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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004270 ID=TCONS_00004270|Name=TCONS_00004270|organism=Clytia hemisphaerica|type=transcript|length=1983bpRun BLAST on NCBI protein sequence of TCONS_00004270-protein >TCONS_00004270-protein ID=TCONS_00004270-protein|Name=TCONS_00004270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp KIFFDNIRDDQEHNFEKQTEKKADTLNIQYDFSSVMHYGKFSFAQDPSKPRun BLAST on NCBI transcript from alignment at sc0000041:228493..234607- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004270 ID=TCONS_00004270|Name=TCONS_00004270|organism=Clytia hemisphaerica|type=transcript|length=6115bp|location=Sequence derived from alignment at sc0000041:228493..234607- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:228493..234607- >TCONS_00004270 ID=TCONS_00004270|Name=TCONS_00004270|organism=Clytia hemisphaerica|type=CDS|length=16368bp|location=Sequence derived from alignment at sc0000041:228493..234607- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004270 vs. Swiss-Prot (Human)
Match: MDGA1 (MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Homo sapiens GN=MDGA1 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 7.555e-31 Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 1
Query: 592 FIKPCNSGSLD---CTFDDDSDRLCGWTSEDSMNFQWTRNRGGTP----STSTGPSEDKT-SGSGYYMYIETSSPAREGWKARLTSSLIGAQV-VKCIKLSYHMYGASIGTLNIIAKDQTTN--EEHILFEKSGNQGNTWQTIEVTVQNSNPYKIVLEGVRGFDWQGDIAIDDIEFTNGACIKQ 1110
+ +P NS +L C F+D+ ++CG+T + + NF WTR T S +TGP D + + GYYM+IETS P G +ARL S L A C+ YHMYG IG+LN++ + + + H + SGN+GN WQ V + S P++I+ EGVRG + GDIAIDD+ G C ++
Sbjct: 739 YTEPINSPNLSDNTCHFEDE--KICGYTQDLTDNFDWTRQNALTQNPKRSPNTGPPTDISGTPEGYYMFIETSRPRELGDRARLVSPLYNASAKFYCVSFFYHMYGKHIGSLNLLVRSRNKGALDTHA-WSLSGNKGNVWQQAHVPISPSGPFQIIFEGVRGPGYLGDIAIDDVTLKKGECPRK 919 The following BLAST results are available for this feature:
BLAST of TCONS_00004270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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