TCONS_00004286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004286
Unique NameTCONS_00004286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3007

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004286 ID=TCONS_00004286|Name=TCONS_00004286|organism=Clytia hemisphaerica|type=transcript|length=3007bp
cggcgatggctcagtggatagagcgctggcttccaaatctgaaggtcttt
ctttggtggtggttcgaatcccactcggtgcgataATTaggttggtcgaa
attgatggacaaatgattgacaggtatgaaaactcagtcagaaatgagaa
actaagtctcagaaactcagaaactcagacagtcagaaaagagagagaca
ggatcagagataagaaaataaaaaaaaaacatgagggTACTTTGGGTGAT
CCGATGTAACTCTTTCCTGGGTAAATTGCCTAACCGATGGATAAATTGCC
GAACAGTTAAAAAATGGTAGCCTGAGTAGCGAAAGATTTGAATTGTGGCA
ACTAAGAAATTTTCACACTGGAACAGGAAACACCTTCGCTTCTCAAATTC
GTTTAACATACCTCACAAGAAAGTTTGCACAATCATCATGACAACCATCA
CATCATGAAAAAGATGGGGTGTGGATACTCAAAGCTTCTATCAAAACAAC
ACAAGTCTAGTACAAAGCCCTTCGATGAAGATGCTATGAGAGATAGACAT
GTTTCAACAGAATCAAAGGAAAATCCATCATCTCAAGGTCATCAAGATGT
CTCCAAAACTAGTAATCACTTTACAATACCAAGTATTGATGATTTACCAC
TAAACAAAGATAGTTGCATAACTATGCATGATTTGTACAATCTTTTAAAT
GATGGTGCTATGAAAATGTACATTCATGATCCATTTAACCTTTTGCTAAT
TGATGGTAGAGAACTGGATTTATATTCCACGCAACATGTCATAACAGCAA
AACATCATTCAATCTTTGGATCAGATagcaattttgttttgagactTTCA
AATTATGGAATGGTGATTATTTATGGGTCAGAGCTGCAAGTGAATAAATC
GTCAACTGATTCATTGTTAAAATTGCGGGCTGAAGTACAAGAATATGTAG
CAAGTGATGTTTTAGTGTTAGTGGAAGGTTTCGATCAATTTCATTTGAAC
TACCCCTTTCTATGCACTGATAAACTCATAGAAACAGTTGCTGATCGAAA
AGAGCTGCTGTGTTACCCATCTATGGTATTGGATTCTAAGCTTTTTCAAG
GGCGAGGTGACCAAGCTACCAATGAGAATATTattgatgttttgaaaatt
actCACATTGTGAATATCACCTTGGAACATCAAAAcgcttttccaaaaaa
ggttAAGTATTTCCGATTGGAACTAGACGATGTTGGGGAGTCAAACTTAT
TCGAACATTTCCATAAAACAtctgattttataaatgaagCACTTTCCACG
AAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTGTTAGCCGAAGCTC
TACAATCACTTTAGCTTATCTCATGAAGTACAAACAATGGAGTCTGGATC
TTGCgttcaaaaccttaaaatccaGAAGATCTTGCGCTGCGCCTAATGAT
GGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGATGCTGGGACAAAA
ACTCACTGATATCGATTCCCTGTTTTAAGTTTCTGAAATTCTGAATTGGG
TGTAGTTTTGTCCCGTTAAATTCTAGAATTCTAGTTTAAAACACTTGCAT
CAGTTTGAAGTACTTGATTAGACTCTTCCTTTTCCTTTGTTTTATCTTTT
GTAGACGTATGGTCAAACCTAGTTTGTGTCGTAAAGCTGTAGTATTTGAT
CGGTTTGATtggtttttattaaaattatagTTTTGATACTTTTTCATATC
TATTTAATAGAAAGTTTGTGAATAANGTCTATGGTATTGGATTCTAAGCT
TTTTCAAGGGCGAGGTGACCAAGCTACCAATGAGAATATTattgatgttt
tgaaaattactCACATTGTGAATATCACCTTGGAACATCAAAAcgctttt
ccaaaaaaggttAAGTATTTCCGATTGGAACTAGACGATGTTGGGGAGTC
AAACTTATTCGAACATTTCCATAAAACAtctgattttataaatgaagCAC
TTTCCACGAAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTGTTAGC
CGAAGCTCTACAATCACTTTAGCTTATCTCATGAAGTACAAACAATGGAG
TCTGGATCTTGCgttcaaaaccttaaaatccaGAAGATCTTGCGCTGCGC
CTAATGATGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGATGCTG
GGACAAAAACTCACTGATATCGATTCCCTGTTTTAAGTTTCTGAAATTCT
GAATTGGGTGTAGTTTTGTCCCGTTAAATTCTAGAATTCTAGTTTAAAAC
ACTTGCATCAGTTTGAAGTACTTGATTAGACTCTTCCTTTTCCTTTGTTT
TATCTTTTGTAGACGTATGGTCAAACCTAGTTTGTGTCGTAAAGCTGTAG
TATTTGATCGGTTTGATtggtttttattaaaattatagTTTTGATACTTT
TTCATATCTATTTAATAGAAAGTTTGTGAATAACATTGAAGAATATTTTG
TAAGATATAATAGCTATTTATAATGAACATTGTGgcataatttataattt
ttagatATTAATGATTTTTGTATATAAAAGAATGTTAATTCCTTGACAGG
TGATTGTTAGCTCTGGTGAAATATCAACTTCACTGAGAAACACTTTTGCT
TTGTTGAAGTCATAAAATAATTTACTCTTCACTCTTTCAAGCAACCAGAG
ATTTAAAAACATTGGCTTTTGGTttccatttatttatttaatagTTTAGA
TTTATTATTTTCTGGTCTTAAATAGTTTtcacaaatttttatttgtttgc
tCTGGGTTAATCTTTCTAGCTTAGCGGGTGTTGCtcattatttcaatttt
taagatattaaattaTTTATAATAGTAGTGAGTATATGATTGAAAAGTCT
TTTAATCAAATATAACAATCCTTTGGCTTCTAATTTAGCTTTCGATGTTA
TCATTTTagtctttttatttggagcttttCCTTTTTTAACTGCTCTAGTT
TTGACTG
Run BLAST on NCBI

protein sequence of TCONS_00004286-protein

>TCONS_00004286-protein ID=TCONS_00004286-protein|Name=TCONS_00004286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKKMGCGYSKLLSKQHKSSTKPFDEDAMRDRHVSTESKENPSSQGHQDVS
KTSNHFTIPSIDDLPLNKDSCITMHDLYNLLNDGAMKMYIHDPFNLLLID
GRELDLYSTQHVITAKHHSIFGSDSNFVLRLSNYGMVIIYGSELQVNKSS
TDSLLKLRAEVQEYVASDVLVLVEGFDQFHLNYPFLCTDKLIETVADRKE
LLCYPSMVLDSKLFQGRGDQATNENIIDVLKITHIVNITLEHQNAFPKKV
KYFRLELDDVGESNLFEHFHKTSDFINEALSTKIGRVLVHCNMGVSRSST
ITLAYLMKYKQWSLDLAFKTLKSRRSCAAPNDGFLQQLSKWEIEMLGQKL
TDIDSLF
Run BLAST on NCBI

transcript from alignment at sc0000041:383784..398641-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004286 ID=TCONS_00004286|Name=TCONS_00004286|organism=Clytia hemisphaerica|type=transcript|length=14858bp|location=Sequence derived from alignment at sc0000041:383784..398641- (Clytia hemisphaerica)
CGGCGATGGCTCAGTGGATAGAGCGCTGGCTTCCAAATCTGAAGGTCTTT
CTTTGGTGGTGGTTCGAATCCCACTCGGTGCGATAATTAGGTTGGTCGAA
ATTGATGGACAAATGATTGACAGGTATGAAAACTCAGTCAGAAATGAGAA
ACTAAGTCTCAGAAACTCAGAAACTCAGACAGTCAGAAAAGAGAGAGACA
GGATCAGAGATAAGAAAATAAAAAAAAAACATGAGGGTACTTTGGGTGAT
CCGATGTAACTCTTTCCTGGGTAAATTGCCTAACCGATGGATAAATTGCC
GAACAGTTAAAAAATGGTAGCCTGAGTAGCGAAAGATTTGAATTGTGGCA
ACTAAGAAATTTTCACACTGGAACAGGAAACACCTTCGCTTCTCAAATTC
GTTTAACATACCTCACGTAATTATATGTTGTTATTTTCTAACCCTTCTAA
CTATGAAAACCCAGCCTTGATTGTTTTTTTTCACAGCAATCCATTTTACA
AAGGTTCCCACTGATCTCACCACCAGTCTGGAAAGGAGGGAAATGTTACG
CCGGAGCTGCGCCAACCTAACTGGGAAAAGTTGAGGGCAGCAGATCTCAA
ACCTCAAATCTACGCCGGAGATATCCGGCGCACAAGCCGCAATGTCCAGA
CTGGTCTCACCACTTTTTATTTTCCACACACACACATTTTATTTGGATGT
CAACGCAACAACCCAATCCTGCTGATGCTGTTGCCCCGGACACCGGGGAT
TTCCTTGTTGCATTCAGGGGATGTACTTTAACATTGGCTGATCACATGGG
CGTCAATTTTGGCATCACTTTTCCAACTGCTTTCACACAAACTTAGACTT
AGTCAACCTCACATCACACGACGTCTGCCCCCCCCCAATAAATGGCATAC
CATTTAACTTGCATGCGATATGTGGTGAGCACAGTGCACAGAATCCGGCT
GCCCCACGATTCACTTACCGTCAACTGCTCCAACTACGACCCTGCCTATG
CGCCGGACAGTCCGGGGTTTTTTTGATGCGTGCCCGGGTATGGCGCGCCA
AAAGGCTTTTTAATACTAACTTTTTTTTATAATACCAACTTTTTTTTATA
ATACCAACTTTTTTTTATAATATCAACTTTTTTTTNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNACCCGGGGTCCGTATTATTTGTTTTTGA
GAGACTACCCCGGACGCCCCAGACAGCCCGCGCGGTCGCTTTTTATAGAA
TCGCTGACCGCGCGGGCTCGGCGATATACGTCCGGGGTAAATTTATGGCG
CAAAAATTGGAGCCCCGGACATAGGTCCGGGGAAAAAGTTATTCTTTTCA
GACCCCAGACATTTGCCCCGGGGCATAGGCAGGGTCGTCTCCAACTTGGG
ACTATCTTACGCAACATGGGACGGCCATTTCCACCGCCATTTCATTCACC
GAACCTCCAACAGAGTGTAGAAGGTGGCATGTATCCTAGGGTGGGTGGGT
GTTTGAGAAAAAAATTTGTCATGTACTACCTGTGTACTATAATTGGGGTT
TTGGGTCCAAAATCGATTTTGATTTTTACTACCTGTGTACCAGGGGGAGG
GGGGTGAAGCAGTTAGTACAAGACATCATGCCTACTAACTGCTTTCTCGG
AAGAACTTAGTAACACCACCACCTTGGTACACTTAGTACAGTTAGTACTA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTAGTACCAAAATTTGGC
AAATTTTTAGCAGGGGACCACCCTTTTTTGCAGTTAGTACATCTGAGTAC
TAAGTGACTTTATCCAATTCATATGGCACACTACCACGGTACTAACCGGC
ATGATGTCTTGTAGTAACTGCTTCACCCCCCCCCCTGTGTGTACCAAAAT
AGGAGTGTTGAGTCCAAAATTGATGTTAACAGTATGGGGTCCAAAATCGA
TTTTGATTTTTACTACCTGTGTACCAAAATAGGGGTGTTGAGTCCAAAAT
CGATGTTAACAGTATGGAAACAAAAAGGTTCAGAAATTATCTGCTAAAAT
ATAAATGTAAAGTTGCTCTATTATAAATTGATCAAGCCAAGTTTGTCCAA
GATCATTCTTCCAAACTTCTTGGAATGAATTGAAATCCTACCAGATCCCA
CTGAAATGAAGGTTTATTGAGCAGTGCGTCACAAACAGCCATATAAACAA
AACTCAACATTCTCACAAAAGTTGTCTTTTTGATTTCCCAAACATTCGTC
TCAAGCGTTCATTTCCACAATAATTTATGTAATTGCAATTTTGGTCAGTC
CACAGTCGGCTTCAACATATACATGTGTTTTTATTTACGTGACCGGAGTG
CTTACTAAAACAATCCGGGGGTAAATGGCGAAGCAACACAGCAGATTATT
CGTAAAGTAAAGAAATATCTTTTGGCATTGACAATCAAATATAATATATT
ATACTATATTTCCTTAATTCAAAAATCAAAAATTCATTTTTCATTCCTAA
AAAATAAAAATAAAAGAATAATGAATTAATATTACATACTAAGACGCCCC
CGTCTTTTACTCTTGTTTAATTTCCGATCTCGGAACGTGCAAAATGCCCG
TCCGCCCAATATCCACCCAATCAGCTTAAGTTCACTATAATTGTCCTTCG
ACATTCAAAAAATGGTATTTAAAAATTATGAATTTATAATAATTACAAAA
AACTAAAAGTTTGATACTTCATTAGTGAAATATTCAATAAATTTCTAGTT
TCAATTTTCAGTGGGTGTTCTTCTAGGGCTTCGTTTATCGCGCAATTTTT
GCGTCACACAAACTTTCTCGGCCGCTTGTCATAATTATGCATTGCCAAAT
TTGGTTCTCCATTGTCAAGTCAGGATCGATGGTGACGTCACCTAAGCATA
AAAAAGAAAGGATTTCATCATTTTTATGCATATATTAATTTACAAGATAT
TCTATTCGCCGCGCGAGCGCACTTTTCGTAGACTAGTCGGAATACTTTCT
GTTACTCGTGGGATTGATGGTAACTTTTCATCTTCGTTATTTTTAAAATG
AAGCACAACCGAAAAAAAAGGAAACTTCAGAAAGTTGCGTATTTCCAGTG
AGTAAACGATTCTGACAATTAACAAAATTGATGATGATGATTTTTTTCGG
TCAGGCAAATGTCTCGTATGGGGGTTCTAGTCTTGACCCCTAAGCCTACG
CGAGATTGAAGCGTTTGGGTAAACGAGTCAAAACTCCAAAAAAGCTGGTG
TTTTGAAGCGCTTCCGTGCTATCGAAATATCGCTGTTTGTGACGCACTGT
TGAGTCAATGTATTAAACATTCGAACATTCAAATTCGAACATTCGAACAT
CAGAGGTGCAAACTCTCACCCATGGGGTGTGAGACTCATGTATTTCCACA
TGGTCTCACGCAATTTTTGAAAAGTTTGATTTCTCACGCATTTTGGATTT
TTGAGAAAAATTTTCCGATTTTTGGAAAACGTTTTCTCGATTTCCCGAGT
TTCCAAAAAAAAGTTTCCCTGATTTCCCGATTTTTGTAAAAATGTTTACC
TGATTTTCCGATTTTTTCCAGGTAGTACCCAGTAGTAAATGGGGGTATGG
GGTGGTTTTGGTTTTTTTCCAGGGACTTCCTGGTAGTAAATAGGGGGTAT
GGGGTGGTTTTGGGATTTTTCCATGTAGTATGGTGTACTTCAGGGGTGGG
TGGGTGTAAAGTTTTGAAAAATACCTTGTAGTACACATACATGCTGCCTT
CTAGTACACTGACCCCCTACCTCCAAAGTCATTTGATTTGAGTTTAATGA
ACCGCGTACATGGTATCAGCCCCCCCAGAAATCTGAAGGGCACCTAGGCC
AGGTTAGTAGAGGGGGCTAATGCCTTGCAATTCTTTGGGGTTACCTATTC
ATTAAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCATCTTTATAGCATAACAACAAAGCTTAT
TAGCAGGCGTTCATGCGTGAGCATGATTTTAGGAATGACAAAAGAACAAA
AAGTGTCAATTCAAAGAAATTTATCTGCTGAATAGGGGGTACCTAACTCA
AAGCAATTTTTCAAGGGGACCTAACTCGTTGGGGGCACCATGCTTCATGG
GGGCACCTGAAAAGTGGGCTGAAACCATGGCGTATTAAAAAATGCACGAT
TTCTCTTTCGATTTTACAGTAAATGATAATACAGACCAGATATCAACAAG
TCCCATGTTGCGTACGCTCGTCCCAAGTTGGAGCAGTTGACGGTATCTGG
CCATGCGGTTGAAAGTCCAGGGATAGAAGAATTTGTTTCATTCCCCTGAA
CATTTGCCCCATATTGGCCGGGGCATGCATTGGTGTAGGAGGGCCAGTTT
TCAGAGCATGTCATGGTTGCCCCAAAGGAAAATTTCCAACATTAAAACTC
TGCCCCTAAGATCCGCTTCCCACCACATAAAAAGCCAGAAAAACAGGTAA
ATATAGCCAGTTTTCAATGATTTTGCCCCTGAACTGTGTATATTATTATC
AACATTTTGCCCCTGCCCTTGAAGAGGCCCCCCAGCAGACCCTCAATTCA
CGCAATCGCGCAATTCTTTTTCAAAATTCACGCATTCACTCAAATTTTCC
TCAAGTTTCACGCAATAACCCGATTTTTCAGTAATTGGAAAAATTTTTGG
GAAAAATCGGGGAAACATTGGAAAATCAGGAAAACTGCACATAGTAATTG
GTGGAAAAAAGGGAAAATTCACGTACCTTATTGGTATTATATTTTGCGTG
TTACAAAATTTCGCGGATATATACTGTATTTATTTCGCAATTTTTTTAGG
CCAAATTTTGCCAAATTTAATACCGTTTAAATTTTTCAACAATAAAAAAT
CGTGAAATTAAAAATACACACGAAAAATTTTCAAATAGGTCGAAAATCGA
AAATACTTATTTGTTACACTTAGTTACTATTTTTGTCAATAGTTTTGTTA
CTATATTTGGTATGTTTACACCTACGTTGTGTTTCAAGCGAAATAAGTCA
TTTTCTTGCCTTATTCCCACTTTTTGAGAATATGCCCAATTTAAATTTAA
TACACAAGAAAATTTCCAGAAACTGGCAATCGCAAAATTTAGTACACGCG
AAAAACGTTTCCTCGAAAAAATTTCACGAATCGCGAAATTTTGTAACACG
CGAAATATGATACCAATAAGGTATTCAAAATAGCCCAGATTCACGCATTC
ACGCAAGTTTTTTCAATTCACGTATTCACGCATTTCTTTTTCAATTTTCA
CGCATTCGCGCAACCGAAAATGCCCATTCACGCAACCGAAAATGCCCATT
CACGCAACCGAAAATGCCCATTCACGCAACCGAAAATGCCCATTCACGCA
ATCACGCAAACAGCTAGGGGGGCCCCTTAAAAAAAGGAGCAGTCTCTGCC
CTTGAGATCTCAATGATTTCTGCCATACTCTGAAAACTGGTAGGAGGGGA
GTGTAGGCAGGTGTGTAGGGGTCGTTATTGTCCTCTCAAGAGATTAATAC
CATAAACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACGGCAATT
CGGCCACCATTTCACCAAACCTCCAAAGTCATTTTATTTGAGTTAATGAA
CGACATATTAAAAAATACACAATTTCTCTTTTGCACCGAGTAGGCTTTTA
AATCGAAATATGAAAAAAATCCGTAGTGGAACACACGCAAGTGTCTGTGC
ACTCTAAGAGGAACGAAGAAGTATGATTGATAAACTTGGTGGAGTTATCA
AAACAAATTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAATACAGACCA
GATATCAGCCAGTCCCATGTTTCGACCAATCGTCCCAAGTTAGAGCAGTT
GACGGTAGTTGACTATGTTCCATTGGTTCGATTGATTTTCAATAACATTC
GATTTTGTTTGATTGAGATTATGTTCGATGAGTTTGATTGCGATTAAATT
AAATTAGATCACTCCTTTAAAGCTTTTTAGAGTGGGCGGCCGAGCGCTTA
AGTATCGCACGAAAGCAAATAAAATCCAAATCAATCGAACATAATTGAAT
ACAATCGAACGTAATTGAAGCAATCGAACGGCAAATCCTGGGTAATAATC
GATTGCGATTCGATTGTGTTTGACAATCGAATTGCAATTATTCGATTGGG
TTCAATTGCGTTCAATTGATTCAGCGTTCAATTCATTCGATTGACACCGT
CTGGAGACAGTAGTGCACTCTTGCACTCTCTTGGTGGCAGTGTATCCATC
ATACGTGCTGCTGATATGTGGGGTCTTCCTTGCTACTTTGCAGACCAGTA
CTGAATGATCTTTATTTGAACTCAATTTTTTGTAAAAAAATTACAGTATC
CAGGCGATTACTTAATCAAACAGAATTGACAATCGAACCAAATCAAATGC
AGTTAGTCTCCATCAGGATTAGAAACTAGGCTAGTCTTATATACCTCTTT
TATTTTAGGCGATTACTTAATCAAACAGAATTGACAATCGAACCAAATCA
AATGCAGTTAGTCTCCATCAGGATTAGAAACTAGGCTAGTCTTATATACC
TCTTTTATTTTTTCCTTTGCAACAATACAAGGTGACAAGTTGATACAACA
CATTGACCACTCCCTGTTAAGTTTGTATCGAAATCTGCAACAAAAACAAA
AGTGATCTCTTCTACTGATTGCTTTGTATTGTGGCGCTCCTTCGCGGAAT
GTTTATCAAATTTCATCACTTCCTGATCCAGTGGTGATTGCATGTACTGC
TACTTGTAAATACCAAAAATTACTTTCAATTCATTTTCTCATACAAAGAA
GAAAGTTTGCACAATCATCATGACAACCATCACATCATGAAAAAGATGGG
GTGTGGATACTCAAAGCTTCTATCAAAACAACACAAGTCTAGTACAAAGC
CCTTCGATGAAGATGCTATGAGAGATAGACATGTTTCAACAGAATCAAAG
GAAAATCCATCATCTCAAGGTATTATTTTGTTCACTATTTTGTTTTGTTC
AAATGTATCCGATGACAAAAATTTCAACTTAAACAGTAGCTTCATTTTTT
CTGTCTTATCTATCAATTTGCTACTTCTACATTTTAAATTTTCTCTCTGA
TATAAGATTAAGGATGACTTTACTTTCAAGAATCTGAATTTTTTATGAGA
CAAAGAGTAGTTTAAAATTTTGAAATGCTATGCTTTCTTTAGAGACATAG
GTTAAATTTGAAGTAAACATACCATTTTTAATAAACTTTAAAATGGGAAG
ATGTTCGAAAATTTAATGAATTTATTTAATGTTTTCAGGTCATCAAGATG
TCTCCAAAACTAGTAATCACTTTACAATACCAAGTATTGATGATTTACCA
CTAAACAAAGATAGTTGCATAACTATGCATGATTTGTACAATCTTTTAAA
TGATGGTGCTATGAAAATGTACATTCATGATCCATTTAACCTTTTGCTAA
TTGATGGTAGAGAACTGGATTTATATTCCACGCAACATGTCATAACAGCA
AAACATCATTCAATCTTTGGATCAGATAGCAATTTTGTTTTGAGACTTTC
AAATTATGGAATGGTGATTATTTATGGGTCAGAGCTGCAAGTGAATAAAT
CGTCAACTGATTCATTGTTAAAATTGCGGGCTGAAGTACAAGAATATGTA
GCAAGTGATGTTTTAGTGTTAGTGGAAGGTTTCGATCAATTTCATTTGAA
CTACCCCTTTCTATGCACTGATAAACTCATAGAAACAGTTGCTGATCGAA
AAGAGCTGCTGTGTTACCCATCTATGGTATTGGATTCTAAGCTTTTTCAA
GGGCGAGGTGACCAAGCTACCAATGAGAATATTATTGATGTTTTGAAAAT
TACTCACATTGTGAATATCACCTTGGAACATCAAAACGCTTTTCCAAAAA
AGGTTAAGTATTTCCGATTGGAACTAGACGATGTTGGGGAGTCAAACTTA
TTCGAACATTTCCATAAAACATCTGATTTTATAAATGAAGCACTTTCCAC
GAAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTGTTAGCCGAAGCT
CTACAATCACTTTAGCTTATCTCATGAAGTACAAACAATGGAGTCTGGAT
CTTGCGTTCAAAACCTTAAAATCCAGAAGATCTTGCGCTGCGCCTAATGA
TGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGATGCTGGGACAAA
AACTCACTGATATCGATTCCCTGTTTTAAGTTTCTGAAATTCTGAATTGG
GTGTAGTTTTGTCCCGTTAAATTCTAGAATTCTAGTTTAAAACACTTGCA
TCAGTTTGAAGTACTTGATTAGACTCTTCCTTTTCCTTTGTTTTATCTTT
TGTAGACGTATGGTCAAACCTAGTTTGTGTCGTAAAGCTGTAGTATTTGA
TCGGTTTGATTGGTTTTTATTAAAATTATAGTTTTGATACTTTTTCATAT
CTATTTAATAGAAAGTTTGTGAATAANGTCTATGGTATTGGATTCTAAGC
TTTTTCAAGGGCGAGGTGACCAAGCTACCAATGAGAATATTATTGATGTT
TTGAAAATTACTCACATTGTGAATATCACCTTGGAACATCAAAACGCTTT
TCCAAAAAAGGTTAAGTATTTCCGATTGGAACTAGACGATGTTGGGGAGT
CAAACTTATTCGAACATTTCCATAAAACATCTGATTTTATAAATGAAGCA
CTTTCCACGAAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTGTTAG
CCGAAGCTCTACAATCACTTTAGCTTATCTCATGAAGTACAAACAATGGA
GTCTGGATCTTGCGTTCAAAACCTTAAAATCCAGAAGATCTTGCGCTGCG
CCTAATGATGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGATGCT
GGGACAAAAACTCACTGATATCGATTCCCTGTTTTAAGTTTCTGAAATTC
TGAATTGGGTGTAGTTTTGTCCCGTTAAATTCTAGAATTCTAGTTTAAAA
CACTTGCATCAGTTTGAAGTACTTGATTAGACTCTTCCTTTTCCTTTGTT
TTATCTTTTGTAGACGTATGGTCAAACCTAGTTTGTGTCGTAAAGCTGTA
GTATTTGATCGGTTTGATTGGTTTTTATTAAAATTATAGTTTTGATACTT
TTTCATATCTATTTAATAGAAAGTTTGTGAATAACATTGAAGAATATTTT
GTAAGATATAATAGCTATTTATAATGAACATTGTGGCATAATTTATAATT
TTTAGATATTAATGATTTTTGTATATAAAAGAATGTTAATTCCTTGACAG
GTGATTGTTAGCTCTGGTGAAATATCAACTTCACTGAGAAACACTTTTGC
TTTGTTGAAGTCATAAAATAATTTACTCTTCACTCTTTCAAGCAACCAGA
GATTTAAAAACATTGGCTTTTGGTTTCCATTTATTTATTTAATAGTTTAG
ATTTATTATTTTCTGGTCTTAAATAGTTTTCACAAATTTTTATTTGTTTG
CTCTGGGTTAATCTTTCTAGCTTAGCGGGTGTTGCTCATTATTTCAATTT
TTAAGATATTAAATTATTTATAATAGTAGTGAGTATATGATTGAAAAGTC
TTTTAATCAAATATAACAATCCTTTGGCTTCTAATTTAGCTTTCGATGTT
ATCATTTTAGTCTTTTTATTTGGAGCTTTTCCTTTTTTAACTGCTCTAGT
TTTGACTG

Coding sequence (CDS) from alignment at sc0000041:383784..398641-

>TCONS_00004286 ID=TCONS_00004286|Name=TCONS_00004286|organism=Clytia hemisphaerica|type=CDS|length=2148bp|location=Sequence derived from alignment at sc0000041:383784..398641- (Clytia hemisphaerica)
GTCATCAAGATGTCTCCAAAACTAGTAATCACTTTACAATACCAAGTATT
GATGATTTACCACTAAACAAAGATAGTTGCATAACTATGCATGATTTGTA
CAATCTTTTAAATGATGGTGCTATGAAAATGTACATTCATGATCCATTTA
ACCTTTTGCTAATTGATGGTAGAGAACTGGATTTATATTCCACGCAACAT
GTCATAACAGCAAAACATCATTCAATCTTTGGATCAGATAGCAATTTTGT
TTTGAGACTTTCAAATTATGGAATGGTGATTATTTATGGGTCAGAGCTGC
AAGTGAATAAATCGTCAACTGATTCATTGTTAAAATTGCGGGCTGAAGTA
CAAGAATATGTAGCAAGTGATGTTTTAGTGTTAGTGGAAGGTTTCGATCA
ATTTCATTTGAACTACCCCTTTCTATGCACTGATAAACTCATAGAAACAG
TTGCTGATCGAAAAGAGCTGCTGTGTTACCCATCTATGGTATTGGATTCT
AAGCTTTTTCAAGGGCGAGGTGACCAAGCTACCAATGAGAATATTATTGA
TGTTTTGAAAATTACTCACATTGTGAATATCACCTTGGAACATCAAAACG
CTTTTCCAAAAAAGGTTAAGTATTTCCGATTGGAACTAGACGATGTTGGG
GAGTCAAACTTATTCGAACATTTCCATAAAACATCTGATTTTATAAATGA
AGCACTTTCCACGAAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTG
TTAGCCGAAGCTCTACAATCACTTTAGCTTATCTCATGAAGTACAAACAA
TGGAGTCTGGATCTTGCGTTCAAAACCTTAAAATCCAGAAGATCTTGCGC
TGCGCCTAATGATGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGA
TGCTGGGACAAAAACTCACTGATATCGATTCCCTGTTTTAAATGAAAAAG
ATGGGGTGTGGATACTCAAAGCTTCTATCAAAACAACACAAGTCTAGTAC
AAAGCCCTTCGATGAAGATGCTATGAGAGATAGACATGTTTCAACAGAAT
CAAAGGAAAATCCATCATCTCAAGGTCATCAAGATGTCTCCAAAACTAGT
AATCACTTTACAATACCAAGTATTGATGATTTACCACTAAACAAAGATAG
TTGCATAACTATGCATGATTTGTACAATCTTTTAAATGATGGTGCTATGA
AAATGTACATTCATGATCCATTTAACCTTTTGCTAATTGATGGTAGAGAA
CTGGATTTATATTCCACGCAACATGTCATAACAGCAAAACATCATTCAAT
CTTTGGATCAGATAGCAATTTTGTTTTGAGACTTTCAAATTATGGAATGG
TGATTATTTATGGGTCAGAGCTGCAAGTGAATAAATCGTCAACTGATTCA
TTGTTAAAATTGCGGGCTGAAGTACAAGAATATGTAGCAAGTGATGTTTT
AGTGTTAGTGGAAGGTTTCGATCAATTTCATTTGAACTACCCCTTTCTAT
GCACTGATAAACTCATAGAAACAGTTGCTGATCGAAAAGAGCTGCTGTGT
TACCCATCTATGGTATTGGATTCTAAGCTTTTTCAAGGGCGAGGTGACCA
AGCTACCAATGAGAATATTATTGATGTTTTGAAAATTACTCACATTGTGA
ATATCACCTTGGAACATCAAAACGCTTTTCCAAAAAAGGTTAAGTATTTC
CGATTGGAACTAGACGATGTTGGGGAGTCAAACTTATTCGAACATTTCCA
TAAAACATCTGATTTTATAAATGAAGCACTTTCCACGAAGATTGGTCGAG
TATTAGTTCATTGCAACATGGGTGTTAGCCGAAGCTCTACAATCACTTTA
GCTTATCTCATGAAGTACAAACAATGGAGTCTGGATCTTGCGTTCAAAAC
CTTAAAATCCAGAAGATCTTGCGCTGCGCCTAATGATGGTTTCTTGCAAC
AGCTCTCTAAGTGGGAAATAGAGATGCTGGGACAAAAACTCACTGATATC
GATTCCCTGTTTTAAATGAAAAAGATGGGGTGTGGATACTCAAAGCTTCT
ATCAAAACAACACAAGTCTAGTACAAAGCCCTTCGATGAAGATGCTATGA
GAGATAGACATGTTTCAACAGAATCAAAGGAAAATCCATCATCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002379XLOC_002379Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004286-proteinTCONS_00004286-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004286-exon-sc0000041-1575043694:398226..398641TCONS_00004286-exon-sc0000041-1575043694:398226..398641Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1575043694:386523..386693TCONS_00004286-exon-sc0000041-1575043694:386523..386693Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1575043694:383784..386203TCONS_00004286-exon-sc0000041-1575043694:383784..386203Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1510915933:398226..398641TCONS_00004286-exon-sc0000041-1510915933:398226..398641Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1510915933:386523..386693TCONS_00004286-exon-sc0000041-1510915933:386523..386693Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1510915933:383784..386203TCONS_00004286-exon-sc0000041-1510915933:383784..386203Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1491911889:398226..398641TCONS_00004286-exon-sc0000041-1491911889:398226..398641Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1491911889:386523..386693TCONS_00004286-exon-sc0000041-1491911889:386523..386693Clytia hemisphaericaexon
TCONS_00004286-exon-sc0000041-1491911889:383784..386203TCONS_00004286-exon-sc0000041-1491911889:383784..386203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:383784..398641 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.518622	2.0675	0	0	2.55393	1.62304	1.41116	1.22924	5.00715	4.10245	0.847939	2.43189	0.162258	0.317065	0.731	0.147749	0.225594	0.318408	0.392077	0.228633	0.343651	0.27476	1.07579	0.959038	2.02579	2.19162	1.03374e-07	0.10477	0.651287	0.719669
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020422TYR_PHOSPHATASE_DUAL_dom
IPR029021Prot-tyrosine_phosphatase-like
IPR000340Dual-sp_phosphatase_cat-dom
IPR001763Rhodanese-like_dom
IPR016130Tyr_Pase_AS
IPR000387TYR_PHOSPHATASE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008138protein tyrosine/serine/threonine phosphatase activity
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0016311dephosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Blast
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BLAST of TCONS_00004286 vs. Swiss-Prot (Human)
Match: DUS1 (Dual specificity protein phosphatase 1 OS=Homo sapiens GN=DUSP1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 6.899e-23
Identity = 74/257 (28.79%), Postives = 125/257 (48.64%), Query Frame = 2 
Query:  917 LKLRAEVQEYVASDVLVLVEGFDQFHLNYPFLCTDK---------LIETVADRKELLCY-----------PSMVLDSKLFQGRGDQATNENIIDVLKITHIVNITLEHQNAFPKKVKYFRLELDDVGESNLFEHFHKTSDFINEALSTKIGRVLVHCNMGVSRSSTITLAYLMKYKQWSLDLAFKTLKSRRSCAAPNDGFLQQLSKWEIEMLG---------QKLTDIDSLF*VSEILNWV*FCPVKF*NSSLKHLH 1600
            L   A  +E  A+ V  L  G++ F  + P LC+ +         L  +V D  E  C            P  +L   L+ G    A+ ++++D L IT ++N++    N F    +Y  + ++D  ++++   F++  DFI +++    GRV VHC  G+SRS+TI LAYLM+  +  LD AF+ +K RRS  +PN  F+ QL ++E ++L            +  +D     + + N+    PV   NS+L +L 
Sbjct:  104 LAAGALCREARAAQVFFLKGGYEAFSASCPELCSKQSTPMGLSLPLSTSVPDSAESGCSSCSTPLYDQGGPVEILP-FLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFI-DSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFPVSIPVHSTNSALSYLQ 358

HSP 2 Score: 94.7449 bits (234), Expect = 1.609e-20
Identity = 56/179 (31.28%), Postives = 98/179 (54.75%), Query Frame = 2 
Query: 1799 LFQGRGDQATNENIIDVLKITHIVNITLEHQNAFPKKVKYFRLELDDVGESNLFEHFHKTSDFINEALSTKIGRVLVHCNMGVSRSSTITLAYLMKYKQWSLDLAFKTLKSRRSCAAPNDGFLQQLSKWEIEMLG---------QKLTDIDSLF*VSEILNWV*FCPVKF*NSSLKHLH 2308
            L+ G    A+ ++++D L IT ++N++    N F    +Y  + ++D  ++++   F++  DFI +++    GRV VHC  G+SRS+TI LAYLM+  +  LD AF+ +K RRS  +PN  F+ QL ++E ++L            +  +D     + + N+    PV   NS+L +L 
Sbjct:  181 LYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFI-DSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFPVSIPVHSTNSALSYLQ 358
The following BLAST results are available for this feature:
BLAST of TCONS_00004286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS16.899e-2328.79Dual specificity protein phosphatase 1 OS=Homo sap... [more]
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