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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004240 ID=TCONS_00004240|Name=TCONS_00004240|organism=Clytia hemisphaerica|type=transcript|length=1706bp
gttttcttctttttcgtctTTTCTATTGTGTTCGTTACATTTGTAACGTT
TGATGTGTAAATTATTTCCATCCATCATCAATATGTTACCATGGTAACAA
GTTCAATGAAAGATCTCATACATTGTAAATGTCTCCtctataaaattttg
aaaaagtgaacaTGTGAACTGAAACTTGTcaaaattataaagtttttgaa
gTTCAACATGGCGTTTAAGAAAGATTGAAGTGTCGAGTAGTCATTGCTGG
TGCTTTGTTTactaaaagaaaaaaggaatggTTCGCAAGAACAAGAAGAT
CTCCATCAACGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACGCTGC
AACGTTTTCCACACACACTCCTCGGTGATCCCACCTTACGTATCTCGCAC
TACGACGTCCAACGCAACTCTCTTTATTTCGATAACACGTGTGAAGCTTT
CGacgccattttgttttattatcaaTCGAACGGTTGCTTGGTGCGACCGC
CCTGGGTTCCCatggaaaaattcgaattcgaatgtttatttttcaaattg
ggTGAAAACGCGATCAAATCGATGAAAGAACGTGAAGGTTATGATACgca
gaaaaaagtgacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAATTGT
GGAATTTTCTGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTATACT
TTCTTATCACTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTTTTGA
AACCACTTTACCGGTACTGCCGAGCGACTACGACATCATGCAAGATAACT
GGGAGAAAACCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATTCATC
ATCCGATTTTCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTTTCTT
GAATATTGTTGACTTTTTCGCCATTTTCCCttcatttttgacgtattttt
taGACCGTGAAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACGTACG
TTACGTGTCTTACGTTTGATACGcttatcaaaaagttttcaaacgCTCTC
CGTTGTACTTCATATATTGGTAAAAAGTTTGGCAGATTTACTAACGCTCA
TATTTTGCATGTTAATCTCGTGTACAATTTTTGGGAGCATTATATACTAT
GCAGAACATTTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATATCCAG
TATACCTGAAGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATTGGTT
ACGGAGATATTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGCCATG
ACGGCTATTGTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGTTGGG
CGGCAAATATTTCGCCACCTACACCAAGACTTTTGATGTCAATTTGAGCG
CCGACCTTATCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGCGAAG
AAGAGAGAACTTAACAAAACTACTAATGACttaaaagatatttaaaaaac
ttattaatttattttatatatATGATATATTCTCTATATTTTACaatcaa
catttttataaaaaagacaatcaaatatttgaaaattgaatcagCGTTGA
ActcaatttttcaacaaaaaaatagttttgctaAAATTCAAGCTTGTCTT
TAAAGTGAAATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAATGCAT
AGACTT Run BLAST on NCBI transcript from alignment at sc0000041:363973..371047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004240 ID=TCONS_00004240|Name=TCONS_00004240|organism=Clytia hemisphaerica|type=transcript|length=7075bp|location=Sequence derived from alignment at sc0000041:363973..371047+ (Clytia hemisphaerica)
gttttcttctttttcgtctTTTCTATTGTGTTCGTTACATTTGTAACGTT
TGATGTGTAAATTATTTCCATCCATCATCAATATGTTACCATGGTAACAA
GTTCAATGAAAGATCTCATACATTGTAAATGTCTCCtctataaaattttg
aaaaagtgaacaTGTGAACTGAAACTTGTcaaaattataaagtttttgaa
gTTCAACATGGCGTTTAAGAAAGATTGAAGTGTCGAGTAGTCATTGCTGG
TGCTTTGTTTactaaaagaaaaaaggttGGTCGAATTAGCATTTCTTCTT
CAAGAAAGCGGAAACAAACAAAACTTACTTATAACTAAAAGTAAGTTTTG
TTTGCTTCCGTCAATTTGGCATGTTTCCGACCAATGTAGTCCACTTATTA
TTTTTCTGTACAATGTTGATATAAAGGTGGCAAAACCTTACTTCAATGAT
ATCTTTTCTTGGacactttcattttctaatgACACGAGTTTCATTAAAAC
AACCGTACTGTTTATAAAAGAGCGTGAGATTCTAAagtattacacgtttt
tttttataagaacaaactatataagaacatactaggctttggagacttaa
aaacatgcaatttcttaagaaattacatcaaaatgctcaaaaaatgctga
aaataagaacattttaagaacatttttaggctNNAGTATCAAACTTGAAC
TTGACATGAAGCCAATTGAAGTTTGAAATACTATCAGATTAAATACgagt
aatgaaaattttagcatgACTCTATTTGGCCTGTGGATGTACccaacata
attttttctctcCATAGATTTGGACTTGGTCTTGAAATTTCACaagtttt
tctaattttgattacCTTTGTCTTTTCCTTAACACTGCCAAATTATCTTG
TCTTATGAGTACTTGAAATACTTCGAATCATCAACCTTTGTACGAAAATT
gcctttaaatttttaaatttagaatttgcgttcaaaagacAATCTGCTAA
TCTTCAGAGATCTtgactttcatttcatcatggatattcttaactttttg
ggaaaaatcatctTAAAACAATCTTACGGTATTtttaggttaggatccaa
atTCAACCACACACCTGACGAACAAAATGACATTATTGTAAAAGTAGTGA
TTCTTACTGGGATTAATCGGTAATTTACAGCTCTAAAAATGATATTCTGT
TGNTAGTGATCCTTACTGGGATTAATCGGTAATTTACAGCTCTAAAAATG
GTATTCTGTTGCCAAATTCATGAtgaattcataattttttggcCCATTTC
ATTACGAAGACTCTCATaagatatgttcttataaaaaaacgtgtacgggT
TTACGATTGCCTTAAAAAAGGACACGTTtcggtacacgtttttttataag
aagaaactataaaggaacataaggcttcaatggcaaaaaatgttaagaac
aagctaagaacattttaaggctttgtggactcaaaaacagccaatttctt
atagaaaaatgggTTAAAAtagtcacaaaatggtgaacattttgagaaca
tttttagtcttgaaacccaaaaagttaagaacatccgaaggcttcaaaaa
aattttctttggatgTTGTGTATTTCACAATGTCACCCTTTGCAAGCAGA
GGGAAAATTAGTAATTCCTTTGCTGACTAGACGAAAACTcttgaaaaatt
tcgaaattatcAGGATGCTCTTCACCTACTAAACTTTAACAATTGCAATA
TGTTATTAAAGTATATTCGCCAACCCTGGGGAAGTATTTTAACTTTTGAC
TGAAACTTTAAACCAAAACTTTAAACACTtcttgaaatagaactttagtT
TTTAGATACCATATGCTAAGTACATTTACAAGGGTGCTACAATAGAAGAT
TAGTAACGAAGAAATATTATAACATTTTGATTTGAACTAGTCTTGAATAT
aattcagaaaaaacttttcaaggTCAAATtcccaaaactctcaaattaca
ccatctttttaatttatgatttataagactttcctgaaaataatttcttt
gcAATAAATATGTTGTAGGTAAAGAAAAGGTTGTGCGTTGTGCTGTCTAG
TGCGAATGGCTTGACAGAAGATGTTGTCTTAAAAACACAGTCTCATTCTT
GTAACCAGCTTGAAAGACAGATTCCTTTTTGACATCTAACTTCTTTGTTT
GCATACAGCAGATTGAGCAAGAGGAGATCGAGTCACATATGGTCTTTCTC
CCTCATTTCCTTAACTTTCACGTTTTACTATTATTTTAAACTTGAGCCAA
ATTTTACAAGAGTAGTATTTTAACTTCGATGTGAAATTGACTTTTTATGC
TTACTAGTTTCAACAAGAGGTATGAAATAGGTGCCTTCAGTTTGAAGGTT
TGTTTCTGCTAGTAACAACATGTTTGAAGAGTGATTTAGGTTGAATAGTC
CCTGCGAGGTTTAATCTCCAAGCTCCCGGGATGGGTACTAGGCGGTTGGC
GGACGAGgagtatgtgcggacgggacctccgaagaCAGACCATTAGAGAG
actcttttgctatttttcctcttgaaatcaaaaaatttcctaaaaattgt
gaattttccgacccttcgAGAGACttttggaaggtgaaaaaaacagatga
gatggagtttttatataagatactttaataattagTCATTTGAAGTTATA
Aatatgacgcgttctttagaaaaagtagcaaaattattttattactggtt
aacgaccaaccaaatcaaatcaaataagagcttgtaaaactccatctcgt
cccaaaaaaaaaccgacccttatcgTCCACACATGACCAGCATCCATTTT
CGCCTAAATACTAATTAATAGTACTTAGATAGTTAAGCCGTTTTATCCGG
GAAatctttttttggattttgttatCACAGGGGAGATTCCCTTTTATCAA
ATTTAGGGAAAATAAACATTTCTCGTGAATTTCTATTGTTGTcatctttt
ctattttcttattacattaatctcaggtaggtccattcagcatgtagctt
gtttagcctcaaattgttctttattttgactAAATTAGCTTTGTACCCTG
ATTTCACTAATTAGACACCGCTCAATAGTCTGTAAAAGATTTGTTCgtat
atttttgtgtttttgagcaTCATTGTTGATATAGAATTTTTCCAAATTAA
GAATAAAAGGATTGTAGCAAAAAAGCAATATCTTtaagcaaacaaaatta
taacaaTAGGCCACAAGCAATTtgaaacattgaattttttttcatatttt
tactaCCTCATCTCATTAACTGATTTGGTCATTTTTCTACACATGGatgt
taaatttgaaaatgccaAACAATTGCTGGCGCAATAACACATCATTTAGG
TTCCTATGTTTCGTTATCCTCAAGGTTGCTAAGCTAAGTTGCTTTAATCT
CTAACATTTTCCAGGGCTAAAAATCAGCAGAGAGGTTCATTACAAAACAA
AGTAAACCAAGTGATAAAGGGAATTTTATAATTCggtttttaatttgata
aaacGATTTGTATGTTGGGTATTTTTCACGGTTATCTTTCACGGTGATGT
TAATTCAAATGGAAAATCTTCGTTGTATTTGTTTTTGGCTTAAGAAAACA
GTTTCAAGATCTactcaacggattagaataggtggattaacttctctcgt
tgctcccaagagagatccattgtcttcttattgttacaagaaaaatctgt
aaatgactctgcgcactcctcgtttagttttttcattgtttttataagaa
caattttccaatttatacAGTTTCGAAAACGAATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtacaacttatcaagttttaattgctagc
aaactcgtaaaaaagtttgataacctaacgaggagtgttttctatgagtt
cttaatccacctattctaatccgttgatcTACTATAACTTGTGCGTAgct
tgaattttgaaagataGGATTTTTAATTATGCTTCTTGTCATCTTGTGAG
CTTGCGATGGCTATCATCAGCTTTTGAACAAATGGAATCCCTCCCATAAA
AGAGTATTTATAATTTGGTTTTCTTCTTGGGttacaaaaaatagaaaaac
atttgaACCTAATTTAGGATCAAggtcttgaaaaaatgaaaaagagattt
attttgaagataAGTTACTCGTCTGTAATGGATTTAGTGTTGGATTAAAT
AATGTGAATAGGTCTGTTTTTctcttcaaacattttcattttcttttttc
gacCCAACTTTTTACGATGAATTCCAATATCCAACCTGGTTTTTCAAGAC
TCGTTTCATTTCATTCCATTCTTAGATGGGATAATCCTTAAGATAAATTT
GTAAAGAGAAAATACTTCCGTCTTTTGATATGAACCATTCAATCATCAAC
TTGAGCACAAAGCAGTTAaatgatttgaaatttgtatGACCAGAAATAGG
ATAATTTGGTTTCACGCATGCGTAAGAGGTACAACGTTCCCATTCATTTG
TANTTTGTATGACCAGAAATAGGATAGTTTGGTTTCACGCATGCGTAAGA
GGTAACGTTCCCATTCATTTGTAGAATTAAATCGCTTTAGTCGTGTTTGT
GCCAAAGGTGACACTTATGCATGCACCTATGTTATGGATGATGTTTAAGT
TTTCTAACAGATCTTCCCTGAGATCTTCCCATTCCAATTGAAAACGAAGA
AgtgtgaaaatgaaataaactaGCCGCTGATCCGAAAGCCACTATATTCT
CCTTTCGACTGATAAAGCGAGAAAAACTCATAAAAATTTAACtaattatt
ttttagctttgaGAGTAACGTTTTCccgaaaaacaatttttaatttgaat
attagactttgaaaaaaaactcgAATAAAACAAGGGACATGATAAAACTT
TATCGATTCGGGGAACATTACGAAGATACAAGCTTTATCATCAAACTCTT
CAATATCGAGACAATAAAAGGAGAGAGTCATGCGTGTACAATCTTTACTa
ccttttgatttgttttacgacatctatttttgattttttttcaggaatgg
TTCGCAAGAACAAGAAGATCTCCATCAACGTCAGAGGGACTGTTTACGAA
ACGTTCGAAGAAACGCTGCAACGTTTTCCACACACACTCCTCGGTGATCC
CACCTTACGTATCTCGCACTACGACGTCCAACGCAACTCTCTTTATTTCG
ATAACACGTGTGAAGCTTTCGacgccattttgttttattatcaaTCGAAC
GGTTGCTTGGTGCGACCGCCCTGGGTTCCCatggaaaaattcgaattcga
atgtttatttttcaaattgggTGAAAACGCGATCAAATCGATGAAAGAAC
GTGAAGGTTATGATACgcagaaaaaagtgacggtTAAAAACGAACGTAAA
ACGTGTCGGCGTAAATTGTGGAATTTTCTGGAGAAACCAGAATCGTCGTT
GATGTCGAGATTGTATACTTTCTTATCACTGATGATGGTCTTTTTCTCCA
TCACGTTGGACTGTTTTGAAACCACTTTACCGGTACTGCCGAGCGACTAC
GACATCATGCAAGATAACTGGGAGAAAACCAAACTTTCTTTGAACACTTT
TTTCGCTGCCGAATTCATCATCCGATTTTCGGCATGTCCGTACCGACGGA
AATTCTGTAAAGCTTTCTTGAATATTGTTGACTTTTTCGCCATTTTCCCt
tcatttttgacgtattttttaGACCGTGAAAACACGCGTAGTATAATGTT
TGTGCGGGTGTTACGTACGTTACGTGTCTTACGTTTGATACGcttatcaa
aaagttttcaaacgCTCTCCGTTGTACTTCATATATTGGTAAAAAGTTTG
GCAGATTTACTAACGCTCATATTTTGCATGTTAATCTCGTGTACAATTTT
TGGGAGCATTATATACTATGCAGAACATTTCAGTGAAAGCCCTGATCAAC
GAACTTCGCAAATATCCAGTATACCTGAAGGAATGTATTTTGCCATGCAA
ACAGTTGTCTCTATTGGTTACGGAGATATTGTCCCATCTTCGTTTGCTGG
TAAAATTACTACAGCCATGACGGCTATTGTAGGGGCGTTAACAATGACTG
TTCCTCTCCTTTCGTTGGGCGGCAAATATTTCGCCACCTACACCAAGACT
TTTGATGTCAATTTGAGCGCCGACCTTATCAACACTCCAGGACCGAACGT
TCAAAACGAAGAAGCGAAGAAGAGAGAACTTAACAAAACTACTAATGACt
taaaagatatttaaaaaacttattaatttattttatatatATGATATATT
CTCTATATTTTACaatcaacatttttataaaaaagacaatcaaatatttg
aaaattgaatcagCGTTGAActcaatttttcaacaaaaaaatagttttgc
taAAATTCAAGCTTGTCTTTAAAGTGAAATGTACCATTTGTTAGCACTTA
TAAAGGTGGTTCAATGCATAGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004240-exon-sc0000041-1491911889:363973..364247 | TCONS_00004240-exon-sc0000041-1491911889:363973..364247 | Clytia hemisphaerica | exon |
| TCONS_00004240-exon-sc0000041-1510915933:363973..364247 | TCONS_00004240-exon-sc0000041-1510915933:363973..364247 | Clytia hemisphaerica | exon |
| TCONS_00004240-exon-sc0000041-1575043694:363973..364247 | TCONS_00004240-exon-sc0000041-1575043694:363973..364247 | Clytia hemisphaerica | exon |
| TCONS_00004240-exon-sc0000041-1491911889:369617..371047 | TCONS_00004240-exon-sc0000041-1491911889:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004240-exon-sc0000041-1510915933:369617..371047 | TCONS_00004240-exon-sc0000041-1510915933:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004240-exon-sc0000041-1575043694:369617..371047 | TCONS_00004240-exon-sc0000041-1575043694:369617..371047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:363973..371047 + |
Blast
BLAST of TCONS_00004240 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 6.307e-52 Identity = 132/405 (32.59%), Postives = 219/405 (54.07%), Query Frame = 2
Query: 299 ISINVRGTVYETFEETLQRFPHTLLGDPTLRISHYDVQRNSLYFDNTCEAFDAILFYYQSNGCLVRPPWVPMXXXXXXXXXXXXXXNAIKSMKEREGYDTQKKVTVKNERKTCRRKLWNFLEKPESSLMSRLYTFLSLMMVFFSITLDCFETTLPVLPSDYDIMQ--DNWEKTKLSLNT----------------FFAAEFIIRFSACPYRRKFCKAFLNIVDFFAIFPSFLTYFLD---------RENTRSIMFXXXXXXXXXXXXXXXSKSFQTLSVVLHILVKSLADLLTLIFCMLISCTIFGSIIYYAEHFSESPDQRTSQISSIPEGMYFAMQTVVSIGYGDIVPSSFAGKITTAMTAIVGALTMTVPLLSLGGKYFATYTKTFDVNLSADLINTPGPNV 1432
+ IN+ G +ET +TL +FP+TLLG+P R+ ++D RN +FD +FDAIL+YYQS G L RP VP++ F E F++LGE A++ +E EG+ +++ + K +R++W E PESS +R+ +S+M++ SI + C E TLP L D D + T + N+ +F+ E ++RF ACP + F K +N +D AI P F+T + E S+ +RV+R +RV R+ +LS+ + L ++ L S+ +L LIF + I +F S +Y+AE ++ S SSIP+ ++A+ ++ ++GYGD+ P + GKI ++ AI G LT+ +P+ + + Y + + A L++ PN+
Sbjct: 39 VVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLP--EKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE-TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE-----AEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLHVSSPNL 435
The following BLAST results are available for this feature:
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