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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004242 ID=TCONS_00004242|Name=TCONS_00004242|organism=Clytia hemisphaerica|type=transcript|length=1460bp
GATAGTTTGGTTTCACGCATGCGTAAGAGgaatggTTCGCAAGAACAAGA
AGATCTCCATCAACGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACG
CTGCAACGTTTTCCACACACACTCCTCGGTGATCCCACCTTACGTATCTC
GCACTACGACGTCCAACGCAACTCTCTTTATTTCGATAACACGTGTGAAG
CTTTCGacgccattttgttttattatcaaTCGAACGGTTGCTTGGTGCGA
CCGCCCTGGGTTCCCatggaaaaattcgaattcgaatgtttatttttcaa
attgggTGAAAACGCGATCAAATCGATGAAAGAACGTGAAGGTTATGATA
CgcagaaaaaagtgacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAA
TTGTGGAATTTTCTGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTA
TACTTTCTTATCACTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTT
TTGAAACCACTTTACCGGTACTGCCGAGCGACTACGACATCATGCAAGAT
AACTGGGAGAAAACCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATT
CATCATCCGATTTTCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTT
TCTTGAATATTGTTGACTTTTTCGCCATTTTCCCttcatttttgacgtat
tttttaGACCGTGAAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACG
TACGTTACGTGTCTTACGTTTGATACGcttatcaaaaagttttcaaacgC
TCTCCGTTGTACTTCATATATTGGTAAAAAGTTTGGCAGATTTACTAACG
CTCATATTTTGCATGTTAATCTCGTGTACAATTTTTGGGAGCATTATATA
CTATGCAGAACATTTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATAT
CCAGTATACCTGAAGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATT
GGTTACGGAGATATTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGC
CATGACGGCTATTGTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGT
TGGGCGGCAAATATTTCGCCACCTACACCAAGACTTTTGATGTCAATTTG
AGCGCCGACCTTATCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGC
GAAGAAGAGAGAACTTAACAAAACTACTAATGACttaaaagatatttaaa
aaacttattaatttattttatatatATGATATATTCTCTATATTTTACaa
tcaacatttttataaaaaagacaatcaaatatttgaaaattgaatcagCG
TTGAActcaatttttcaacaaaaaaatagttttgctaAAATTCAAGCTTG
TCTTTAAAGTGAAATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAAT
GCATAGACTT Run BLAST on NCBI transcript from alignment at sc0000041:369095..371047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004242 ID=TCONS_00004242|Name=TCONS_00004242|organism=Clytia hemisphaerica|type=transcript|length=1953bp|location=Sequence derived from alignment at sc0000041:369095..371047+ (Clytia hemisphaerica)
GATAGTTTGGTTTCACGCATGCGTAAGAGGTAACGTTCCCATTCATTTGT
AGAATTAAATCGCTTTAGTCGTGTTTGTGCCAAAGGTGACACTTATGCAT
GCACCTATGTTATGGATGATGTTTAAGTTTTCTAACAGATCTTCCCTGAG
ATCTTCCCATTCCAATTGAAAACGAAGAAgtgtgaaaatgaaataaacta
GCCGCTGATCCGAAAGCCACTATATTCTCCTTTCGACTGATAAAGCGAGA
AAAACTCATAAAAATTTAACtaattattttttagctttgaGAGTAACGTT
TTCccgaaaaacaatttttaatttgaatattagactttgaaaaaaaactc
gAATAAAACAAGGGACATGATAAAACTTTATCGATTCGGGGAACATTACG
AAGATACAAGCTTTATCATCAAACTCTTCAATATCGAGACAATAAAAGGA
GAGAGTCATGCGTGTACAATCTTTACTaccttttgatttgttttacgaca
tctatttttgattttttttcaggaatggTTCGCAAGAACAAGAAGATCTC
CATCAACGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACGCTGCAAC
GTTTTCCACACACACTCCTCGGTGATCCCACCTTACGTATCTCGCACTAC
GACGTCCAACGCAACTCTCTTTATTTCGATAACACGTGTGAAGCTTTCGa
cgccattttgttttattatcaaTCGAACGGTTGCTTGGTGCGACCGCCCT
GGGTTCCCatggaaaaattcgaattcgaatgtttatttttcaaattgggT
GAAAACGCGATCAAATCGATGAAAGAACGTGAAGGTTATGATACgcagaa
aaaagtgacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAATTGTGGA
ATTTTCTGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTATACTTTC
TTATCACTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTTTTGAAAC
CACTTTACCGGTACTGCCGAGCGACTACGACATCATGCAAGATAACTGGG
AGAAAACCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATTCATCATC
CGATTTTCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTTTCTTGAA
TATTGTTGACTTTTTCGCCATTTTCCCttcatttttgacgtattttttaG
ACCGTGAAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACGTACGTTA
CGTGTCTTACGTTTGATACGcttatcaaaaagttttcaaacgCTCTCCGT
TGTACTTCATATATTGGTAAAAAGTTTGGCAGATTTACTAACGCTCATAT
TTTGCATGTTAATCTCGTGTACAATTTTTGGGAGCATTATATACTATGCA
GAACATTTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATATCCAGTAT
ACCTGAAGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATTGGTTACG
GAGATATTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGCCATGACG
GCTATTGTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGTTGGGCGG
CAAATATTTCGCCACCTACACCAAGACTTTTGATGTCAATTTGAGCGCCG
ACCTTATCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGCGAAGAAG
AGAGAACTTAACAAAACTACTAATGACttaaaagatatttaaaaaactta
ttaatttattttatatatATGATATATTCTCTATATTTTACaatcaacat
ttttataaaaaagacaatcaaatatttgaaaattgaatcagCGTTGAAct
caatttttcaacaaaaaaatagttttgctaAAATTCAAGCTTGTCTTTAA
AGTGAAATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAATGCATAGA
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004242-exon-sc0000041-1491911889:369095..369123 | TCONS_00004242-exon-sc0000041-1491911889:369095..369123 | Clytia hemisphaerica | exon |
| TCONS_00004242-exon-sc0000041-1510915933:369095..369123 | TCONS_00004242-exon-sc0000041-1510915933:369095..369123 | Clytia hemisphaerica | exon |
| TCONS_00004242-exon-sc0000041-1575043694:369095..369123 | TCONS_00004242-exon-sc0000041-1575043694:369095..369123 | Clytia hemisphaerica | exon |
| TCONS_00004242-exon-sc0000041-1491911889:369617..371047 | TCONS_00004242-exon-sc0000041-1491911889:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004242-exon-sc0000041-1510915933:369617..371047 | TCONS_00004242-exon-sc0000041-1510915933:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004242-exon-sc0000041-1575043694:369617..371047 | TCONS_00004242-exon-sc0000041-1575043694:369617..371047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:369095..371047 + |
Blast
BLAST of TCONS_00004242 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 4.059e-53 Identity = 132/407 (32.43%), Postives = 221/407 (54.30%), Query Frame = 2
Query: 47 KKISINVRGTVYETFEETLQRFPHTLLGDPTLRISHYDVQRNSLYFDNTCEAFDAILFYYQSNGCLVRPPWVPMXXXXXXXXXXXXXXNAIKSMKEREGYDTQKKVTVKNERKTCRRKLWNFLEKPESSLMSRLYTFLSLMMVFFSITLDCFETTLPVLPSDYDIMQ--DNWEKTKLSLNT----------------FFAAEFIIRFSACPYRRKFCKAFLNIVDFFAIFPSFLTYFLD---------RENTRSIMFXXXXXXXXXXXXXXXSKSFQTLSVVLHILVKSLADLLTLIFCMLISCTIFGSIIYYAEHFSESPDQRTSQISSIPEGMYFAMQTVVSIGYGDIVPSSFAGKITTAMTAIVGALTMTVPLLSLGGKYFATYTKTFDVNLSADLINTPGPNV 1186
+++ IN+ G +ET +TL +FP+TLLG+P R+ ++D RN +FD +FDAIL+YYQS G L RP VP++ F E F++LGE A++ +E EG+ +++ + K +R++W E PESS +R+ +S+M++ SI + C E TLP L D D + T + N+ +F+ E ++RF ACP + F K +N +D AI P F+T + E S+ +RV+R +RV R+ +LS+ + L ++ L S+ +L LIF + I +F S +Y+AE ++ S SSIP+ ++A+ ++ ++GYGD+ P + GKI ++ AI G LT+ +P+ + + Y + + A L++ PN+
Sbjct: 37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLP--EKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE-TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE-----AEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLHVSSPNL 435
The following BLAST results are available for this feature:
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