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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004305 ID=TCONS_00004305|Name=TCONS_00004305|organism=Clytia hemisphaerica|type=transcript|length=3327bpRun BLAST on NCBI protein sequence of TCONS_00004305-protein >TCONS_00004305-protein ID=TCONS_00004305-protein|Name=TCONS_00004305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp MPRKTTIACCSLSQWALDFEGNLRRILESIRLAKEIGARYRVGPELEISGRun BLAST on NCBI transcript from alignment at sc0000041:687641..709020- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004305 ID=TCONS_00004305|Name=TCONS_00004305|organism=Clytia hemisphaerica|type=transcript|length=21380bp|location=Sequence derived from alignment at sc0000041:687641..709020- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:687641..709020- >TCONS_00004305 ID=TCONS_00004305|Name=TCONS_00004305|organism=Clytia hemisphaerica|type=CDS|length=29835bp|location=Sequence derived from alignment at sc0000041:687641..709020- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004305 vs. Swiss-Prot (Human)
Match: NADE (Glutamine-dependent NAD(+) synthetase OS=Homo sapiens GN=NADSYN1 PE=1 SV=3) HSP 1 Score: 891.338 bits (2302), Expect = 0.000e+0 Identity = 409/691 (59.19%), Postives = 527/691 (76.27%), Query Frame = 3
Query: 78 MPRKTTIACCSLSQWALDFEGNLRRILESIRLAKEIGARYRVGPELEISGYGCNDHFLESDTFLHSWESLACILENSVCENILVDVGMPVLRNQVTYNCRVIIYNKKILLVRPKMRLARDGNYREHRWFTAWTKKMELEDIRLPPLINKITGQSKAPFGDALLVTVDSVIGYETCQELFEIHTSHSDLALSGAEIVFNSSGSHHELRKLSQRIKLISDGLNKTGGVYVYSNLKGCDGERVYYDGASMIFINSELVGQSNQFSLDEVEMISAVVDLDDIYAARNGVSFGSEVESQKKRYPKVATDIILCHHDGLTMPTSRVIPATIHRPEEEIALGPACWLWDYLRRSGCNGFFLPLSGGVDSSATACIVASMCRLVCQSVKRGNAQTLSDTRKMVNDQTYVPKDPNELCGRIFVTCYMGTENSSVDTQARARNLASDIGSYHLGIFIDTAIKALIGIFTTVTGKTPKFRFYGGTNTENLALQNIQARTRMVLSYLFAQLTLWSRGSPGSLLVLGSANVDESLLGYMTKYDCSSADLNPIGGISKNDLKKFIFYCVEKYNFTSLIGILGAPPTAELEPLKDGQLQQTDEQDMGLTYDELSLFGRLRKVDRCGPYSMFTKLLNLWHSVC-PNDIADKVKTFFKKYAINRHKMTTVTPSYHAEAYSPDDNRFDMRPFLYRTSWPWQFRSIDRAV 2147
M RK T+A C+L+QWALDFEGNL+RIL+SI +AK GARYR+GPELEI GYGC DH+ ESDT LHS++ LA ++E+ V ++I+ DVGMPV+ V YNCRVI N+KILL+RPKM LA +GNYRE RWFT W++ E+ LP +I +T Q PFGDA+LVT D+ IG E C+EL+ H+ H D+ L G EI+ N+SGSH LRK + R+ L++ +K GG+Y+ +N KGCDG+R+YYDG +MI +N + Q +QFSLD+VE+++A +DL+D+ + R +S + S+ YP+V D L H+ L P S I H PEEEI+LGPACWLWD+LRRS GF LPLSGGVDS+ATAC++ SMC VC++V+ GN + L+D R +VN +Y P+DP +LCGRI TCYM ++NSS +T RAR LA IGS+H+ + ID A+KA++GIF+ VTGK+P F +GG++ ENLALQN+QAR RMVL+YLFAQL+LWSRG G LLVLGSANVDESLLGY+TKYDCSSAD+NPIGGISK DL+ F+ +C++++ +L IL AP TAELEPL DGQ+ QTDE+DMG+TY ELS++G+LRKV + GPYSMF KLL +W +C P +ADKVK FF KY++NRHKMTT+TP+YHAE YSP+DNRFD+RPFLY TSWPWQFR I+ V
Sbjct: 1 MGRKVTVATCALNQWALDFEGNLQRILKSIEIAKNRGARYRLGPELEICGYGCWDHYYESDTLLHSFQVLAALVESPVTQDIICDVGMPVMHRNVRYNCRVIFLNRKILLIRPKMALANEGNYRELRWFTPWSRSRHTEEYFLPRMIQDLTKQETVPFGDAVLVTWDTCIGSEICEELWTPHSPHIDMGLDGVEIITNASGSHQVLRKANTRVDLVTMVTSKNGGIYLLANQKGCDGDRLYYDGCAMIAMNGSVFAQGSQFSLDDVEVLTATLDLEDVRSYRAEISSRNLAASRASPYPRVKVDFALSCHEDLLAPISEPIEWKYHSPEEEISLGPACWLWDFLRRSQQAGFLLPLSGGVDSAATACLIYSMCCQVCEAVRSGNEEVLADVRTIVNQISYTPQDPRDLCGRILTTCYMASKNSSQETCTRARELAQQIGSHHISLNIDPAVKAVMGIFSLVTGKSPLFAAHGGSSRENLALQNVQARIRMVLAYLFAQLSLWSRGVHGGLLVLGSANVDESLLGYLTKYDCSSADINPIGGISKTDLRAFVQFCIQRFQLPALQSILLAPATAELEPLADGQVSQTDEEDMGMTYAELSVYGKLRKVAKMGPYSMFCKLLGMWRHICTPRQVADKVKRFFSKYSMNRHKMTTLTPAYHAENYSPEDNRFDLRPFLYNTSWPWQFRCIENQV 691 The following BLAST results are available for this feature:
BLAST of TCONS_00004305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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