttaaacataaaatatagtccctccccccgctagga actaacgttatatcgccagaggtactagactatgtaaaaaataaataaat aagtaaaataaaaaaaataaaactagcAGTTAGCTGAAGCTATAAATGCC CCGAAACCGCTGGAGTTAAACATTTATTGCCAGCCATTATAATTTGATGA GTAACATTTAGTTACGACGATAAAAGCCTTTTAAAACAACATTATGTCTA AAGTTGAAATTAGATGTAAAGTCCTTTTCTTGGCTGTCATCCTTAAAGCC CGGCGGTAGGACGTGACAACTGAGGAGTATATTCTGACTCAACCTCAAGA TTACTTTGGAATAATTAGGTTTGAGAAGAACGTTTCACAATATACGCAAT CAGGGTaaacttaggtaggatttataggacaaatttttctggaaaataaa gatttcttttttgttgttttaagaCTGAGTGTAATAGAAGagtggaaaaa agaaattgcaagTAGGACTGTATAAGATGTATTGTAATAAGATTCTTATT CATCGTGTAAAAATATTATCGTTTAAAGTCTTTAAAATACTAAGAACTCT TTATAAAAATATGCTTCCTGCTTTAAAAATAGTCCGTCTCTACACAATTC AATTTCCAAAGACCACGTTGTATGGTATGAAATTTCAGTTAAAACAATTA AACGACCAGGAACACCAGTTTACAACCAGGAAAATAAGCGACATTGTGTT AGCAACATGTAAGTCAGAAGTCAGCACCATTGCATCATTTATAACGTTCA GGTTTTGTTGAATCTAAATTATTGGTCATTCGTTGTAGATAGAAATACAG CAATCGTGTAGGCAATATAAGAAACTGATTTGAATCGACACATACACCAG GACATCAAGGGAAATGGTGGAACAAATAACAAAAAGGTAACAGGTAACAG CATGATAACGAATCAGCAAATGTCGAGTTACAAATTAACGTTACGAAGGT TGATGATTGAAATAATTTCTCGTTTTGATGAATAAGCTTTGAAAATGAcc taaaaaaggaaaagaaaatcaagCCACTTATTTGTTAAGTCAGAAAGTCG TATACGAACAAGTTGATAAGGAAATTAGTATGTGGGAATTGGGTTTTACC TTGAAAAAATAGTatgtggctgaaatttggcaaagaGGTCCCTTTGGAGT TATAAATTGGCAAATAGCCCAATTTTCGTTATCTACTCTTTCAGGTCTTT CTAATGAACcggtttaaatttatttttgaagtctttttgaaatcattttc taTTGGTTTTGtactgaaaaatgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002409XLOC_002409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004329-exon-sc0000041-1491911889:419851..421175TCONS_00004329-exon-sc0000041-1491911889:419851..421175Clytia hemisphaericaexon
TCONS_00004329-exon-sc0000041-1510915933:419851..421175TCONS_00004329-exon-sc0000041-1510915933:419851..421175Clytia hemisphaericaexon
TCONS_00004329-exon-sc0000041-1575043694:419851..421175TCONS_00004329-exon-sc0000041-1575043694:419851..421175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:419851..421175 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8767 1.31878 1.25318 1.03271 37.6691 23.3639 30.7656 36.9008 19.9205 14.476 20.1939 18.9321 11.8712 12.778 9.25711 9.85662 10.5574 10.1242 20.1938 18.2942 42.4648 37.6736 13.8058 17.6393 4.1147 10.2255 24.5212 21.0472 16.1004 11.9085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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