TCONS_00004258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004258
Unique NameTCONS_00004258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004258 ID=TCONS_00004258|Name=TCONS_00004258|organism=Clytia hemisphaerica|type=transcript|length=837bp
cagatgaaataaaaagagaaaaaaatcacaatcagAAACACatgaaaaca
caacaaaatgATGCGTAAAAGCagacaagaagaagaagaagaaaagaaaa
ctgAAGAAGAATCAACAATAgaatcaatttctttttcatctaCAGACAAA
AATATGTTTGGCTTAAACAAGAAAACGTTTGTCATGTACATGACGCATTT
TAATATTGTGCTTTATGCGTTATGTTATTGGATACAAATTGGAGTATTAC
CGTATTTGACCAGAAAACTTGGTGTGGACACACAAACATTTGGTATACTA
CAATCAACATTCGCTTTTGTTCAACTTTGTGGTGGGCCTGTCTACGGGCG
TTTTGGCGATTTATTTGGTGGCAAATACTCCCTGATATTAGCCTTCTTTG
CATGTTTCACAAGTTATGGATTATTAGCTGTTGCAGCGAGTATTCCGGTC
CTGTTTTTATCACGCTTACCGTCAATTGCTATGCATTGTATGCAAGGTTC
ACAGATGGTCCTAACAGACATCACTTCTGACAATGAACGCGCAAGTGCTA
TTGGTCGTCTCGGTGTATCTTACGGCGTTGGCATGGTGATCGGCCCACTC
ATGGGTGGGTTTATTACCGACCGCTTTTCAGAGCAGACGGCCGCCGCAAC
GGCCGCTTTCGGTTCCATTGTCAGTATTGTATTGGTGGTTTTATTCATAC
CGGCAAACACAAAACTCATTAAAGAGGTTGACGAAAAGACAGAGATTAAA
GTGGCATCCGGTGCCGTGTTCGATTTCAAGAAATATTCATCAATCTTCGC
CGCTCCAAACTTCTTGTATGTGTTCATGATCAAAGNC
Run BLAST on NCBI

protein sequence of TCONS_00004258-protein

>TCONS_00004258-protein ID=TCONS_00004258-protein|Name=TCONS_00004258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MMRKSRQEEEEEKKTEEESTIESISFSSTDKNMFGLNKKTFVMYMTHFNI
VLYALCYWIQIGVLPYLTRKLGVDTQTFGILQSTFAFVQLCGGPVYGRFG
DLFGGKYSLILAFFACFTSYGLLAVAASIPVLFLSRLPSIAMHCMQGSQM
VLTDITSDNERASAIGRLGVSYGVGMVIGPLMGGFITDRFSEQTAAATAA
FGSIVSIVLVVLFIPANTKLIKEVDEKTEIKVASGAVFDFKKYSSIFAAP
NFLYVFMIKX
Run BLAST on NCBI

transcript from alignment at sc0000041:714915..724637+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004258 ID=TCONS_00004258|Name=TCONS_00004258|organism=Clytia hemisphaerica|type=transcript|length=9723bp|location=Sequence derived from alignment at sc0000041:714915..724637+ (Clytia hemisphaerica)
cagatgaaataaaaagagaaaaaaatcacaatcagAAACACatgaaaaca
caacaaaatgATGCGTAAAAGCagacaagaagaagaagaagaaaagaaaa
ctgAAGAAGAATCAACAATAgaatcaatttctttttcatctaCAGACAAA
AATATGTTTGGCTTAAACAAGAAAACGTTTGTCATGTACATGACGCATTT
TAATATTGTGCTTTATGCGTTATGTTATTGGATACAAATTGGAGTATTAC
CGGTATGTTGATGTGTCTTtcagtttttataagaaccagtacacacgata
cgtcactttttcaattgtttaagtgacgtattgggtggaacattttaaaa
gttctcagaagactttccagtggtgcatatcatgaatacaaagCTTAGTG
TTTATAACATAACTTGTGTTTCTTTCTCTCAGTATTTGACCAGAAAACTT
GGTGTGGACACACAAACATTTGGTATACTACAATCAACATTCGCTTTTGT
TCAACTTTGTGGTGGGCCTGTCTACGGGCGTTTTGGCGATTTATTTGGTG
GCAAATACTCCCTGATATTAGCCTTCTTTGCATGTTTCACAAGTTATGGA
TTATTAGCTGTTGCAGCGAGTATTCCGGTCCTGTTTTTATCACGCTTACC
GTCAATTGCTATGCATTGTATGCAAGGTAAGGATaaaaattgaatctcaa
tcaatTATCACTTATTTATGGCCTTCATGTTTCAAATTAattcttttaaa
acaaaacGCTAAGATTTCGAAAAGTCTATTCGACTCTTTTTTGCAGCGAA
TGGGAAATTGTCAttcattttaaaagaaaagtttatatttttcatCTGCA
GGTTCACAGATGGTCCTAACAGACATCACTTCTGACAATGGTAAGGTCAT
CTTATTCTGTATGTCATtagactttttccaaaaaaaattgtgcaGCCCTA
GTCCCTTACTCCCATTTTTGATGGTTCTTATAGCGCTTGTAGCACCTATA
GCACTTGTTTATGTCCAGTGTAATCAAGAAGTGATGCAAGTGACTCCCGG
GGGgtgggggcactgaccttgacggccaaTGGGAACGttccgctggagtt
tgaaaaatggaccctgtcagatatgaatatttggcaaatttgagaaaaat
cgaatttctttgacaaaaatttcaaaattttttctttttgaaaattttga
aattttcttgtgGTACTATATCGAATTTCCTAAGGTGGAAATGTATTTCC
TAAAtgggggtcttgacccctctagagaCTAAcgtccaaatttttttttc
tctttacagAACGCGCAAGTGCTATTGGTCGTCTCGGTGTATCTTACGGC
GTTGGCATGGTGATCGGCCCACTCATGGGTGGGTTTATTACCGACCGCTT
TTCAGAGCAGACGGCCGCCGCAACGGCCGCTTTCGGTTCCATTGTCAGTA
TTGTATTGGTGGTTTTATTCATACCGGCAAACACAAAACTCATTAAAGAG
GTTGACGAAAAGACAGAGATTAAAGGTTTGTTGATGTACGCAATATTTTG
AGTAGTCTTTACAAAAAATTCCCATGCTAGAAGCCAAGGCTAGGCGCTAG
CTTTCGTATTTTCTCAGTCTCCTTAAAATGTCTCCTTGTGGTTTTCAGTA
TAATTTGTGAACCGGTTTTTGTTtgatgggctattccagaaatagtctgt
atcccctatgttgaggaggtgtgacgtccagggtggtctggaaaataaaa
aatgcaggGTGGTCGGTAAAATTGGATAGAAAATCCAGTGTGGTCAGTAT
AACGAgctcgaaaatccagggtggttcaAAAAATGGGAGAAATAAATCCA
AGGGgtcctgaaaaataaagaaaaaatccagggggaacgtctttttgaaa
aaagacctcctcaacatagggggtacaatttttttctggaatagcccatt
gttGCTTAGCTAaatttcgttttcagcctcaaaTTATGCTTGGTCAcatc
aacgatgtaaaaataatagataaccaacttgccttgattctcaaaaaaca
cccgtgttacggttgtaaaaatattaatgacattttgcatcgtaaaaagt
gcaattaattaaaaacttgcttcatttgcaaccttctattggacagaatc
gatcacgtgatgtatatttttccaaaatttgggttagaaaaagtgtattt
tcctataggcagcctcacagaaggaattttttaattagatattattgttc
tataaacattcatctatttattttgtatcaggtaaccttcatgcactttt
cattcgtgagatatcgcacttcaaatcacacatatatttttcagataaca
gcattttatgagcgtttatttatccagatgaagattaagtggtatcaggc
cgatccgtagtcaatttgtctaaagattggtacctttatcttttgaaaat
aattccaaaatttgcagtataaataacaattcaaattttctatcaattca
gtggatgtcaaaaagtgtgtcaaaatctagctaaaagcataacacgcNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNacaatggttgttctcttgggagaagtgccttctaga
ggtagttggttatctattatttttacatcgttggtcaCATACTTACTCGA
AAGCAAcatattcttacgttttttattttagaattaTTCGTTGTCTCCCT
CCCTATCTCATCGATCCcattttcaaactaaaatttgaatGATGAATTTT
ACCAGCTTTGAGCTATGCTTTTGCACTGTGCctattttattgcaaaattt
gcGCCTttctatgcttataaacgttatggtTCTATAAGAAAAAGAGTGAA
CTGAAATCCTCCATGATCTTATTAAACTTCTTAGATTTCTAAGAGTTTCT
ACGAattcattttaaaaaatattcttgtTTCCGCGTTTACTGGGAAATTT
TTATCAACATTTCGATTTGGCGTATTTCAATTTATAGCTCAGGTGTCAGA
CGTAATCTgtaactacaatcatggacaaaattatCTGAGACAAAGCGGAT
TTTcctgtgaaattttaaacaccacaaatgatttttaagcgcgttaaact
acagttggaaagtagagttttaactctgagttttaacataagaCTTAAAG
TCTtgggaccttaggatctgaggatttaaaagctcaattaatttgctcca
ataaggtTTGGAACATAGCCTAAAAACCaccgaacccctccaaaatcgaa
atattcaatgaaaaaaagtggaagtactaaaatagcaattctcgcccgaa
ttttagagattctgaaaaacgttaaaattcactaaaatctcaatatgtat
cgaccatgattgtagtcaTACAGATGCCTGATTGCAAACAGCTCTCGATG
TGCCTCGCTTTGACGCTTCCAATCAGATTTAAAGAATGTGTTTTTCGTCA
AATACgtgaaattcacttttttgttgTTCTGATTAAACCAGAAGGATTGT
GAAGGTTTCTAGTTGCTCTTGGAAATAGTACAAAATGTTATTTAGCCTTT
GATAACGACACATTCTTATTGAATTGGGCATTGGAAAAGTCTTCggcaaa
gaaaaacatgtttttaccgagtgaaaaaaagttagagcTTAGAACATATT
TACAATGCTGCAACAAATGCCCTAAATAAAAAGATTAATGACGACCGCAT
GATCCCCGATGATGATGGTCTTTCAATTATTAACCAACGAGTCTTCGGCA
AGACTGATGTAATTAAAAATAACGCCCTATTTAAGTTATCTTAAATTATG
ATAACTTTGAGCGAGCTTTACGTGTAGAAATTTCAAAGAGTGCACGGTTC
AAATATTCTCGTGTATTTCTCTTCGGTTTTAAAAGTATGATGTAAAGTTT
GCTgccataaaatatcaaaacaaataacAAATTAGCAATGGTTATAATCA
ACACACGAGCAACTATTTTGATGTCTTTGTCTTGCTTAAGAAATTGGAAT
GGAAAATAGGTCATGTATGTCATGATACTTGTAAACGATGAATAAACGAT
TGGCATTGCTTCATTGAAAGGTCCTGGAAGATTACGACCACGATAAGCTT
GGACAGTTGAGATCAAATGTAAAGCTATGACCAAAATGATTTGAATATTG
TAGTGTGAATGAGTCTTGCATCGGTATATTTTCTTATATTCAGAATGGTC
GAATTCAAGCTCTGTGTTGACTTCACTGTATACAGTACTCATTGCCAACG
CTGAGGAGTCGACCATTAACAAGACCGACACcagaaatatttgagaaatc
aaaatatttcttttctgcTTTTTATTCAAACGAAGTTTCGAATTGAAGGC
TAATAAAAGACTTTGACATTTAATGAAAATCAATGTGTATGGCGAAAACA
CCAGCATTGAAGTGACCAACAGCTCCATCAAACATGTCTCTGGTGTTGTT
CTGAAGATTGTAAATTGCAAAGGGATGAAGAGAAATAACAATACCATTGA
AAGTCCATGGACGAGCATGATGTTGAAATTTGATCCTAACACGATCACTG
TTTTCCTATATCTTACGAAAACCACCATTGAGAAGAatgtaaaaataatt
ccaatACAGCAAAATGTGATCATGATTTTTAATCCAGTCTGGTTGTGGAA
TGTTAAATATTGGTCAATGTAAGGGTCATAACAAGCATTTCTCTTTTCGG
TGGAAAGTGTCAGCTTTGGACATTGTGAACAGAAACTGTGTAGTTTTGTA
TCATTGGGTTGAAAGTGATTGACAGGACATTGCCGACAGCTCCATCCAAT
AGAATCATTGCTCCATATTCCAAGCCTGTCTTTAGGAAGTGTACCAAAGT
AGTTCCCAGTGCCTTTTTGGCAACGAACGATTGAGCATGATTTTAACTCT
TCTTTATGCTTTAATAATCGGTTTGTTCCTGGGATAAACTTGAAACTCGT
TTTGTAATCTTTTGTGAACGAGAATCGAACCATATATGGATCTCTCATTT
CGTTTGACGTCATTCGTGTTCGTTTTATCAACCCTCTTTTGAATCTGTCG
AAACCTAATGGTAACCAACCttggaaatttttaataatttgaattaattt
taTGAAATGGTTTTCAAATGCACTCATACAATTATAAACAGTCATTCTCT
TATTTCTTGTCAAGCGTGTCAAGTTAAAGTGTTGAGTAATGTGTAAAAAA
ACACCCTCCATATCAATGGGTTTGGCTTTCTTTTTAAAAGTCTGTATTTC
AAATTCGTTGATTCCGATACTAGGTTCATGGCCTTTTGGCATATTTTCTT
GGTGTAAGTCCAATACccaaaaaaattgagttttaactttttttgttatG
TTGTTTATTGTCATATAGTtggtaagatgttgtagaaatttTACACTGTC
TCTTGGCCTTCCGATGAGTACTGATAAGTGAGTGTCCTCAATTGAAGCGA
TATACTCAAAAACTGGATCAGTGCTAATGTTGGTAGCTGTTACATTTAAA
TGATAAAATCTGGGACacaattttaacattttggctttCTTGTCTAAGAT
ATTCTTAAAGGTGTTATATTCCAAATTGTATAAAAGTGACCGGCTCTCCA
AATATATAACTGCGAAATTTCGGATTTGTTCTAGACTAGCTGTCGGACGT
CGTCCACCTAAGTTATTGAAGCTTGTTGCTGTTTGATTGTTGATTAAGAA
GAGTAGATTTCGTGCGTTTACATCAAAAGCTCCTCCGTTACTGTGTATAT
TTTGTTCGCTGACGTCGTTCGAGATTCGTACTTCGGTATTTACCAACCAA
ACAACGAAGTCATCAGCCAAAAAGATTCCTtgtaataattttgaaatttc
ttttgatgCGTGTATGATAACTAGTAAAATTCTTGAAGTGTGTTCCCAAG
ATATGATGGTCCTTTTGTTCCATTGGGGAGGGTCGTGTGTTTTATTGGAT
ACAAAATAACTCTGGTTTAGTTTCAAGTTCATTGCAATTCTAGATGCTTC
GTctgattgacaaaaatttattaCTTGATATTCAAAATCATTCATGGTTA
GCAAGCCATCCATTCTATCGAATTCCCTTTCTCTTATGAATTCATTCCAA
TTCAATTTCTTGTTTTGATAAGCAAATTCAACAGTAGTTTGACAAATATT
CGATTGAGTTATATTCACATCTCCTGGACATTGTTGATAAAGTCCAACAA
TGATCATTGGTTCATTTCCTGGTCCCAATGTTCTCGATAATAAAATCTCA
CACATGCAAAATGCGAACAAGAATGCAAGTAATGTTAGCAGACCCATTCT
TCAAGCTTTCACACAAAGTAAAATATAGTTGCTGATCCCAGACTTGAATA
AAACTTGTTATGTATAAACTTAAGGTTAAAATATGAATCAGTTATAGCTC
TAAGCTCTAGGGCTTCCTTTTGGAGAGTGTTTTAAGTACTGAGCGAGGTG
ATAGATATGACATTTTAAAATTCGCCCCTTCACCAAACACTTACTATAGT
TTTCATCTTGATTCTTCTATCCTACATATAAAGTTTAATTGTTAATGAAA
CCctcaaataaagaaaatactttttattttttaacaggacttttaaaagt
gaaaaatgacaGAGAtgtactttttataagaacattttcatgATTCAAAA
CGGTTCTTAATATTGGCGTGAATTTAATACATAAAATCTGAGCCTCAAGT
TTTAGGTATTCTTAAGATTGTTATGTACTTCTAAGACaacaattcttgat
atgcgtaagtcatttttctagtggaaacacccgaaaaaagccgggatttg
accccctctctgttactaaaaatagaaacacggaggtcaaaatccggctt
ttttTGAGTGCTTCCGttgaaaatatgacgtcatcttgacttactcAAGA
ATAAGTTGCTTTTTGGTTTAAAACAAATGTGACTAGGATCTACTGTTTGT
GTTTGTGACtgaattttgttttgttatgaTTGTTTCGCACTTCAAACTTC
CTTATTGATATTCATCCAAAATCTTGTGGATAATCAAAGCGGCCCATCAA
CCTGGGCAGATCTCTTACTGTGCTATAGCTTTTACGTGTCATGCGTGGAA
TAATCGGAATATTCTCGGAGATTAGTATACTGCATACTGCATACTTATGT
AGACCTAAAAAGCACAAGGACATGCACTCTCGCAATCTTTTATTTCGATT
CATCAATCGTTGATGTAAAATTTTAGTGCTAATAAAACTGTTTTTGCCGA
AAGGACTTCAAAGACTAACCTTCATAAAAGTACATGTTTCAGGCTCAggt
ttatgaattttttttgtcaataactAAATATGTACCGGCAAACTTTACAA
TCGAAAGCTATCTTAATTACAAGTTTTAATAACACAGAAATTAAAATAGA
AACCGTACATTTCtaattcttgatttttgttATAATAAAGATTCATCATA
TGAGGGAGTTAATCTtgcatttactaaaaatagacaaaaagaacgacaca
ttttttaaaagaacgacaaattttaaaacaacggcaaattttaaaaaaga
acgacaaatttcgaCATCCACAACTTCGACCCCGGATAAATTGTCCGCCC
TAATGTTTTGATTCCTCTTTATTTATTGCGAAGATTGACGACTTGTGGTT
TTAAAGTACGACAAactacgcatgcgtgttatacTGCAGGATTCTTCACA
GACTTTATATAcactatttttataagaaaaaacaaaacgaAAATGGGCAA
AAGGAAATAACGCTGAATCATTGTATTTTAAGCAAATTAAGTTCAAGTTA
GTCAAAATAGGGTATCAAGCTTAAAATATCACAGTTTTGTCCTAGAAATG
AGCACAGAATATGGAGTAGTATTTAGGCTCAAAGTGTCAAAACCGTCGAG
CCTGaccaaaaatttattcttataaaaaaagagtgcgCACCATTCTTTTA
AAAGGTCATATCTGGACATAAAAAGTACACGTCATAATAATCTATCATAG
TGttcaatgggctattccagaaaaccctcttagtgtggtcgtgttacaaa
agtacaggctgtttgtaggaaaaaaataatatatagctgaaactttctcc
agaccttctctataggatgcttatgcctcNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCAGACaacatcatgtataccattcgaaagctctcaaaaaa
ctatatagaagacttttagacgggtatagccgatttcattacctaactcg
agataattcacgcagatgatgcaatttttggtcaattcAGAAAACCCTCT
ATGATGAGGAGgttgacgtccagggtggtctagaaaattaaaaatccagT
CTGATTATCGAGTATTAGAATCCAGGATCAGTaaatgaggttgaaaatcc
aggatGGTCAATAgaacgaggtcgaaaatccatAGGTGGTTTGAAAATAA
GACGTCCGCGGTTTAGAGCTTAACGTTTGTAGTGGATCGTCTTTTTTAAT
AAACGACTTTTTTTTTAAGGAGCAGTTCTTCAAATTGCATCAATTTGTAC
CTTAATTGGATTTCGATTGAAtcaactttcgcgaatttccaATTCTAAGA
TGAGGGTTTTTGCTAAAATCTCTGGGAAAATGAAAGGAATTAGGTTTAAC
AAGAAGCAGAtttgcgaaattttgtccaagcaaaaattttagattctcAA
TTCGCTAAAAAAAGCCCGctgaaaaaagtcaaattttatccATTTTGGTA
GTTCACTAAATTTTGATATANTATTAGAATTCATTGGTAATGGATGAACG
TGGttaaaaatcttgtttttaacGTATTTTGTGTGCCTATTTAACGTTCC
CACAGTTCCTTCAGGTGCCTCCTATTTATGAAATGTGAATAACAAATTCA
CAGATCCCTAACATGAGATGGACTGCTCTCTTTCATTCTATAAACAACAG
TTTATTTTTTGCTAATTCTTCGACCAgccaaatatttttcattttagctG
NTCCGGTtaaggagtttcttaaaatcagtgtttttcatttgtaattgtgc
gtaaatccGATCAATACATAGATCAATAGCCATAGTCGggttcgatttcc
cgatctttcTGGTTTGATTTCCCGATTCGGTTTGCGTTTGCGCTCGCACT
AACTAGGATATACTCTTCTACATTTTATGTCAGACatattaagaaaggct
gaccCATGACAATTACCGGAGTTTGCAGCCGTCATTACGGCTATTTAATT
TCCCAGTTAACAATATTTACTTCCCGTTCTTCCACAGTGGCATCCGGTGC
CGTGTTCGATTTCAAGAAATATTCATCAATCTTCGCCGCTCCAAACTTCT
TGTATGTGTTCATGATCAAAGNC

Coding sequence (CDS) from alignment at sc0000041:714915..724637+

>TCONS_00004258 ID=TCONS_00004258|Name=TCONS_00004258|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at sc0000041:714915..724637+ (Clytia hemisphaerica)
atgATGCGTAAAAGCagacaagaagaagaagaagaaaagaaaactgAAGA
AGAATCAACAATAgaatcaatttctttttcatctaCAGACAAAAATATGT
TTGGCTTAAACAAGAAAACGTTTGTCATGTACATGACGCATTTTAATATT
GTGCTTTATGCGTTATGTTATTGGATACAAATTGGAGTATTACCGTATTT
GACCAGAAAACTTGGTGTGGACACACAAACATTTGGTATACTACAATCAA
CATTCGCTTTTGTTCAACTTTGTGGTGGGCCTGTCTACGGGCGTTTTGGC
GATTTATTTGGTGGCAAATACTCCCTGATATTAGCCTTCTTTGCATGTTT
CACAAGTTATGGATTATTAGCTGTTGCAGCGAGTATTCCGGTCCTGTTTT
TATCACGCTTACCGTCAATTGCTATGCATTGTATGCAAGGTTCACAGATG
GTCCTAACAGACATCACTTCTGACAATGAACGCGCAAGTGCTATTGGTCG
TCTCGGTGTATCTTACGGCGTTGGCATGGTGATCGGCCCACTCATGGGTG
GGTTTATTACCGACCGCTTTTCAGAGCAGACGGCCGCCGCAACGGCCGCT
TTCGGTTCCATTGTCAGTATTGTATTGGTGGTTTTATTCATACCGGCAAA
CACAAAACTCATTAAAGAGGTTGACGAAAAGACAGAGATTAAAGTGGCAT
CCGGTGCCGTGTTCGATTTCAAGAAATATTCATCAATCTTCGCCGCTCCA
AACTTCTTGTATGTGTTCATGATCAAAGNCatgATGCGTAAAAGCagaca
agaagaagaagaagaaaagaaaactgAAGAAGAATCAACAATAgaatcaa
tttctttttcatctaCAGACAAAAATATGTTTGGCTTAAACAAGAAAACG
TTTGTCATGTACATGACGCATTTTAATATTGTGCTTTATGCGTTATGTTA
TTGGATACAAATTGGAGTATTACCGTATTTGACCAGAAAACTTGGTGTGG
ACACACAAACATTTGGTATACTACAATCAACATTCGCTTTTGTTCAACTT
TGTGGTGGGCCTGTCTACGGGCGTTTTGGCGATTTATTTGGTGGCAAATA
CTCCCTGATATTAGCCTTCTTTGCATGTTTCACAAGTTATGGATTATTAG
CTGTTGCAGCGAGTATTCCGGTCCTGTTTTTATCACGCTTACCGTCAATT
GCTATGCATTGTATGCAAGGTTCACAGATGGTCCTAACAGACATCACTTC
TGACAATGAACGCGCAAGTGCTATTGGTCGTCTCGGTGTATCTTACGGCG
TTGGCATGGTGATCGGCCCACTCATGGGTGGGTTTATTACCGACCGCTTT
TCAGAGCAGACGGCCGCCGCAACGGCCGCTTTCGGTTCCATTGTCAGTAT
TGTATTGGTGGTTTTATTCATACCGGCAAACACAAAACTCATTAAAGAGG
TTGACGAAAAGACAGAGATTAAAGTGGCATCCGGTGCCGTGTTCGATTTC
AAGAAATATTCATCAATCTTCGCCGCTCCAAACTTCTTGTATGTGTTCAT
GATCAAAGNCatgATGCGTAAAAGCagacaagaagaagaagaagaaaaga
aaactgAAGAAGAATCAACAATAgaatcaatttctttttcatctaCAGAC
AAAAATATGTTTGGCTTAAACAAGAAAACGTTTGTCATGTACATGACGCA
TTTTAATATTGTGCTTTATGCGTTATGTTATTGGATACAAATTGGAGTAT
TACCGTATTTGACCAGAAAACTTGGTGTGGACACACAAACATTTGGTATA
CTACAATCAACATTCGCTTTTGTTCAACTTTGTGGTGGGCCTGTCTACGG
GCGTTTTGGCGATTTATTTGGTGGCAAATACTCCCTGATATTAGCCTTCT
TTGCATGTTTCACAAGTTATGGATTATTAGCTGTTGCAGCGAGTATTCCG
GTCCTGTTTTTATCACGCTTACCGTCAATTGCTATGCATTGTATGCAAGG
TTCACAGATGGTCCTAACAGACATCACTTCTGACAATGAACGCGCAAGTG
CTATTGGTCGTCTCGGTGTATCTTACGGCGTTGGCATGGTGATCGGCCCA
CTCATGGGTGGGTTTATTACCGACCGCTTTTCAGAGCAGACGGCCGCCGC
AACGGCCGCTTTCGGTTCCATTGTCAGTATTGTATTGGTGGTTTTATTCA
TACCGGCAAACACAAAACTCATTAAAGAGGTTGACGAAAAGACAGAGATT
AAAGTGGCATCCGGTGCCGTGTTCGATTTCAAGAAATATTCATCAATCTT
CGCCGCTCCAAACTTCTTGTATGTGTTCATGATCAAAGNCatgATGCGTA
AAAGCagacaagaagaagaagaagaaaagaaaactgAAGAAGAATCAACA
ATAgaatcaatttctttttcatctaCAGACAAAAATATGTTTGGCTTAAA
CAAGAAAACGTTTGTCATGTACATGACGCATTTTAATATTGTGCTTTATG
CGTTATGTTATTGGATACAAATTGGAGTATTACCGTATTTGACCAGAAAA
CTTGGTGTGGACACACAAACATTTGGTATACTACAATCAACATTCGCTTT
TGTTCAACTTTGTGGTGGGCCTGTCTACGGGCGTTTTGGCGATTTATTTG
GTGGCAAATACTCCCTGATATTAGCCTTCTTTGCATGTTTCACAAGTTAT
GGATTATTAGCTGTTGCAGCGAGTATTCCGGTCCTGTTTTTATCACGCTT
ACCGTCAATTGCTATGCATTGTATGCAAGGTTCACAGATGGTCCTAACAG
ACATCACTTCTGACAATGAACGCGCAAGTGCTATTGGTCGTCTCGGTGTA
TCTTACGGCGTTGGCATGGTGATCGGCCCACTCATGGGTGGGTTTATTAC
CGACCGCTTTTCAGAGCAGACGGCCGCCGCAACGGCCGCTTTCGGTTCCA
TTGTCAGTATTGTATTGGTGGTTTTATTCATACCGGCAAACACAAAACTC
ATTAAAGAGGTTGACGAAAAGACAGAGATTAAAGTGGCATCCGGTGCCGT
GTTCGATTTCAAGAAATATTCATCAATCTTCGCCGCTCCAAACTTCTTGT
ATGTGTTCATGATCAAAGNCatgATGCGTAAAAGCagacaagaagaagaa
gaagaaaagaaaactgAAGAAGAATCAACAATAgaatcaatttctttttc
atctaCAGACAAAAATATGTTTGGCTTAAACAAGAAAACGTTTGTCATGT
ACATGACGCATTTTAATATTGTGCTTTATGCGTTATGTTATTGGATACAA
ATTGGAGTATTACCGTATTTGACCAGAAAACTTGGTGTGGACACACAAAC
ATTTGGTATACTACAATCAACATTCGCTTTTGTTCAACTTTGTGGTGGGC
CTGTCTACGGGCGTTTTGGCGATTTATTTGGTGGCAAATACTCCCTGATA
TTAGCCTTCTTTGCATGTTTCACAAGTTATGGATTATTAGCTGTTGCAGC
GAGTATTCCGGTCCTGTTTTTATCACGCTTACCGTCAATTGCTATGCATT
GTATGCAAGGTTCACAGATGGTCCTAACAGACATCACTTCTGACAATGAA
CGCGCAAGTGCTATTGGTCGTCTCGGTGTATCTTACGGCGTTGGCATGGT
GATCGGCCCACTCATGGGTGGGTTTATTACCGACCGCTTTTCAGAGCAGA
CGGCCGCCGCAACGGCCGCTTTCGGTTCCATTGTCAGTATTGTATTGGTG
GTTTTATTCATACCGGCAAACACAAAACTCATTAAAGAGGTTGACGAAAA
GACAGAGATTAAAGTGGCATCCGGTGCCGTGTTCGATTTCAAGAAATATT
CATCAATCTTCGCCGCTCCAAACTTCTTGTATGTGTTCATGATCAAAGNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002364XLOC_002364Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004258-proteinTCONS_00004258-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004258-exon-sc0000041-1491911889:714915..715166TCONS_00004258-exon-sc0000041-1491911889:714915..715166Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1510915933:714915..715166TCONS_00004258-exon-sc0000041-1510915933:714915..715166Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1575043694:714915..715166TCONS_00004258-exon-sc0000041-1575043694:714915..715166Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1491911889:715347..715590TCONS_00004258-exon-sc0000041-1491911889:715347..715590Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1510915933:715347..715590TCONS_00004258-exon-sc0000041-1510915933:715347..715590Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1575043694:715347..715590TCONS_00004258-exon-sc0000041-1575043694:715347..715590Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1491911889:715766..715804TCONS_00004258-exon-sc0000041-1491911889:715766..715804Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1510915933:715766..715804TCONS_00004258-exon-sc0000041-1510915933:715766..715804Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1575043694:715766..715804TCONS_00004258-exon-sc0000041-1575043694:715766..715804Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1491911889:716224..716439TCONS_00004258-exon-sc0000041-1491911889:716224..716439Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1510915933:716224..716439TCONS_00004258-exon-sc0000041-1510915933:716224..716439Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1575043694:716224..716439TCONS_00004258-exon-sc0000041-1575043694:716224..716439Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1491911889:724552..724637TCONS_00004258-exon-sc0000041-1491911889:724552..724637Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1510915933:724552..724637TCONS_00004258-exon-sc0000041-1510915933:724552..724637Clytia hemisphaericaexon
TCONS_00004258-exon-sc0000041-1575043694:724552..724637TCONS_00004258-exon-sc0000041-1575043694:724552..724637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:714915..724637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8805	13.1665	5.50095	5.69472	24.6075	18.6626	26.8735	29.3744	19.9944	26.8302	20.204	13.8833	15.1415	13.3054	14.5317	19.5536	26.0393	29.5583	14.8933	19.5438	22.2307	22.6192	26.4926	30.21	13.162	16.0773	24.246	17.6916	32.2921	26.6398
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001958Tet-R_TetA/multi-R_MdtG
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00004258 vs. Swiss-Prot (Human)
Match: S22AI (Solute carrier family 22 member 18 OS=Homo sapiens GN=SLC22A18 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 3.658e-34
Identity = 79/226 (34.96%), Postives = 128/226 (56.64%), Query Frame = 1 
Query:  172 KTFVMYMTHFNIVLYALCYWIQIGVLPYLTRKLGVDTQTFGILQSTFAFVQLCGGPVYGRFGDLFGGK--YSLILAFFACFTSYGLLAVAASIP---VLFLSRLPSIAMHCMQGSQMVLTDITSDNERASAIGRLGVSYGVGMVIGPLMGGFITDRFSEQTAAATAAFGXXXXXXXXXXFIPANTKLIKEVDEKTEIKVASGAVFDFKKYSSIFAAPNFLYVFMIK 834
            ++ V+ +T+        C ++Q  ++PYL+RKLG+D+  FG LQ+TF  +QL GGPV+GRF D  G +   +L              A + ++P   +LF SRLP   MH +  +QMV+TD+++  ER +A+GRLG+ +GVG+++G L+GG +   +  Q  A  AA  +++  VL    IPA+TK  K   +         +VFD K  +S+   P+   +F++K
Sbjct:   22 RSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGIQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDVPRIFLVK 247
The following BLAST results are available for this feature:
BLAST of TCONS_00004258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AI3.658e-3434.96Solute carrier family 22 member 18 OS=Homo sapiens... [more]
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