TCONS_00004322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004322
Unique NameTCONS_00004322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004322 ID=TCONS_00004322|Name=TCONS_00004322|organism=Clytia hemisphaerica|type=transcript|length=1629bp
CTCAAATATAATGCTGTTTTCTCTCCTTAAATTTAGTAAAATACGAATTT
ACCACCTACTATGAATGATCCCTTTGTATACTGGTGTTATTAGTTTATTT
GATAACTTGTTGGACAGTGGATATGATGAAACGCTTCGTAACAATTCTTG
GTGTATCAACACTTGGAATTATAGTAGTTCTCTATCTCACAAATGAAAAT
TCTAGAAGTCAAATAAATTATGGAAGTCCTAACTTTTTACTGAAGACTAC
AAATCTTCCACAAGTCGTCCATTCAAAAGACAATAAATTCGAAAACGAAG
ATGACTTAGTAAATGAACTAGAAAAGCATTCAAAGACCAGAAAACCTTTT
AATGGAGCAAGGTCAGAACATGATCAAATAACTGCAGAAGAGTTGGAAGA
CTTTCATGACAAAAATGATGAAGAGTTTGATAAAATAAATGAGATTGATA
TTGGGATAAATAAAGACAAGGGTAATAGGGTTCATATTGAAAAGACTCTC
AATACACCAAAGACAACTCCTACTCTACTTGAAAGCCAAACGCCTTCCAT
CAATGGAATCAAAATGGAAggaaaactgaaaaaaagatttccacAAGCTA
TCATTGCTGGTGTCAAAAAGTGTGGAACACGAGCTCTTTTATCTTTTGTT
GGAAGGCATCCATTAGTAAAATCAGCTGGAATGGAGATGcatttttttga
taagaatgatacgtATCAAGAAGGGCTTGATTGGTACCTGGATCAGATGC
CAGAGTCTTATGAAAACCAAGTAACCATAGAAAAAACACCTGGATACTAT
GTAAAACCATACGTACCGAAACGAGTGTATGAATTTTCTAAAACTGTCAA
GCTTATTTTTATCTATCGTGAACCAGTTGAGAGGGCCATCTCTGACTATA
CTCAAGCTTTAGCCAATGAAAAAGatgtgaaatttgaaaaattaattctt
acaaaaacaaaaccaagaaaaatcaatgaaaaaagtAGTAAAGTTGATAT
TGGAATATATTCTAAACATTTGATGCGTTGGCTTCAATACTTTCCCAAAA
AGCAAATGCATTTTGTTAATGGAGATGAGTTTATCAAAAACCCAGTTCCT
CAACTGATTGAAGTACAAAAGTTTCTTGAGTTACCAGTTCTTCTAGATGA
AAGACACTTTGTTTTCAACAAAACCAAAGGATTTTACTGTGTTAAAGACA
CTGATGAAACAGACGGAAAATGTTTGGGTGATTCAAAAGGAAGAACGCAT
CCTACAGTAAAACGTTCAGCTCGGAGGaaactgaaagatttttataaatt
tcacaATGAGgtgttttttaatttgattggtaaaaattttggatggcCAA
CTACAAAATATGATCCTGAAGAGAATTACAAGACATAATTTTTAGGTTTT
AgttattttttacaatttttttaacagATTCAGATTGGAGCAGATTGGAG
TAGATagcaaaaaaatgatgaaatttttctccctctttctgatttttttt
acttttacctACTTTTGAAATCTCTTGAAATCATCTTGAATGAGATTATT
TTCTGGAGTAAATCTTATCAATTAGTCTCTTTACAGATATTaccaatttt
tgttgaaattgtaTATAAtcatttataac
Run BLAST on NCBI

protein sequence of TCONS_00004322-protein

>TCONS_00004322-protein ID=TCONS_00004322-protein|Name=TCONS_00004322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MMKRFVTILGVSTLGIIVVLYLTNENSRSQINYGSPNFLLKTTNLPQVVH
SKDNKFENEDDLVNELEKHSKTRKPFNGARSEHDQITAEELEDFHDKNDE
EFDKINEIDIGINKDKGNRVHIEKTLNTPKTTPTLLESQTPSINGIKMEG
KLKKRFPQAIIAGVKKCGTRALLSFVGRHPLVKSAGMEMHFFDKNDTYQE
GLDWYLDQMPESYENQVTIEKTPGYYVKPYVPKRVYEFSKTVKLIFIYRE
PVERAISDYTQALANEKDVKFEKLILTKTKPRKINEKSSKVDIGIYSKHL
MRWLQYFPKKQMHFVNGDEFIKNPVPQLIEVQKFLELPVLLDERHFVFNK
TKGFYCVKDTDETDGKCLGDSKGRTHPTVKRSARRKLKDFYKFHNEVFFN
LIGKNFGWPTTKYDPEENYKT
Run BLAST on NCBI

transcript from alignment at sc0000041:269621..271249

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004322 ID=TCONS_00004322|Name=TCONS_00004322|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at sc0000041:269621..271249 (Clytia hemisphaerica)
gttataaatgaTTATAtacaatttcaacaaaaattggtAATATCTGTAAA
GAGACTAATTGATAAGATTTACTCCAGAAAATAATCTCATTCAAGATGAT
TTCAAGAGATTTCAAAAGTaggtaaaagtaaaaaaaatcagaaagaggga
gaaaaatttcatcatttttttgctATCTACTCCAATCTGCTCCAATCTGA
ATctgttaaaaaaattgtaaaaaataacTAAAACCTAAAAATTATGTCTT
GTAATTCTCTTCAGGATCATATTTTGTAGTTGgccatccaaaatttttac
caatcaaattaaaaaacacCTCATtgtgaaatttataaaaatctttcagt
ttCCTCCGAGCTGAACGTTTTACTGTAGGATGCGTTCTTCCTTTTGAATC
ACCCAAACATTTTCCGTCTGTTTCATCAGTGTCTTTAACACAGTAAAATC
CTTTGGTTTTGTTGAAAACAAAGTGTCTTTCATCTAGAAGAACTGGTAAC
TCAAGAAACTTTTGTACTTCAATCAGTTGAGGAACTGGGTTTTTGATAAA
CTCATCTCCATTAACAAAATGCATTTGCTTTTTGGGAAAGTATTGAAGCC
AACGCATCAAATGTTTAGAATATATTCCAATATCAACTTTACTacttttt
tcattgatttttcttggttttgtttttgtaagaattaatttttcaaattt
cacatCTTTTTCATTGGCTAAAGCTTGAGTATAGTCAGAGATGGCCCTCT
CAACTGGTTCACGATAGATAAAAATAAGCTTGACAGTTTTAGAAAATTCA
TACACTCGTTTCGGTACGTATGGTTTTACATAGTATCCAGGTGTTTTTTC
TATGGTTACTTGGTTTTCATAAGACTCTGGCATCTGATCCAGGTACCAAT
CAAGCCCTTCTTGATacgtatcattcttatcaaaaaaatgCATCTCCATT
CCAGCTGATTTTACTAATGGATGCCTTCCAACAAAAGATAAAAGAGCTCG
TGTTCCACACTTTTTGACACCAGCAATGATAGCTTgtggaaatctttttt
tcagttttccTTCCATTTTGATTCCATTGATGGAAGGCGTTTGGCTTTCA
AGTAGAGTAGGAGTTGTCTTTGGTGTATTGAGAGTCTTTTCAATATGAAC
CCTATTACCCTTGTCTTTATTTATCCCAATATCAATCTCATTTATTTTAT
CAAACTCTTCATCATTTTTGTCATGAAAGTCTTCCAACTCTTCTGCAGTT
ATTTGATCATGTTCTGACCTTGCTCCATTAAAAGGTTTTCTGGTCTTTGA
ATGCTTTTCTAGTTCATTTACTAAGTCATCTTCGTTTTCGAATTTATTGT
CTTTTGAATGGACGACTTGTGGAAGATTTGTAGTCTTCAGTAAAAAGTTA
GGACTTCCATAATTTATTTGACTTCTAGAATTTTCATTTGTGAGATAGAG
AACTACTATAATTCCAAGTGTTGATACACCAAGAATTGTTACGAAGCGTT
TCATCATATCCACTGTCCAACAAGTTATCAAATAAACTAATAACACCAGT
ATACAAAGGGATCATTCATAGTAGGTGGTAAATTCGTATTTTACTAAATT
TAAGGAGAGAAAACAGCATTATATTTGAG

Coding sequence (CDS) from alignment at sc0000041:269621..271249

>TCONS_00004322 ID=TCONS_00004322|Name=TCONS_00004322|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at sc0000041:269621..271249 (Clytia hemisphaerica)
TTATGTCTTGTAATTCTCTTCAGGATCATATTTTGTAGTTGgccatccaa
aatttttaccaatcaaattaaaaaacacCTCATtgtgaaatttataaaaa
tctttcagtttCCTCCGAGCTGAACGTTTTACTGTAGGATGCGTTCTTCC
TTTTGAATCACCCAAACATTTTCCGTCTGTTTCATCAGTGTCTTTAACAC
AGTAAAATCCTTTGGTTTTGTTGAAAACAAAGTGTCTTTCATCTAGAAGA
ACTGGTAACTCAAGAAACTTTTGTACTTCAATCAGTTGAGGAACTGGGTT
TTTGATAAACTCATCTCCATTAACAAAATGCATTTGCTTTTTGGGAAAGT
ATTGAAGCCAACGCATCAAATGTTTAGAATATATTCCAATATCAACTTTA
CTacttttttcattgatttttcttggttttgtttttgtaagaattaattt
ttcaaatttcacatCTTTTTCATTGGCTAAAGCTTGAGTATAGTCAGAGA
TGGCCCTCTCAACTGGTTCACGATAGATAAAAATAAGCTTGACAGTTTTA
GAAAATTCATACACTCGTTTCGGTACGTATGGTTTTACATAGTATCCAGG
TGTTTTTTCTATGGTTACTTGGTTTTCATAAGACTCTGGCATCTGATCCA
GGTACCAATCAAGCCCTTCTTGATacgtatcattcttatcaaaaaaatgC
ATCTCCATTCCAGCTGATTTTACTAATGGATGCCTTCCAACAAAAGATAA
AAGAGCTCGTGTTCCACACTTTTTGACACCAGCAATGATAGCTTgtggaa
atctttttttcagttttccTTCCATTTTGATTCCATTGATGGAAGGCGTT
TGGCTTTCAAGTAGAGTAGGAGTTGTCTTTGGTGTATTGAGAGTCTTTTC
AATATGAACCCTATTACCCTTGTCTTTATTTATCCCAATATCAATCTCAT
TTATTTTATCAAACTCTTCATCATTTTTGTCATGAAAGTCTTCCAACTCT
TCTGCAGTTATTTGATCATGTTCTGACCTTGCTCCATTAAAAGGTTTTCT
GGTCTTTGAATGCTTTTCTAGTTCATTTACTAAGTCATCTTCGTTTTCGA
ATTTATTGTCTTTTGAATGGACGACTTGTGGAAGATTTGTAGTCTTCAGT
AAAAAGTTAGGACTTCCATAATTTATTTGACTTCTAGAATTTTCATTTGT
GAGATAGAGAACTACTATAATTCCAAGTGTTGATACACCAAGAATTGTTA
CGAAGCGTTTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002402XLOC_002402Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004322-proteinTCONS_00004322-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004322-exon-sc0000041-1491911889:269621..271249TCONS_00004322-exon-sc0000041-1491911889:269621..271249Clytia hemisphaericaexon
TCONS_00004322-exon-sc0000041-1510915933:269621..271249TCONS_00004322-exon-sc0000041-1510915933:269621..271249Clytia hemisphaericaexon
TCONS_00004322-exon-sc0000041-1575043694:269621..271249TCONS_00004322-exon-sc0000041-1575043694:269621..271249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:269621..271249 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.74451	8.08873	3.47949	3.48717	14.2857	10.8894	20.7504	23.1551	12.3165	13.4044	10.2516	7.07175	7.47733	6.12594	9.29244	8.61721	10.0155	8.84301	5.89607	7.22591	8.52716	6.89281	23.4615	23.5436	5.79411	8.3791	9.35256	5.81329	19.4946	16.3021
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000863Sulfotransferase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008146 sulfotransferase activity
Blast
[Close]
BLAST of TCONS_00004322 vs. Swiss-Prot (Human)
Match: HS3SA (Heparan sulfate glucosamine 3-O-sulfotransferase 3A1 OS=Homo sapiens GN=HS3ST3A1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.478e-68
Identity = 122/257 (47.47%), Postives = 165/257 (64.20%), Query Frame = 3 
Query:  582 KRFPQAIIAGVKKCGTRALLSFVGRHPLVKSAGMEMHFFDKNDTYQEGLDWYLDQMPESYENQVTIEXXXXXXXXXXXXXXXXEFSKTVKLIFIYREPVERAISDYTQALANEKDVK-FEKLILTKTKPRKINEKSSKVDIGIYSKHLMRWLQYFPKKQMHFVNGDEFIKNPVPQLIEVQKFLELPVLLDERHFVFNKTKGFYCVKDTD-ETDGKCLGDSKGRTHPTVKRSARRKLKDFYKFHNEVFFNLIGKNFGW 1346
            K+ PQAII GVKK GTRALL F+  HP V++ G E HFFD++  Y +GL WY D MP + + Q+T+EKTP Y+V    P R+   SK  KLI + R+PV RAISDYTQ L+   D+  FE L         I+   S + IGIY+KHL  WL++FP +QM FV+G+  I +P  +L  VQ FL L  ++ ++HF FNKTKGF C+K  +  +   CLG +KGRTHP + R   R+L++FY+  N  F+ + G +FGW
Sbjct:  150 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRS--YDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGW 404
The following BLAST results are available for this feature:
BLAST of TCONS_00004322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HS3SA1.478e-6847.47Heparan sulfate glucosamine 3-O-sulfotransferase 3... [more]
back to top