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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004259 ID=TCONS_00004259|Name=TCONS_00004259|organism=Clytia hemisphaerica|type=transcript|length=1836bp
aaatgtaTCTATATCCACTTTGGTTCTTATGTATCTGTCaattttattcc
tttttctGCTAGTTGACATTCACGCCTTTGATATTCATAATTATGCATTT
CATTTTGCTAGGTATTTGTCAATAGCATTACGTCATTTCTGATCGTTCTC
GTTCCGCTGACAGTGGCAGGCGCCATCTTGAGCGTCATCATCACCAGTGT
GGTCACAAAAACTGTGCCTGGTGAGGATACAGGCGCTGCCTTAGGTTTAC
TAATGGCAACACATTCCTTGATAAGGACCGTTTCACCTACTATCGGAGGC
TTTTTGTACGGCTATTTGGGATTTCCAGTTTTCGGTGTAGTTGGGGCCTT
AGTAAATGGAGGACTGgctttttatttgtttaattATGGCAAAGATACGA
TCATGAAAAAGGGGGATTCTTGAACTGGGAAAACTCGTAAAACTGGATTC
TTGATTCGACCAATCTGACAGAATCTGTAAGAATTTTTCGggtttattat
atatttttactattatattaaatttcttttatatGATCTGAATTTAGGAT
AATCATCTTTTTTTAGAATATTCTCAGATAAAACTTTTAGAGAAATTCGT
GCCATTTTCAGACACTTTAAAGACAGGTTTTTAGCAAAATTTTTGATCGC
AATTGATATGATAcctaagttgttttttttaaaccaaaaaaaaCGTCCTA
ATCGTCAAATTTTCATAGATTTGAAAGCATCATTTTATGTCAATTTTATC
ACATTTTTATATGGATAGAAAATATGcttatttttaaattcaagtATTTA
TTTATCATAATTGAAAGTCATTAGTTTTGTAGTTATTTAAttagtatttt
tgtttttttatcaggTGGGAATTTAAGGGCTTAagggttttgttttcaaa
taagacTGATTTTGTTTGCccactcatcaattttgattcatAAGTTTTTT
CACactgaattgacacggatgtggagcaagatcggTCAAAAAGAGGAAGA
GAAAAACAGTTTTCGTTCATATCAGCGCAATATAGCAATAGGGAGACATC
GTCCTAATATgagatatgtgtctgatatgaaacgtcGCCGTTCACTTATG
TgttctagcaagctagacgactaataaTTCAGACAtaatagaaataaagc
aaaaaagtaatggagggaacaactTTAGTAATTTTAGTTTAtgcaaacta
aatcccgtaacaataacaataatcgtattattatcatataacgcctataa
tTCTGTATTGCACGCATTatgaacgactccagtctattacggtgaaaact
agtttcgatcagcaattccgccccttcaatttttttcgttctttctagtc
cgtggtaattttccgggggtcaggattcgattatcagttagggtcagggt
tgcaaGTAACGGCTTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNaagtaacggcttgtcactgtgccgggtgcatactcggcgcctt
gggccccgcagggttgctagtaacggcttgtcactgtgccgggtgcatac
tcggcgccttgggccccgcagggttgctagtaacggctcgaattgcAGAC
AGTGAAATCTTTTCACAGGAGCGAGGATATGTTTTTGTGTCATTTGCATT
TTCTGCGGGAATCAAATTTCGTCATGTTTCAATTTGATGCTTCAAGAGGG
GTAAATTATTGAGAaagttttttctggaagagcatATTTTCACCACAATa
gggttttattttatttaagtaCGAAATaggtgaaaattatattttgatat
tcttGAAGGTAGAAGCAATGTAATATACAATACTGG Run BLAST on NCBI transcript from alignment at sc0000041:725066..727586+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004259 ID=TCONS_00004259|Name=TCONS_00004259|organism=Clytia hemisphaerica|type=transcript|length=2521bp|location=Sequence derived from alignment at sc0000041:725066..727586+ (Clytia hemisphaerica)
aaatgtaTCTATATCCACTTTGGTTCTTATGTATCTGTCaattttattcc
tttttctGCTAGTTGACATTCACGCCTTTGATATTCATAATTATGCATTT
CATTTTGCTAGGTATTTGTCAATAGCATTACGTCATTTCTGATCGTTCTC
GTTCCGCTGACAGTGGCAGGCGCCATCTTGAGCGTCATCATCACCAGTGT
GGTCACAAAAACTGTGCCTGGTGAGGATACAGGCGCTGCCTTAGGTAAGA
AAGTgttaaatgaatgaatgagtgaatgaatgaatgaatgaaaaatgttt
gattggtttaacaaaaaattgtttgagtTTTTCCAGGAGAGCGATTTTTA
ATTAAGTTATTTtctgaatagaccttttcataaagtacgtcacgaacatc
acttgcctcgtattcaaacaattaccatggtgattatatcccttgagaca
ttaaatgatattttatgaatagaaagtagttttaataaaatccgctggga
gttaatcaccatggcaataatttcaaaacgaggcaagtgatgtttgtgac
gtaatttattaaAAGGTCTATCTATCAAGAGATCGTGATGTTGACAGCAT
GTTGACAGGTGCTAATTAAGGTGTGGATTAAGTATTCAAGGATATTTTAT
TGGTTTTATTATAATAGCGAATTTTTTGTATGTGTTTTTCGGCGACTGAG
ACGGTTAGTttctgatttgtctagatccgGACTGACTGAGGGCGACGGTA
AATCTGCACTTTTATCGTCcttgattttgcgggtcaaaactgcgggttat
tccaaaacgcttcagtcactctaccgtcctcaaaagtgcaaatgcATAAA
CTCGCTATCGTCTATTTCATGCCcagttttttaattgaaagacaTCAGAT
TgctaatatcttttcaacatttATTACAGGTTTACTAATGGCAACACATT
CCTTGATAAGGACCGTTTCACCTACTATCGGAGGCTTTTTGTACGGCTAT
TTGGGATTTCCAGTTTTCGGTGTAGTTGGGGCCTTAGTAAATGGAGGACT
GgctttttatttgtttaattATGGCAAAGATACGATCATGAAAAAGGGGG
ATTCTTGAACTGGGAAAACTCGTAAAACTGGATTCTTGATTCGACCAATC
TGACAGAATCTGTAAGAATTTTTCGggtttattatatatttttactatta
tattaaatttcttttatatGATCTGAATTTAGGATAATCATCTTTTTTTA
GAATATTCTCAGATAAAACTTTTAGAGAAATTCGTGCCATTTTCAGACAC
TTTAAAGACAGGTTTTTAGCAAAATTTTTGATCGCAATTGATATGATAcc
taagttgttttttttaaaccaaaaaaaaCGTCCTAATCGTCAAATTTTCA
TAGATTTGAAAGCATCATTTTATGTCAATTTTATCACATTTTTATATGGA
TAGAAAATATGcttatttttaaattcaagtATTTATTTATCATAATTGAA
AGTCATTAGTTTTGTAGTTATTTAAttagtatttttgtttttttatcagg
TGGGAATTTAAGGGCTTAagggttttgttttcaaataagacTGATTTTGT
TTGCccactcatcaattttgattcatAAGTTTTTTCACactgaattgaca
cggatgtggagcaagatcggTCAAAAAGAGGAAGAGAAAAACAGTTTTCG
TTCATATCAGCGCAATATAGCAATAGGGAGACATCGTCCTAATATgagat
atgtgtctgatatgaaacgtcGCCGTTCACTTATGTgttctagcaagcta
gacgactaataaTTCAGACAtaatagaaataaagcaaaaaagtaatggag
ggaacaactTTAGTAATTTTAGTTTAtgcaaactaaatcccgtaacaata
acaataatcgtattattatcatataacgcctataatTCTGTATTGCACGC
ATTatgaacgactccagtctattacggtgaaaactagtttcgatcagcaa
ttccgccccttcaatttttttcgttctttctagtccgtggtaattttccg
ggggtcaggattcgattatcagttagggtcagggttgcaaGTAACGGCTT
GTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagtaacg
gcttgtcactgtgccgggtgcatactcggcgccttgggccccgcagggtt
gctagtaacggcttgtcactgtgccgggtgcatactcggcgccttgggcc
ccgcagggttgctagtaacggctcgaattgcAGACAGTGAAATCTTTTCA
CAGGAGCGAGGATATGTTTTTGTGTCATTTGCATTTTCTGCGGGAATCAA
ATTTCGTCATGTTTCAATTTGATGCTTCAAGAGGGGTAAATTATTGAGAa
agttttttctggaagagcatATTTTCACCACAATagggttttattttatt
taagtaCGAAATaggtgaaaattatattttgatattcttGAAGGTAGAAG
CAATGTAATATACAATACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004259-exon-sc0000041-1491911889:725066..725309 | TCONS_00004259-exon-sc0000041-1491911889:725066..725309 | Clytia hemisphaerica | exon |
| TCONS_00004259-exon-sc0000041-1510915933:725066..725309 | TCONS_00004259-exon-sc0000041-1510915933:725066..725309 | Clytia hemisphaerica | exon |
| TCONS_00004259-exon-sc0000041-1575043694:725066..725309 | TCONS_00004259-exon-sc0000041-1575043694:725066..725309 | Clytia hemisphaerica | exon |
| TCONS_00004259-exon-sc0000041-1491911889:725995..727586 | TCONS_00004259-exon-sc0000041-1491911889:725995..727586 | Clytia hemisphaerica | exon |
| TCONS_00004259-exon-sc0000041-1510915933:725995..727586 | TCONS_00004259-exon-sc0000041-1510915933:725995..727586 | Clytia hemisphaerica | exon |
| TCONS_00004259-exon-sc0000041-1575043694:725995..727586 | TCONS_00004259-exon-sc0000041-1575043694:725995..727586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:725066..727586 + |
Blast
The following BLAST results are available for this feature:
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