TCONS_00004326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004326
Unique NameTCONS_00004326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004326 ID=TCONS_00004326|Name=TCONS_00004326|organism=Clytia hemisphaerica|type=transcript|length=571bp
CAGATGCTACGCTCACCATTCATATTATCTGAGGTTCCCCATAGTTTTCC
tcaacatttttgcaaaaaaacaatcaatgCATCGCAAAAAAACACTAGTA
AAATTTTGGCAATTCACAGTCTCAGTTACCCAGAAGGCGGATGTTTTACA
AACGTGAAAAAGACGTTCTTACTTGGAATGCAGTTGGCGACGGTGTAACG
GTGTATCTAATAAACTTAATAAGTGGTCTGCCGCACAAATTATTATGTTA
TCAAACACAGATTACCTTCTCTACTTTTAAAGAACTCATTTAAAATTAAA
GCAGTCAGTGGAAAATCGGAAATTAATCAACCTTTCACAATCTATGTCTT
GCTGAAAATAGATTTTATGCACGACCCTCCCAATTACTTTTAAATTAACG
GCACAGCTTGGTGTTTAAGATTTTAATGAGCTTCGTCCGAATGTATCTTC
ATCTTGATAAAACCACGGAACGACTTCCTCATGGGGcagtgattttattt
tttgtcgATTCATGCTGATTCTATATTCAATATTCAGACTCCTTTATGgt
actaaaaatattttctatttc
Run BLAST on NCBI

transcript from alignment at sc0000041:327473..328043

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004326 ID=TCONS_00004326|Name=TCONS_00004326|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000041:327473..328043 (Clytia hemisphaerica)
gaaatagaaaatatttttagtacCATAAAGGAGTCTGAATATTGAATATA
GAATCAGCATGAATcgacaaaaaataaaatcactgCCCCATGAGGAAGTC
GTTCCGTGGTTTTATCAAGATGAAGATACATTCGGACGAAGCTCATTAAA
ATCTTAAACACCAAGCTGTGCCGTTAATTTAAAAGTAATTGGGAGGGTCG
TGCATAAAATCTATTTTCAGCAAGACATAGATTGTGAAAGGTTGATTAAT
TTCCGATTTTCCACTGACTGCTTTAATTTTAAATGAGTTCTTTAAAAGTA
GAGAAGGTAATCTGTGTTTGATAACATAATAATTTGTGCGGCAGACCACT
TATTAAGTTTATTAGATACACCGTTACACCGTCGCCAACTGCATTCCAAG
TAAGAACGTCTTTTTCACGTTTGTAAAACATCCGCCTTCTGGGTAACTGA
GACTGTGAATTGCCAAAATTTTACTAGTGTTTTTTTGCGATGcattgatt
gtttttttgcaaaaatgttgaGGAAAACTATGGGGAACCTCAGATAATAT
GAATGGTGAGCGTAGCATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002406XLOC_002406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004326-exon-sc0000041-1491911889:327473..328043TCONS_00004326-exon-sc0000041-1491911889:327473..328043Clytia hemisphaericaexon
TCONS_00004326-exon-sc0000041-1510915933:327473..328043TCONS_00004326-exon-sc0000041-1510915933:327473..328043Clytia hemisphaericaexon
TCONS_00004326-exon-sc0000041-1575043694:327473..328043TCONS_00004326-exon-sc0000041-1575043694:327473..328043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:327473..328043 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19601	0.19114	0	0.108563	0	0.104439	0	0	0	0	0.397168	0.0652707	0	0	0.0556504	0.0597214	0.0735718	0.0754088	0	0	0	0	0	0.102161	0.105223	0.0939094	0	0.143418	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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