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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004241 ID=TCONS_00004241|Name=TCONS_00004241|organism=Clytia hemisphaerica|type=transcript|length=1453bp
TGCTTACTAGTTTCAACAAGAGgaatggTTCGCAAGAACAAGAAGATCTC
CATCAACGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACGCTGCAAC
GTTTTCCACACACACTCCTCGGTGATCCCACCTTACGTATCTCGCACTAC
GACGTCCAACGCAACTCTCTTTATTTCGATAACACGTGTGAAGCTTTCGa
cgccattttgttttattatcaaTCGAACGGTTGCTTGGTGCGACCGCCCT
GGGTTCCCatggaaaaattcgaattcgaatgtttatttttcaaattgggT
GAAAACGCGATCAAATCGATGAAAGAACGTGAAGGTTATGATACgcagaa
aaaagtgacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAATTGTGGA
ATTTTCTGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTATACTTTC
TTATCACTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTTTTGAAAC
CACTTTACCGGTACTGCCGAGCGACTACGACATCATGCAAGATAACTGGG
AGAAAACCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATTCATCATC
CGATTTTCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTTTCTTGAA
TATTGTTGACTTTTTCGCCATTTTCCCttcatttttgacgtattttttaG
ACCGTGAAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACGTACGTTA
CGTGTCTTACGTTTGATACGcttatcaaaaagttttcaaacgCTCTCCGT
TGTACTTCATATATTGGTAAAAAGTTTGGCAGATTTACTAACGCTCATAT
TTTGCATGTTAATCTCGTGTACAATTTTTGGGAGCATTATATACTATGCA
GAACATTTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATATCCAGTAT
ACCTGAAGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATTGGTTACG
GAGATATTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGCCATGACG
GCTATTGTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGTTGGGCGG
CAAATATTTCGCCACCTACACCAAGACTTTTGATGTCAATTTGAGCGCCG
ACCTTATCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGCGAAGAAG
AGAGAACTTAACAAAACTACTAATGACttaaaagatatttaaaaaactta
ttaatttattttatatatATGATATATTCTCTATATTTTACaatcaacat
ttttataaaaaagacaatcaaatatttgaaaattgaatcagCGTTGAAct
caatttttcaacaaaaaaatagttttgctaAAATTCAAGCTTGTCTTTAA
AGTGAAATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAATGCATAGA
CTT Run BLAST on NCBI transcript from alignment at sc0000041:366320..371047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004241 ID=TCONS_00004241|Name=TCONS_00004241|organism=Clytia hemisphaerica|type=transcript|length=4728bp|location=Sequence derived from alignment at sc0000041:366320..371047+ (Clytia hemisphaerica)
TGCTTACTAGTTTCAACAAGAGGTATGAAATAGGTGCCTTCAGTTTGAAG
GTTTGTTTCTGCTAGTAACAACATGTTTGAAGAGTGATTTAGGTTGAATA
GTCCCTGCGAGGTTTAATCTCCAAGCTCCCGGGATGGGTACTAGGCGGTT
GGCGGACGAGgagtatgtgcggacgggacctccgaagaCAGACCATTAGA
GAGactcttttgctatttttcctcttgaaatcaaaaaatttcctaaaaat
tgtgaattttccgacccttcgAGAGACttttggaaggtgaaaaaaacaga
tgagatggagtttttatataagatactttaataattagTCATTTGAAGTT
ATAAatatgacgcgttctttagaaaaagtagcaaaattattttattactg
gttaacgaccaaccaaatcaaatcaaataagagcttgtaaaactccatct
cgtcccaaaaaaaaaccgacccttatcgTCCACACATGACCAGCATCCAT
TTTCGCCTAAATACTAATTAATAGTACTTAGATAGTTAAGCCGTTTTATC
CGGGAAatctttttttggattttgttatCACAGGGGAGATTCCCTTTTAT
CAAATTTAGGGAAAATAAACATTTCTCGTGAATTTCTATTGTTGTcatct
tttctattttcttattacattaatctcaggtaggtccattcagcatgtag
cttgtttagcctcaaattgttctttattttgactAAATTAGCTTTGTACC
CTGATTTCACTAATTAGACACCGCTCAATAGTCTGTAAAAGATTTGTTCg
tatatttttgtgtttttgagcaTCATTGTTGATATAGAATTTTTCCAAAT
TAAGAATAAAAGGATTGTAGCAAAAAAGCAATATCTTtaagcaaacaaaa
ttataacaaTAGGCCACAAGCAATTtgaaacattgaattttttttcatat
ttttactaCCTCATCTCATTAACTGATTTGGTCATTTTTCTACACATGGa
tgttaaatttgaaaatgccaAACAATTGCTGGCGCAATAACACATCATTT
AGGTTCCTATGTTTCGTTATCCTCAAGGTTGCTAAGCTAAGTTGCTTTAA
TCTCTAACATTTTCCAGGGCTAAAAATCAGCAGAGAGGTTCATTACAAAA
CAAAGTAAACCAAGTGATAAAGGGAATTTTATAATTCggtttttaatttg
ataaaacGATTTGTATGTTGGGTATTTTTCACGGTTATCTTTCACGGTGA
TGTTAATTCAAATGGAAAATCTTCGTTGTATTTGTTTTTGGCTTAAGAAA
ACAGTTTCAAGATCTactcaacggattagaataggtggattaacttctct
cgttgctcccaagagagatccattgtcttcttattgttacaagaaaaatc
tgtaaatgactctgcgcactcctcgtttagttttttcattgtttttataa
gaacaattttccaatttatacAGTTTCGAAAACGAATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtacaacttatcaagttttaattgct
agcaaactcgtaaaaaagtttgataacctaacgaggagtgttttctatga
gttcttaatccacctattctaatccgttgatcTACTATAACTTGTGCGTA
gcttgaattttgaaagataGGATTTTTAATTATGCTTCTTGTCATCTTGT
GAGCTTGCGATGGCTATCATCAGCTTTTGAACAAATGGAATCCCTCCCAT
AAAAGAGTATTTATAATTTGGTTTTCTTCTTGGGttacaaaaaatagaaa
aacatttgaACCTAATTTAGGATCAAggtcttgaaaaaatgaaaaagaga
tttattttgaagataAGTTACTCGTCTGTAATGGATTTAGTGTTGGATTA
AATAATGTGAATAGGTCTGTTTTTctcttcaaacattttcattttctttt
ttcgacCCAACTTTTTACGATGAATTCCAATATCCAACCTGGTTTTTCAA
GACTCGTTTCATTTCATTCCATTCTTAGATGGGATAATCCTTAAGATAAA
TTTGTAAAGAGAAAATACTTCCGTCTTTTGATATGAACCATTCAATCATC
AACTTGAGCACAAAGCAGTTAaatgatttgaaatttgtatGACCAGAAAT
AGGATAATTTGGTTTCACGCATGCGTAAGAGGTACAACGTTCCCATTCAT
TTGTANTTTGTATGACCAGAAATAGGATAGTTTGGTTTCACGCATGCGTA
AGAGGTAACGTTCCCATTCATTTGTAGAATTAAATCGCTTTAGTCGTGTT
TGTGCCAAAGGTGACACTTATGCATGCACCTATGTTATGGATGATGTTTA
AGTTTTCTAACAGATCTTCCCTGAGATCTTCCCATTCCAATTGAAAACGA
AGAAgtgtgaaaatgaaataaactaGCCGCTGATCCGAAAGCCACTATAT
TCTCCTTTCGACTGATAAAGCGAGAAAAACTCATAAAAATTTAACtaatt
attttttagctttgaGAGTAACGTTTTCccgaaaaacaatttttaatttg
aatattagactttgaaaaaaaactcgAATAAAACAAGGGACATGATAAAA
CTTTATCGATTCGGGGAACATTACGAAGATACAAGCTTTATCATCAAACT
CTTCAATATCGAGACAATAAAAGGAGAGAGTCATGCGTGTACAATCTTTA
CTaccttttgatttgttttacgacatctatttttgattttttttcaggaa
tggTTCGCAAGAACAAGAAGATCTCCATCAACGTCAGAGGGACTGTTTAC
GAAACGTTCGAAGAAACGCTGCAACGTTTTCCACACACACTCCTCGGTGA
TCCCACCTTACGTATCTCGCACTACGACGTCCAACGCAACTCTCTTTATT
TCGATAACACGTGTGAAGCTTTCGacgccattttgttttattatcaaTCG
AACGGTTGCTTGGTGCGACCGCCCTGGGTTCCCatggaaaaattcgaatt
cgaatgtttatttttcaaattgggTGAAAACGCGATCAAATCGATGAAAG
AACGTGAAGGTTATGATACgcagaaaaaagtgacggtTAAAAACGAACGT
AAAACGTGTCGGCGTAAATTGTGGAATTTTCTGGAGAAACCAGAATCGTC
GTTGATGTCGAGATTGTATACTTTCTTATCACTGATGATGGTCTTTTTCT
CCATCACGTTGGACTGTTTTGAAACCACTTTACCGGTACTGCCGAGCGAC
TACGACATCATGCAAGATAACTGGGAGAAAACCAAACTTTCTTTGAACAC
TTTTTTCGCTGCCGAATTCATCATCCGATTTTCGGCATGTCCGTACCGAC
GGAAATTCTGTAAAGCTTTCTTGAATATTGTTGACTTTTTCGCCATTTTC
CCttcatttttgacgtattttttaGACCGTGAAAACACGCGTAGTATAAT
GTTTGTGCGGGTGTTACGTACGTTACGTGTCTTACGTTTGATACGcttat
caaaaagttttcaaacgCTCTCCGTTGTACTTCATATATTGGTAAAAAGT
TTGGCAGATTTACTAACGCTCATATTTTGCATGTTAATCTCGTGTACAAT
TTTTGGGAGCATTATATACTATGCAGAACATTTCAGTGAAAGCCCTGATC
AACGAACTTCGCAAATATCCAGTATACCTGAAGGAATGTATTTTGCCATG
CAAACAGTTGTCTCTATTGGTTACGGAGATATTGTCCCATCTTCGTTTGC
TGGTAAAATTACTACAGCCATGACGGCTATTGTAGGGGCGTTAACAATGA
CTGTTCCTCTCCTTTCGTTGGGCGGCAAATATTTCGCCACCTACACCAAG
ACTTTTGATGTCAATTTGAGCGCCGACCTTATCAACACTCCAGGACCGAA
CGTTCAAAACGAAGAAGCGAAGAAGAGAGAACTTAACAAAACTACTAATG
ACttaaaagatatttaaaaaacttattaatttattttatatatATGATAT
ATTCTCTATATTTTACaatcaacatttttataaaaaagacaatcaaatat
ttgaaaattgaatcagCGTTGAActcaatttttcaacaaaaaaatagttt
tgctaAAATTCAAGCTTGTCTTTAAAGTGAAATGTACCATTTGTTAGCAC
TTATAAAGGTGGTTCAATGCATAGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004241-exon-sc0000041-1491911889:366320..366341 | TCONS_00004241-exon-sc0000041-1491911889:366320..366341 | Clytia hemisphaerica | exon |
| TCONS_00004241-exon-sc0000041-1510915933:366320..366341 | TCONS_00004241-exon-sc0000041-1510915933:366320..366341 | Clytia hemisphaerica | exon |
| TCONS_00004241-exon-sc0000041-1575043694:366320..366341 | TCONS_00004241-exon-sc0000041-1575043694:366320..366341 | Clytia hemisphaerica | exon |
| TCONS_00004241-exon-sc0000041-1491911889:369617..371047 | TCONS_00004241-exon-sc0000041-1491911889:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004241-exon-sc0000041-1510915933:369617..371047 | TCONS_00004241-exon-sc0000041-1510915933:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004241-exon-sc0000041-1575043694:369617..371047 | TCONS_00004241-exon-sc0000041-1575043694:369617..371047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:366320..371047 + |
Blast
BLAST of TCONS_00004241 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 3.250e-53 Identity = 132/407 (32.43%), Postives = 221/407 (54.30%), Query Frame = 1
Query: 40 KKISINVRGTVYETFEETLQRFPHTLLGDPTLRISHYDVQRNSLYFDNTCEAFDAILFYYQSNGCLVRPPWVPMXXXXXXXXXXXXXXNAIKSMKEREGYDTQKKVTVKNERKTCRRKLWNFLEKPESSLMSRLYTFLSLMMVFFSITLDCFETTLPVLPSDYDIMQ--DNWEKTKLSLNT----------------FFAAEFIIRFSACPYRRKFCKAFLNIVDFFAIFPSFLTYFLD---------RENTRSIMFXXXXXXXXXXXXXXXSKSFQTLSVVLHILVKSLADLLTLIFCMLISCTIFGSIIYYAEHFSESPDQRTSQISSIPEGMYFAMQTVVSIGYGDIVPSSFAGKITTAMTAIVGALTMTVPLLSLGGKYFATYTKTFDVNLSADLINTPGPNV 1179
+++ IN+ G +ET +TL +FP+TLLG+P R+ ++D RN +FD +FDAIL+YYQS G L RP VP++ F E F++LGE A++ +E EG+ +++ + K +R++W E PESS +R+ +S+M++ SI + C E TLP L D D + T + N+ +F+ E ++RF ACP + F K +N +D AI P F+T + E S+ +RV+R +RV R+ +LS+ + L ++ L S+ +L LIF + I +F S +Y+AE ++ S SSIP+ ++A+ ++ ++GYGD+ P + GKI ++ AI G LT+ +P+ + + Y + + A L++ PN+
Sbjct: 37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLP--EKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE-TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE-----AEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLHVSSPNL 435
The following BLAST results are available for this feature:
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