TCONS_00004267 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004267
Unique Name	TCONS_00004267
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	941

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000041:177815..181262-

transcript sequence

>TCONS_00004267 ID=TCONS_00004267|Name=TCONS_00004267|organism=Clytia hemisphaerica|type=transcript|length=941bp
TAAGACCAGCCTTTTTTACACTTGGTACCCTAAAGGTACCATTTGATCGA
CCTGAAATTTATAGCACACCACCCCTCGTAGCAGTTAGTACCCTAGAAGT
ACCATTTGAttaagttaaatttcatattacACTACCCTTTACAGCAGTTA
GTACCCACAACGTACTAACTgcaaattccaaaaatcaaatatgacccacc
acggtactaaccgtcATGATGTCTGGTACCAACTGCATGACTCCCCCTCC
CCCCTGAGTACTAACGCTAAATCTACAAAAAAAATAGAGAAGAGAAACAT
TTCTACTGTTGGGATCGTGACAATTATTTAAAcgaaaaaatatcttttga
ataCTATCCTCAAGAGCAGTCTAGCGAattgtttattttgcttccttcaG
GTGTATTGGGAATTAAAGTAAAGATTATGTTNGTCCAATatttcttgtcc
agaagatttaaaCATCATTGTTTGCAGTATCTCATAAAATATCACCCTAG
TAATGTTGCTTAGTTATTTAAGAATCAACAAGTTAGGCTGTTAGTGTGCA
CAAATATAGAGACTTCAAAcccccactgagattttttgaggtcataaact
agacctactaaggaagcattactgaaagtttcaaaaaaatttgtagggCN
GAGCCCAAAGAAGAAATCTTACCTTCTGGTCCAACATCTGAACAAGTTGG
TGGTAAACCAGATGTTGCTGCAGCTGCTGCCCCACCACAGacacaacagc
aacaacaacaaccaactCAACCACCTCAACAACCAGCACCTGTGGCTTAG
ATATCGCCTGACCAATGGAAGTCGTCTAAGGACATACATCGCCTTATCAA
CCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACAACTCCTGACCATC
TCAtactttcaatgaaaaatatttgaaagaacaAAGTTCAC

Run BLAST on NCBI

transcript from alignment at sc0000041:177815..181262-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004267 ID=TCONS_00004267|Name=TCONS_00004267|organism=Clytia hemisphaerica|type=transcript|length=3448bp|location=Sequence derived from alignment at sc0000041:177815..181262- (Clytia hemisphaerica)
TAAGACCAGCCTTTTTTACACTTGGTACCCTAAAGGTACCATTTGATCGA
CCTGAAATTTATAGCACACCACCCCTCGTAGCAGTTAGTACCCTAGAAGT
ACCATTTGATTAAGTTAAATTTCATATTACACTACCCTTTACAGCAGTTA
GTACCCACAACGTACTAACTGCAAATTCCAAAAATCAAATATGACCCACC
ACGGTACTAACCGTCATGATGTCTGGTACCAACTGCATGACTCCCCCTCC
CCCCTGAGTACTAACGCTAAATCTACAAAAAAAATAGAGAAGAGAAACAT
TTCTACTGTTGGGATCGTGACAATTATTTAAACGAAAAAATATCTTTTGA
ATACTATCCTCAAGAGCAGTCTAGCGAATTGTTTATTTTGCTTCCTTCAG
GTGTATTGGGAATTAAAGTAAAGATTATGTTNGTCCAATATTTCTTGTCC
AGAAGATTTAAACATCATTGTTTGCAGTATCTCATAAAATATCACCCTAG
TAATGTTGCTTAGTTATTTAAGAATCAACAAGTTAGGCTGTTAGTGTGCA
CAAATATAGAGACTTCAAACCCCCACTGAGATTTTTTGAGGTCATAAACT
AGACCTACTAAGGAAGCATTACTGAAAGTTTCAAAAAAATTTGTAGGGCN
GAGCCCAAAGAAGAAATCTTACCTTCTGGTCCAACATCTGAACAAGTTGG
TGGTAAACCAGATGTTGCTGCAGCTGCTGCCCCACCACAGACACAACAGC
AACAACAACAACCAACTCAACCACCTCAACAACCAGCACCTGTGTGAGTG
TACCTAATTAACTTTGGTTACATGTAGGAAAATTTTGGGACCCTCTAACG
AGAGTGAACTAACTGGGTAATCAAAGTTAAGAGCCATTTTTTTTAAGAGT
CTTCAGGGTGTGATACCTCATCATCTTGGATTTTGATGAAATTTTGACCA
AATGATCCATCACACAAGAAAATAAGACCCTGAAAATTTCACCTTGATAT
CTCACGTAGTTTTGAAGATACAGCGNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNCAGAGAAATTTTTGGAGGCAGGGTGGGGAAAAATGAGGGGGGG
AATGGAAAATTTTCATTCTAGGCATGGGGGGGAAGAGACCCTGAAGGACA
CTATGAATCTATTGATACATGTTTTGACAAATGATATTTTTCTCTTTCAG
GGCTTAGATATCGCCTGACCAATGGAAGTCGTCTAAGGACATACATCGCC
TTATCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACAACTCCT
GACCATCTCATACTTTCAATGAAAAATATTTGAAAGAACAAAGTTCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002370	XLOC_002370	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004267-exon-sc0000041-1575043694:180470..181262	TCONS_00004267-exon-sc0000041-1575043694:180470..181262	Clytia hemisphaerica	exon
TCONS_00004267-exon-sc0000041-1575043694:177815..177962	TCONS_00004267-exon-sc0000041-1575043694:177815..177962	Clytia hemisphaerica	exon
TCONS_00004267-exon-sc0000041-1510915933:180470..181262	TCONS_00004267-exon-sc0000041-1510915933:180470..181262	Clytia hemisphaerica	exon
TCONS_00004267-exon-sc0000041-1510915933:177815..177962	TCONS_00004267-exon-sc0000041-1510915933:177815..177962	Clytia hemisphaerica	exon
TCONS_00004267-exon-sc0000041-1491911889:180470..181262	TCONS_00004267-exon-sc0000041-1491911889:180470..181262	Clytia hemisphaerica	exon
TCONS_00004267-exon-sc0000041-1491911889:177815..177962	TCONS_00004267-exon-sc0000041-1491911889:177815..177962	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041	supercontig	sc0000041:177815..181262 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.0665	60.8385	67.6288	66.6128	76.3549	60.6909	99.9275	98.976	194.936	193.511	209.377	232.476	314.801	322.282	229.503	228.427	270.878	261.053	155.192	168.956	113.44	114.599	90.0458	84.0205	131.587	137.239	109.444	115.647	69.6982	70.7661

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004267 vs. Swiss-Prot (Human)

BLAST of TCONS_00004267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00004267 (transcript) - C. hemisphaerica