TCONS_00004242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004242
Unique NameTCONS_00004242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004242 ID=TCONS_00004242|Name=TCONS_00004242|organism=Clytia hemisphaerica|type=transcript|length=1460bp
GATAGTTTGGTTTCACGCATGCGTAAGAGgaatggTTCGCAAGAACAAGA
AGATCTCCATCAACGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACG
CTGCAACGTTTTCCACACACACTCCTCGGTGATCCCACCTTACGTATCTC
GCACTACGACGTCCAACGCAACTCTCTTTATTTCGATAACACGTGTGAAG
CTTTCGacgccattttgttttattatcaaTCGAACGGTTGCTTGGTGCGA
CCGCCCTGGGTTCCCatggaaaaattcgaattcgaatgtttatttttcaa
attgggTGAAAACGCGATCAAATCGATGAAAGAACGTGAAGGTTATGATA
CgcagaaaaaagtgacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAA
TTGTGGAATTTTCTGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTA
TACTTTCTTATCACTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTT
TTGAAACCACTTTACCGGTACTGCCGAGCGACTACGACATCATGCAAGAT
AACTGGGAGAAAACCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATT
CATCATCCGATTTTCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTT
TCTTGAATATTGTTGACTTTTTCGCCATTTTCCCttcatttttgacgtat
tttttaGACCGTGAAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACG
TACGTTACGTGTCTTACGTTTGATACGcttatcaaaaagttttcaaacgC
TCTCCGTTGTACTTCATATATTGGTAAAAAGTTTGGCAGATTTACTAACG
CTCATATTTTGCATGTTAATCTCGTGTACAATTTTTGGGAGCATTATATA
CTATGCAGAACATTTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATAT
CCAGTATACCTGAAGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATT
GGTTACGGAGATATTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGC
CATGACGGCTATTGTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGT
TGGGCGGCAAATATTTCGCCACCTACACCAAGACTTTTGATGTCAATTTG
AGCGCCGACCTTATCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGC
GAAGAAGAGAGAACTTAACAAAACTACTAATGACttaaaagatatttaaa
aaacttattaatttattttatatatATGATATATTCTCTATATTTTACaa
tcaacatttttataaaaaagacaatcaaatatttgaaaattgaatcagCG
TTGAActcaatttttcaacaaaaaaatagttttgctaAAATTCAAGCTTG
TCTTTAAAGTGAAATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAAT
GCATAGACTT
Run BLAST on NCBI

transcript from alignment at sc0000041:369095..371047+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004242 ID=TCONS_00004242|Name=TCONS_00004242|organism=Clytia hemisphaerica|type=transcript|length=1953bp|location=Sequence derived from alignment at sc0000041:369095..371047+ (Clytia hemisphaerica)
GATAGTTTGGTTTCACGCATGCGTAAGAGGTAACGTTCCCATTCATTTGT AGAATTAAATCGCTTTAGTCGTGTTTGTGCCAAAGGTGACACTTATGCAT GCACCTATGTTATGGATGATGTTTAAGTTTTCTAACAGATCTTCCCTGAG ATCTTCCCATTCCAATTGAAAACGAAGAAgtgtgaaaatgaaataaacta GCCGCTGATCCGAAAGCCACTATATTCTCCTTTCGACTGATAAAGCGAGA AAAACTCATAAAAATTTAACtaattattttttagctttgaGAGTAACGTT TTCccgaaaaacaatttttaatttgaatattagactttgaaaaaaaactc gAATAAAACAAGGGACATGATAAAACTTTATCGATTCGGGGAACATTACG AAGATACAAGCTTTATCATCAAACTCTTCAATATCGAGACAATAAAAGGA GAGAGTCATGCGTGTACAATCTTTACTaccttttgatttgttttacgaca tctatttttgattttttttcaggaatggTTCGCAAGAACAAGAAGATCTC CATCAACGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACGCTGCAAC GTTTTCCACACACACTCCTCGGTGATCCCACCTTACGTATCTCGCACTAC GACGTCCAACGCAACTCTCTTTATTTCGATAACACGTGTGAAGCTTTCGa cgccattttgttttattatcaaTCGAACGGTTGCTTGGTGCGACCGCCCT GGGTTCCCatggaaaaattcgaattcgaatgtttatttttcaaattgggT GAAAACGCGATCAAATCGATGAAAGAACGTGAAGGTTATGATACgcagaa aaaagtgacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAATTGTGGA ATTTTCTGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTATACTTTC TTATCACTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTTTTGAAAC CACTTTACCGGTACTGCCGAGCGACTACGACATCATGCAAGATAACTGGG AGAAAACCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATTCATCATC CGATTTTCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTTTCTTGAA TATTGTTGACTTTTTCGCCATTTTCCCttcatttttgacgtattttttaG ACCGTGAAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACGTACGTTA CGTGTCTTACGTTTGATACGcttatcaaaaagttttcaaacgCTCTCCGT TGTACTTCATATATTGGTAAAAAGTTTGGCAGATTTACTAACGCTCATAT TTTGCATGTTAATCTCGTGTACAATTTTTGGGAGCATTATATACTATGCA GAACATTTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATATCCAGTAT ACCTGAAGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATTGGTTACG GAGATATTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGCCATGACG GCTATTGTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGTTGGGCGG CAAATATTTCGCCACCTACACCAAGACTTTTGATGTCAATTTGAGCGCCG ACCTTATCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGCGAAGAAG AGAGAACTTAACAAAACTACTAATGACttaaaagatatttaaaaaactta ttaatttattttatatatATGATATATTCTCTATATTTTACaatcaacat ttttataaaaaagacaatcaaatatttgaaaattgaatcagCGTTGAAct caatttttcaacaaaaaaatagttttgctaAAATTCAAGCTTGTCTTTAA AGTGAAATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAATGCATAGA CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002358XLOC_002358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004242-exon-sc0000041-1491911889:369095..369123TCONS_00004242-exon-sc0000041-1491911889:369095..369123Clytia hemisphaericaexon
TCONS_00004242-exon-sc0000041-1510915933:369095..369123TCONS_00004242-exon-sc0000041-1510915933:369095..369123Clytia hemisphaericaexon
TCONS_00004242-exon-sc0000041-1575043694:369095..369123TCONS_00004242-exon-sc0000041-1575043694:369095..369123Clytia hemisphaericaexon
TCONS_00004242-exon-sc0000041-1491911889:369617..371047TCONS_00004242-exon-sc0000041-1491911889:369617..371047Clytia hemisphaericaexon
TCONS_00004242-exon-sc0000041-1510915933:369617..371047TCONS_00004242-exon-sc0000041-1510915933:369617..371047Clytia hemisphaericaexon
TCONS_00004242-exon-sc0000041-1575043694:369617..371047TCONS_00004242-exon-sc0000041-1575043694:369617..371047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:369095..371047 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0.000710403 0 0.357675 0 0 0 0 0 0 0 0 0 0 3.00857e-05 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00004242 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 4.059e-53
Identity = 132/407 (32.43%), Postives = 221/407 (54.30%), Query Frame = 2
Query:   47 KKISINVRGTVYETFEETLQRFPHTLLGDPTLRISHYDVQRNSLYFDNTCEAFDAILFYYQSNGCLVRPPWVPMXXXXXXXXXXXXXXNAIKSMKEREGYDTQKKVTVKNERKTCRRKLWNFLEKPESSLMSRLYTFLSLMMVFFSITLDCFETTLPVLPSDYDIMQ--DNWEKTKLSLNT----------------FFAAEFIIRFSACPYRRKFCKAFLNIVDFFAIFPSFLTYFLD---------RENTRSIMFXXXXXXXXXXXXXXXSKSFQTLSVVLHILVKSLADLLTLIFCMLISCTIFGSIIYYAEHFSESPDQRTSQISSIPEGMYFAMQTVVSIGYGDIVPSSFAGKITTAMTAIVGALTMTVPLLSLGGKYFATYTKTFDVNLSADLINTPGPNV 1186
            +++ IN+ G  +ET  +TL +FP+TLLG+P  R+ ++D  RN  +FD    +FDAIL+YYQS G L RP  VP++ F  E  F++LGE A++  +E EG+  +++  +    K  +R++W   E PESS  +R+   +S+M++  SI + C E TLP L  D D        + T +  N+                +F+ E ++RF ACP +  F K  +N +D  AI P F+T   +          E   S+  +RV+R +RV R+ +LS+  + L ++   L  S+ +L  LIF + I   +F S +Y+AE      ++  S  SSIP+  ++A+ ++ ++GYGD+ P +  GKI  ++ AI G LT+ +P+  +   +   Y +  +    A L++   PN+
Sbjct:   37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLP--EKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE-TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE-----AEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLHVSSPNL 435          
The following BLAST results are available for this feature:
BLAST of TCONS_00004242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA14.059e-5332.43Potassium voltage-gated channel subfamily A member... [more]
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