|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004245 ID=TCONS_00004245|Name=TCONS_00004245|organism=Clytia hemisphaerica|type=transcript|length=2692bp
aatatgggtaaaagtaccccttttttaaacctgactgaaattcgagccgt
tactagcaaccctgcggggcccaaggcgccgaNNNTACCCAGCAGCTGAA
ATCGTaacataaacaaacaaaatggcgtcTTTGAAAATGTTATCAACTCA
AACTCCCTTTCTTATCCATTGATGTGCCTCGCGAGAAGAGAGAAAAGAAT
TAAAGAACACGAATAATTTTTGTATTGCAGCTTGGTTATGTGTAAAGAAT
GTGTTATAAATCCATTTCCAAATCGAAATAAAACATGCTTGGAATCAGGA
TCCTACTTGATCAATTTTAAAGGTTGCAAAGAGTGTGGGAAGCGAGAATT
GATCAAGATTTCGAATAAACAATTGAAAgaagatgatgaagaagaaaata
taaCCTACATTCACACGTGTGACAGTTGTGCGCATGTCATTGCTGAACAT
GAGTATACTTTCTCGGTGATTGATGAAGAGCAAGAATATTCGATGAACTG
TTTATTATGTGGAACAGGTGAAGACACTGTACAACAGTTTATCCCAAAAG
GTAGTGAAAGGTGAATGGGACACCTCAACTTGTCAATGTTCGCAAATTCA
CTTCAGAATGGTCATTTTTATTAATGATAaagttttttaaagctttttat
aaTATTGATTATTGTACCTGGGgttaaatttcagcaaaatgtGATCGTTA
GAGAGACAAAAAGTACCCCCtccataggcgtagcgagatacactgcaaaa
tttatgagggagtgcagacgtttatgataTATTCactatcttttgataaa
acaaagacaataattacatgtcgtaaaaaccgctctcacccataaatttt
gcagggtatctcgctacgtcTATGCCCTCAGATACGTGCTTTCCTAAagc
tgacccttagagagattatTTTGACACTATGCTACTTTTGTAACCCTAGA
GAGACGTTGGAAAGGTAACAAACTGACTCAATAGCTATCTTTGCTTAATA
CCCAgTTTTTGAACCACCAATCATACCAGCGTTTTGTCCACTCAACACTT
TCTTGGTAACACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAGTCA
GTAATGATCATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTTGAT
GAATATGGTTAACGTTGGCAATGCACTGATAACCCACACAAACACCAATG
CTAGAACAGTTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAATTTG
AGAGCCATGAAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGAAGC
AATCAAACTGAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGGAAG
AGATTGGTTCACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCCGCC
CCTGACGTGAAATTTGTTAAACATAAACTGATAATGATTTGTTTATCGGG
CGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACTTGT
AGACCATCGTGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAATCCT
TCCAATATGATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATCTTT
GAACGTCATGTTGACTGGAGTCTTTTAAGcgaatttataaaatttgataa
ttttcaactCTATAATATTTAAATAGAAATTTACACCATGTTATAATAAA
TTTATAAGTGATGAGACACAcaccaatgaagtaaaagcccaaagggctag
aagcgaatctcttAAGAAGGATTTGATACCActaaatcctacctaagttg
cGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACAATCACcagattgaaat
taaaatttgccgcttgatttcaaaaaatatataactcgaaaacaaagaaa
ccactAAATTCaatacgtcatcaaaaaaaaacgGCGTatatcttaaggct
tcactttttcttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTTCGGG
CTTTCACTTCATTAATACATACCCGAGAAATCAAGACACAAGTGCCTCTT
CGTCTCACTCGTAATGAACGAGAgatgtattttttaaaaatgagaTTCAA
ATAAAGTTTCCAAAGCGACTCTCTTCCTCTTTGGTTTGTTTACCTTTATA
AAActtcatcaaaacaaacaacctGAACGTCATCAGTCAAAACCACCAGA
AAGATTCTTTCAACTTATCACTACCTCATATCGACTTTATATGGCGATAA
AAGTCAACATTGCTCTTTTCCCTCCTCTTCTCTCGAGTTACGTGATAAAA
AGATCTGTGATTTTTGTCGGTTGAGAAGTTTTCACCTTTCTGTTCGCTGA
ATGCCCTTTTCATTATCACATACCCACGAGTCTTTAATTCCGATTTGTAA
TATTCAACCACTTGCAATTTTATGAATGTCTCTTGTGAATTTATTCAGAT
TTCTAAatggaatgttttttttcgattttttattcagtttatCCAATATA
ACTTGTTATTCGCTGAAAAATTATACTAAAAATATCCAATTTCCATCAAA
TTAATTCGTTCATTCCTTTATCAAACCTGTAATTAAGATATTACAACAAA
TTATCAAATTATTTATTGCTCCTCCTTCCTCCATTTAGCAAGCTATGGTA
GTACTTCAATCTTCAACTATTTTCGTAGTATTTTTCATCGCG Run BLAST on NCBI transcript from alignment at sc0000041:398710..405329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004245 ID=TCONS_00004245|Name=TCONS_00004245|organism=Clytia hemisphaerica|type=transcript|length=6620bp|location=Sequence derived from alignment at sc0000041:398710..405329+ (Clytia hemisphaerica)
aatatgggtaaaagtaccccttttttaaacctgactgaaattcgagccgt
tactagcaaccctgcggggcccaaggcgccgaNNNTACCCAGCAGCTGAA
ATCGTaacataaacaaacaaaatggcgtcTTTGAAAATGTTATCAACTCA
AACTCCCTTTCTTATCCATTGATGTGCCTCGCGAGAAGAGAGAAAAGAAT
TAAAGAACACGAATAATTTTTGTATTGCAGCTTGGTTATGTGTAAAGAAT
GTGTTATAAATCCATTTCCAAATCGAAATAAAACATGCTTGGAATCAGGA
TCCTACTTGATCAATTTTAAAGgtaaaacaaatttattttctagtCTAGC
TTAGCTAGCTTGGTATGTCTTTTTTATTCTAATATAAActgggcactggg
tttgcggactgacggtatgtgtgggccaaaaattggcttttaaaattgca
ccctaccttacagtgcagcaaaaatgagtgaaaatcatacccctagagca
ttttcccccaaattttcgatccctttcgtgcaaaaaatggtcaaaattct
agcatttttggtcaaaatatctagatttttcaagagttttctgaaatttc
tacccttacagtgctgcatctctagtttttccgacccttacagtgcattt
taaacatattggaaaaggtacccttaggacccgcacatacccgtcggtcc
ttttgcccagctgccccccccccaggtggtagaccttttgctattcAGCA
GGATCTCATGTATATGTTGAATAACTACAGGGGGTTTGTAGGGATTCGAA
ACACCATTTACCCGTCAAAATGTTGGGTGAGTCCTGGAATCGGGGGCAAA
AAGATGTGGGATGGGGATGTGCCGCTTGGTTAGGGTACCTTTATTTATCT
TCTCACCTCCATGAGTCACATGAGTCCACAGTAGGGCAGGGtctcaaaaa
caacaaattaaagaaattagTCCTTCTTAAGGTACGTTTTTGGGGGAATT
ACATCATCATCTTCAGCCTCATCATAGACATATTCATATGTCTAtggtcc
cattcagggtcacattttcgaacctcagcgacACACCCCGTCAATATTTG
ATATTTCCTAGCTTGAATGATTGCAGATTCCGCCTTGAAACAAGCGAATT
TTTAAGAGTGAAACAACATACattaaaacacccccttctcacagattcGG
TgagatttttcagccagtgggggtagaAATAGCAGACCAAAACTCaacgg
ggattgatattcccatttcGGTCATGACTGGGGATTCGAATTCCATTGTT
TCTGAgcaagaaaattcagtgggggtgGAAAAAATACCAGAATAATTTGC
AGTAAggattactttaatcgtagaaattttagcgagactaattttagcgt
tttagcgagttttccctattttcgctaaaataaatctcgctaaaatttat
ccgcgcgaaatttctggttatattgccttgatacatttttatcaatagga
agggtttcagtgcgaAAAAATGCTAGAACATAAATTCAATCAATAATGTT
AATacaagtattcgctaaaatttatccacgcgaaattttttgaaatcgtg
attcgctaaaataaatccaaaaaaaatcaagattttcctgagtCGCTatt
atacgctaaaattagtctcgctaaaatttctacgattaaagtagcataaa
acataaaataccAAATAGTATGTACGAAAGGTAAAACACTcggagaaaaa
attaaaattaaatttaaaaaaatcattgaaatgaAACACAAAATAGTTAA
TGTTAATCGTTTCTGAGAAACTTTAATGGTATTTTACAATCTAATCGAAA
ACGGGTTCTTATTGAATACAGTAGTATACAGTATATTGATTTAAAGAGCG
ATCctgtaaatatattttaaagcggtgaaaatttttttttttcaatacgt
CCATTAAAAAGTGAATGGACTTTACCTATTAAAGTAGCGATAAATGTCTA
AAACACTATATAAACTTTTTAATGAGGTCAGATAGAATTTAGAATTTCCc
actaaattttaatttttcccgccatccgccaaagtaaattcccgccaaaa
tttcttcccctgAAGGTATATTAAGAATTTGCTTTTTGATAGGTTGCAAA
GAGTGTGGGAAGCGAGAATTGATCAAGATTTCGAATAAACAATTGAAAga
agatgatgaagaagaaaatataaCCTACATTCACACGTGTGACAGTTGTG
CGCATGTCATTGCTGAACATGAGTATACTTTCTCGGTGATTGATGAAGAG
CAAGAATATTCGATGAACTGTTTATTATGTGGAACAGGTGAAGACACTGT
ACAACAGTTTATCCCAAAAGGTAGTGAAAGGTGAATGGGACACCTCAACT
TGTCAATGTTCGCAAATTCACTTCAGAATGGTCATTTTTATTAATGATAa
agttttttaaagctttttataaTATTGATTATTGTACCTGGGgttaaatt
tcagcaaaatgtGATCGTTAGAGAGACAAAAAGTACCCCCtccataggcg
tagcgagatacactgcaaaatttatgagggagtgcagacgtttatgataT
ATTCactatcttttgataaaacaaagacaataattacatgtcgtaaaaac
cgctctcacccataaattttgcagggtatctcgctacgtcTATGCCCTCA
GATACGTGCTTTCCTAAagctgacccttagagagattatTTTGACACTAT
GCTACTTTTGTAACCCTAGAGAGACGTTGGAAAGGTAACAAACTGACTCA
ATAGCTATCTTTGCTTAATACCCAggtattttttattgttttgatattgt
tttaatttatttacactacatgttttcaaaaaaactattACTCCCACTAG
CAAAAAGAACTTTGCAATTTCTCACAGTTTTGAATCATAAGCAGAAGTTG
CATTTGTATCATAAGTCTTTTGTACCGAATTTGAGGCTTCTAAagatttc
gaatctttcgagTGTTTACAACAATTCATTTGATTAGCCAAAATATACAA
CAAAGGGTCAGCAATTGCTTTTAGTAGAATGAGAATCATTAAAACTCCAT
CTACACGTGCTCCACTGTACAATGAAACAGCTTCTCCACCTTTGAAGATC
ATGATCAAAACAGNAAATTTCAGCAAAATGTGATCGTTAGAGAGACAAAA
AGTACCCCCtccataggcgtagcgagatacactgcaaaatttatgaggga
gtgcagacgtttatgataTATTCactatcttttgataaaacaaagacaat
aattacatgtcgtaaaaaccgctctcacccataaattttgcagggtatct
cgctacgtcTATGCCCTCAGATACGTGCTTTCCTAAagctgacccttaga
gagattatTTTGACACTATGCTACTTTTGTAACCCTAGAGAGACGTTGGA
AAGGTAACAAACTGACTCAATAGCTATCTTTGCTTAATACCCAggtattt
tttattgttttgatattgttttaatttatttacactacatgttttcaaaa
aaactattACTCCCACTAGCAAAAAGAACTTTGCAATTTCTCACAGTTTT
GAATCATAAGCAGAAGTTGCATTTGTATCATAAGTCTTTTGTACCGAATT
TGAGGCTTCTAAagatttcgaatctttcgagTGTTTACAACAATTCATTT
GATTAGCCAAAATATACAACAAAGGGTCAGCAATTGCTTTTAGTAGAATG
AGAATCATTAAAACTCCATCTACACGTGCTCCACTGTACAATGAAACAGC
TTCTCCACCTTTGAAGATCATGATCAAAACAGGGGGTATGGTGAATAAGA
TATAAGCAACCATAATGGTAGACCAGAAGCGTGTAATCTCTTTCTCATAA
TCACGTGATTCAGTTTTTGAACCACCAATCATACCAGCGTTTTGTCCACT
CAACACTTTTTTGGTAACACTGATGATGTAGATGCTGGATAGGATGAGGA
AGAAGTCAGTAATGATCATTATGATGGAGATGATTTCCAATGCTCCAGAT
CTGTTGATGAATATGGTTAACGTTGGCAATGCACTGATAACCCACACAAA
CACCAATGCTAGAACAGTTGATCTCTTTTTGACTTCACGATGTCGGAAGG
GAAATTTGAGAGCCATGAAGCGTTCCAATGATAATAGAATAACGTGAAGT
AACGAAGCAATCAAACTGAATAAGATGATAAACGCCAGGACTAAGATCTT
CTTGGAAGAGATTGGTTCACCTGCAGCAAAACAAGCGAACTCCACTATCA
CAGCCGCCCCTGACGTGAAATTTGTTAAACATAAACTGATAATGATTTGT
TTATCGGGCGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCG
TAACTTGTAGACCATCGTGAAGATGGCTGTGGTGTTTAAAAACACGATGG
TGAATCCTTCCAATATGATGAAAATAACGAGTCCTTTGAATGTTGCTTCT
CCATCTTTGAACGTCATGTTGACTGGAGTGTTTTAAGcgaatttataaaa
tttgataattttcaactCTATAATATTTAAATAGAAATTTACACCATGTT
ATAATAAATTTATAAGTGATGAGACACAcaccaatgaagtaaaagcccaa
agggctagaagcgaatctcttAAGAAGGATTTGATACCActaaatcctac
ctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACAATCACcag
attgaaattaaaatttgccgcttgatttcaaaaaatatataactcgaaaa
caaagaaaccactAAATTCaatacgtcatcaaaaaaaaacgGCGTatatc
ttaaggcttcactttttcttttctgaGAAAAGTTAAAGATTCGCTTCTAC
CCTNGATCTCTTTCTCATAATCACGTGATTCAGTTTTTGAACCACCAATC
ATACCAGCGTTTTGTCCACTCAACACTTTCTTGGTAACACTGATGATGTA
GATGCTGGATAGGATGAGGAAGAAGTCAGTAATGATCATTATGATGGAGA
TGATTTCCAATGCTCCAGATCTGTTGATGAATATGGTTAACGTTGGCAAT
GCACTGATAACCCACACAAACACCAATGCTAGAACAGTTGATCTCTTTTT
GACTTCACGATGTCGGAAGGGAAATTTGAGAGCCATGAAGCGTTCCAATG
ATAATAGAATAACGTGAAGTAACGAAGCAATCAAACTGAATAAGATGATA
AACGCCAGGACTAAGATCTTCTTGGAAGAGATTGGTTCACCTGCAGCAAA
ACAAGCGAACTCCACTATCACAGCCGCCCCTGACGTGAAATTTGTTAAAC
ATAAACTGATAATGATTTGTTTATCGGGCGTCATCTTCCGCCCTCTTCTC
GATGTCTTTGAGTTTCTTCGTAACTTGTAGACCATCGTGAAGATGGCTGT
GGTGTTTAAAAACACGATGGTGAATCCTTCCAATATGATGAAAATAACGA
GTCCTTTGAATGTTGCTTCTCCATCTTTGAACGTCATGTTGACTGGAGTC
TTTTAAGcgaatttataaaatttgataattttcaactCTATAATATTTAA
ATAGAAATTTACACCATGTTATAATAAATTTATAAGTGATGAGACACAca
ccaatgaagtaaaagcccaaagggctagaagcgaatctcttAAGAAGGAT
TTGATACCActaaatcctacctaagttgcGTGGCCTTGAGCGGTCCGCGT
GGTTTTAATACAATCACcagattgaaattaaaatttgccgcttgatttca
aaaaatatataactcgaaaacaaagaaaccactAAATTCaatacgtcatc
aaaaaaaaacgGCGTatatcttaaggcttcactttttcttttctgaGAAA
AGTTAAAGATTCGCTTCTACCCTTCGGGCTTTCACTTCATTAATACATAC
CCGAGAAATCAAGACACAAGTGCCTCTTCGTCTCACTCGTAATGAACGAG
AgatgtattttttaaaaatgagaTTCAAATAAAGTTTCCAAAGCGACTCT
CTTCCTCTTTGGTTTGTTTACCTTTATAAAActtcatcaaaacaaacaac
ctGAACGTCATCAGTCAAAACCACCAGAAAGATTCTTTCAACTTATCACT
ACCTCATATCGACTTTATATGGCGATAAAAGTCAACATTGCTCTTTTCCC
TCCTCTTCTCTCGAGTTACGTGATAAAAAGATCTGTGATTTTTGTCGGTT
GAGAAGTTTTCACCTTTCTGTTCGCTGAATGCCCTTTTCATTATCACATA
CCCACGAGTCTTTAATTCCGATTTGTAATATTCAACCACTTGCAATTTTA
TGAATGTCTCTTGTGAATTTATTCAGATTTCTAAatggaatgtttttttt
cgattttttattcagtttatCCAATATAACTTGTTATTCGCTGAAAAATT
ATACTAAAAATATCCAATTTCCATCAAATTAATTCGTTCATTCCTTTATC
AAACCTGTAATTAAGATATTACAACAAATTATCAAATTATTTATTGCTCC
TCCTTCCTCCATTTAGCAAGCTATGGTAGTACTTCAATCTTCAACTATTT
TCGTAGTATTTTTCATCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004245-exon-sc0000041-1491911889:398710..399031 | TCONS_00004245-exon-sc0000041-1491911889:398710..399031 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1510915933:398710..399031 | TCONS_00004245-exon-sc0000041-1510915933:398710..399031 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1575043694:398710..399031 | TCONS_00004245-exon-sc0000041-1575043694:398710..399031 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1491911889:400852..401534 | TCONS_00004245-exon-sc0000041-1491911889:400852..401534 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1510915933:400852..401534 | TCONS_00004245-exon-sc0000041-1510915933:400852..401534 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1575043694:400852..401534 | TCONS_00004245-exon-sc0000041-1575043694:400852..401534 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1491911889:403643..405329 | TCONS_00004245-exon-sc0000041-1491911889:403643..405329 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1510915933:403643..405329 | TCONS_00004245-exon-sc0000041-1510915933:403643..405329 | Clytia hemisphaerica | exon |
| TCONS_00004245-exon-sc0000041-1575043694:403643..405329 | TCONS_00004245-exon-sc0000041-1575043694:403643..405329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:398710..405329 + |
Blast
BLAST of TCONS_00004245 vs. Swiss-Prot (Human)
Match: CHUR (Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 2.658e-34 Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 232 LVMCKECVINPFPNRNKTCLESGSYLINFKGCKECGKRELIKISNKQLKEDDEEENITYIHTCDSCAHVIAEHEYTFSVIDEEQEYSMNCLLCGTGEDTV 531
+ MC +CV +PNR TCLE+GS+L+NF GC C KR+ + I+NK LKE+D EE +TY H C +C HVIA HEYTFS++DE QEY+M CLLCG EDT+
Sbjct: 26 VAMCGDCVEKEYPNRGNTCLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKAEDTI 125
The following BLAST results are available for this feature:
|
