|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004239 ID=TCONS_00004239|Name=TCONS_00004239|organism=Clytia hemisphaerica|type=transcript|length=1574bp
AAATGCTACCTCTAGTTGTGTTGAAGAGAGGACGAGAAAGATTTGTTGGT
CTGAACTGAAGAAAGAGTGGAATGTTTTCAAGATGCCAGGTCAGAAAAGC
AAGAAGAAAATGATGCCAAATATTTCACGAATGTTGTACCAAGgaatggT
TCGCAAGAACAAGAAGATCTCCATCAACGTCAGAGGGACTGTTTACGAAA
CGTTCGAAGAAACGCTGCAACGTTTTCCACACACACTCCTCGGTGATCCC
ACCTTACGTATCTCGCACTACGACGTCCAACGCAACTCTCTTTATTTCGA
TAACACGTGTGAAGCTTTCGacgccattttgttttattatcaaTCGAACG
GTTGCTTGGTGCGACCGCCCTGGGTTCCCatggaaaaattcgaattcgaa
tgtttatttttcaaattgggTGAAAACGCGATCAAATCGATGAAAGAACG
TGAAGGTTATGATACgcagaaaaaagtgacggtTAAAAACGAACGTAAAA
CGTGTCGGCGTAAATTGTGGAATTTTCTGGAGAAACCAGAATCGTCGTTG
ATGTCGAGATTGTATACTTTCTTATCACTGATGATGGTCTTTTTCTCCAT
CACGTTGGACTGTTTTGAAACCACTTTACCGGTACTGCCGAGCGACTACG
ACATCATGCAAGATAACTGGGAGAAAACCAAACTTTCTTTGAACACTTTT
TTCGCTGCCGAATTCATCATCCGATTTTCGGCATGTCCGTACCGACGGAA
ATTCTGTAAAGCTTTCTTGAATATTGTTGACTTTTTCGCCATTTTCCCtt
catttttgacgtattttttaGACCGTGAAAACACGCGTAGTATAATGTTT
GTGCGGGTGTTACGTACGTTACGTGTCTTACGTTTGATACGcttatcaaa
aagttttcaaacgCTCTCCGTTGTACTTCATATATTGGTAAAAAGTTTGG
CAGATTTACTAACGCTCATATTTTGCATGTTAATCTCGTGTACAATTTTT
GGGAGCATTATATACTATGCAGAACATTTCAGTGAAAGCCCTGATCAACG
AACTTCGCAAATATCCAGTATACCTGAAGGAATGTATTTTGCCATGCAAA
CAGTTGTCTCTATTGGTTACGGAGATATTGTCCCATCTTCGTTTGCTGGT
AAAATTACTACAGCCATGACGGCTATTGTAGGGGCGTTAACAATGACTGT
TCCTCTCCTTTCGTTGGGCGGCAAATATTTCGCCACCTACACCAAGACTT
TTGATGTCAATTTGAGCGCCGACCTTATCAACACTCCAGGACCGAACGTT
CAAAACGAAGAAGCGAAGAAGAGAGAACTTAACAAAACTACTAATGACtt
aaaagatatttaaaaaacttattaatttattttatatatATGATATATTC
TCTATATTTTACaatcaacatttttataaaaaagacaatcaaatatttga
aaattgaatcagCGTTGAActcaatttttcaacaaaaaaatagttttgct
aAAATTCAAGCTTGTCTTTAAAGTGAAATGTACCATTTGTTAGCACTTAT
AAAGGTGGTTCAATGCATAGACTT Run BLAST on NCBI transcript from alignment at sc0000041:363651..371047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004239 ID=TCONS_00004239|Name=TCONS_00004239|organism=Clytia hemisphaerica|type=transcript|length=7397bp|location=Sequence derived from alignment at sc0000041:363651..371047+ (Clytia hemisphaerica)
AAATGCTACCTCTAGTTGTGTTGAAGAGAGGACGAGAAAGATTTGTTGGT
CTGAACTGAAGAAAGAGTGGAATGTTTTCAAGATGCCAGGTCAGAAAAGC
AAGAAGAAAATGATGCCAAATATTTCACGAATGTTGTACCAAGGTATTCA
TTTCAAGATTGAATTGGTGCATCTTTTCTGTTTCACGAAAATCTGTAATT
CTATCACCATTAAGAATTCTGATATATATGACCGCTTGAACCTTGTTGTG
TAGCGGTAAATGGTCTTTGTGTAATGTACCTCCAAGTTACGAACACGTAG
TTTCTTTCTTATGTGGTTcaatgttttcttctttttcgtctTTTCTATTG
TGTTCGTTACATTTGTAACGTTTGATGTGTAAATTATTTCCATCCATCAT
CAATATGTTACCATGGTAACAAGTTCAATGAAAGATCTCATACATTGTAA
ATGTCTCCtctataaaattttgaaaaagtgaacaTGTGAACTGAAACTTG
TcaaaattataaagtttttgaagTTCAACATGGCGTTTAAGAAAGATTGA
AGTGTCGAGTAGTCATTGCTGGTGCTTTGTTTactaaaagaaaaaaggtt
GGTCGAATTAGCATTTCTTCTTCAAGAAAGCGGAAACAAACAAAACTTAC
TTATAACTAAAAGTAAGTTTTGTTTGCTTCCGTCAATTTGGCATGTTTCC
GACCAATGTAGTCCACTTATTATTTTTCTGTACAATGTTGATATAAAGGT
GGCAAAACCTTACTTCAATGATATCTTTTCTTGGacactttcattttcta
atgACACGAGTTTCATTAAAACAACCGTACTGTTTATAAAAGAGCGTGAG
ATTCTAAagtattacacgtttttttttataagaacaaactatataagaac
atactaggctttggagacttaaaaacatgcaatttcttaagaaattacat
caaaatgctcaaaaaatgctgaaaataagaacattttaagaacattttta
ggctNNAGTATCAAACTTGAACTTGACATGAAGCCAATTGAAGTTTGAAA
TACTATCAGATTAAATACgagtaatgaaaattttagcatgACTCTATTTG
GCCTGTGGATGTACccaacataattttttctctcCATAGATTTGGACTTG
GTCTTGAAATTTCACaagtttttctaattttgattacCTTTGTCTTTTCC
TTAACACTGCCAAATTATCTTGTCTTATGAGTACTTGAAATACTTCGAAT
CATCAACCTTTGTACGAAAATTgcctttaaatttttaaatttagaatttg
cgttcaaaagacAATCTGCTAATCTTCAGAGATCTtgactttcatttcat
catggatattcttaactttttgggaaaaatcatctTAAAACAATCTTACG
GTATTtttaggttaggatccaaatTCAACCACACACCTGACGAACAAAAT
GACATTATTGTAAAAGTAGTGATTCTTACTGGGATTAATCGGTAATTTAC
AGCTCTAAAAATGATATTCTGTTGNTAGTGATCCTTACTGGGATTAATCG
GTAATTTACAGCTCTAAAAATGGTATTCTGTTGCCAAATTCATGAtgaat
tcataattttttggcCCATTTCATTACGAAGACTCTCATaagatatgttc
ttataaaaaaacgtgtacgggTTTACGATTGCCTTAAAAAAGGACACGTT
tcggtacacgtttttttataagaagaaactataaaggaacataaggcttc
aatggcaaaaaatgttaagaacaagctaagaacattttaaggctttgtgg
actcaaaaacagccaatttcttatagaaaaatgggTTAAAAtagtcacaa
aatggtgaacattttgagaacatttttagtcttgaaacccaaaaagttaa
gaacatccgaaggcttcaaaaaaattttctttggatgTTGTGTATTTCAC
AATGTCACCCTTTGCAAGCAGAGGGAAAATTAGTAATTCCTTTGCTGACT
AGACGAAAACTcttgaaaaatttcgaaattatcAGGATGCTCTTCACCTA
CTAAACTTTAACAATTGCAATATGTTATTAAAGTATATTCGCCAACCCTG
GGGAAGTATTTTAACTTTTGACTGAAACTTTAAACCAAAACTTTAAACAC
TtcttgaaatagaactttagtTTTTAGATACCATATGCTAAGTACATTTA
CAAGGGTGCTACAATAGAAGATTAGTAACGAAGAAATATTATAACATTTT
GATTTGAACTAGTCTTGAATATaattcagaaaaaacttttcaaggTCAAA
Ttcccaaaactctcaaattacaccatctttttaatttatgatttataaga
ctttcctgaaaataatttctttgcAATAAATATGTTGTAGGTAAAGAAAA
GGTTGTGCGTTGTGCTGTCTAGTGCGAATGGCTTGACAGAAGATGTTGTC
TTAAAAACACAGTCTCATTCTTGTAACCAGCTTGAAAGACAGATTCCTTT
TTGACATCTAACTTCTTTGTTTGCATACAGCAGATTGAGCAAGAGGAGAT
CGAGTCACATATGGTCTTTCTCCCTCATTTCCTTAACTTTCACGTTTTAC
TATTATTTTAAACTTGAGCCAAATTTTACAAGAGTAGTATTTTAACTTCG
ATGTGAAATTGACTTTTTATGCTTACTAGTTTCAACAAGAGGTATGAAAT
AGGTGCCTTCAGTTTGAAGGTTTGTTTCTGCTAGTAACAACATGTTTGAA
GAGTGATTTAGGTTGAATAGTCCCTGCGAGGTTTAATCTCCAAGCTCCCG
GGATGGGTACTAGGCGGTTGGCGGACGAGgagtatgtgcggacgggacct
ccgaagaCAGACCATTAGAGAGactcttttgctatttttcctcttgaaat
caaaaaatttcctaaaaattgtgaattttccgacccttcgAGAGACtttt
ggaaggtgaaaaaaacagatgagatggagtttttatataagatactttaa
taattagTCATTTGAAGTTATAAatatgacgcgttctttagaaaaagtag
caaaattattttattactggttaacgaccaaccaaatcaaatcaaataag
agcttgtaaaactccatctcgtcccaaaaaaaaaccgacccttatcgTCC
ACACATGACCAGCATCCATTTTCGCCTAAATACTAATTAATAGTACTTAG
ATAGTTAAGCCGTTTTATCCGGGAAatctttttttggattttgttatCAC
AGGGGAGATTCCCTTTTATCAAATTTAGGGAAAATAAACATTTCTCGTGA
ATTTCTATTGTTGTcatcttttctattttcttattacattaatctcaggt
aggtccattcagcatgtagcttgtttagcctcaaattgttctttattttg
actAAATTAGCTTTGTACCCTGATTTCACTAATTAGACACCGCTCAATAG
TCTGTAAAAGATTTGTTCgtatatttttgtgtttttgagcaTCATTGTTG
ATATAGAATTTTTCCAAATTAAGAATAAAAGGATTGTAGCAAAAAAGCAA
TATCTTtaagcaaacaaaattataacaaTAGGCCACAAGCAATTtgaaac
attgaattttttttcatatttttactaCCTCATCTCATTAACTGATTTGG
TCATTTTTCTACACATGGatgttaaatttgaaaatgccaAACAATTGCTG
GCGCAATAACACATCATTTAGGTTCCTATGTTTCGTTATCCTCAAGGTTG
CTAAGCTAAGTTGCTTTAATCTCTAACATTTTCCAGGGCTAAAAATCAGC
AGAGAGGTTCATTACAAAACAAAGTAAACCAAGTGATAAAGGGAATTTTA
TAATTCggtttttaatttgataaaacGATTTGTATGTTGGGTATTTTTCA
CGGTTATCTTTCACGGTGATGTTAATTCAAATGGAAAATCTTCGTTGTAT
TTGTTTTTGGCTTAAGAAAACAGTTTCAAGATCTactcaacggattagaa
taggtggattaacttctctcgttgctcccaagagagatccattgtcttct
tattgttacaagaaaaatctgtaaatgactctgcgcactcctcgtttagt
tttttcattgtttttataagaacaattttccaatttatacAGTTTCGAAA
ACGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtacaac
ttatcaagttttaattgctagcaaactcgtaaaaaagtttgataacctaa
cgaggagtgttttctatgagttcttaatccacctattctaatccgttgat
cTACTATAACTTGTGCGTAgcttgaattttgaaagataGGATTTTTAATT
ATGCTTCTTGTCATCTTGTGAGCTTGCGATGGCTATCATCAGCTTTTGAA
CAAATGGAATCCCTCCCATAAAAGAGTATTTATAATTTGGTTTTCTTCTT
GGGttacaaaaaatagaaaaacatttgaACCTAATTTAGGATCAAggtct
tgaaaaaatgaaaaagagatttattttgaagataAGTTACTCGTCTGTAA
TGGATTTAGTGTTGGATTAAATAATGTGAATAGGTCTGTTTTTctcttca
aacattttcattttcttttttcgacCCAACTTTTTACGATGAATTCCAAT
ATCCAACCTGGTTTTTCAAGACTCGTTTCATTTCATTCCATTCTTAGATG
GGATAATCCTTAAGATAAATTTGTAAAGAGAAAATACTTCCGTCTTTTGA
TATGAACCATTCAATCATCAACTTGAGCACAAAGCAGTTAaatgatttga
aatttgtatGACCAGAAATAGGATAATTTGGTTTCACGCATGCGTAAGAG
GTACAACGTTCCCATTCATTTGTANTTTGTATGACCAGAAATAGGATAGT
TTGGTTTCACGCATGCGTAAGAGGTAACGTTCCCATTCATTTGTAGAATT
AAATCGCTTTAGTCGTGTTTGTGCCAAAGGTGACACTTATGCATGCACCT
ATGTTATGGATGATGTTTAAGTTTTCTAACAGATCTTCCCTGAGATCTTC
CCATTCCAATTGAAAACGAAGAAgtgtgaaaatgaaataaactaGCCGCT
GATCCGAAAGCCACTATATTCTCCTTTCGACTGATAAAGCGAGAAAAACT
CATAAAAATTTAACtaattattttttagctttgaGAGTAACGTTTTCccg
aaaaacaatttttaatttgaatattagactttgaaaaaaaactcgAATAA
AACAAGGGACATGATAAAACTTTATCGATTCGGGGAACATTACGAAGATA
CAAGCTTTATCATCAAACTCTTCAATATCGAGACAATAAAAGGAGAGAGT
CATGCGTGTACAATCTTTACTaccttttgatttgttttacgacatctatt
tttgattttttttcaggaatggTTCGCAAGAACAAGAAGATCTCCATCAA
CGTCAGAGGGACTGTTTACGAAACGTTCGAAGAAACGCTGCAACGTTTTC
CACACACACTCCTCGGTGATCCCACCTTACGTATCTCGCACTACGACGTC
CAACGCAACTCTCTTTATTTCGATAACACGTGTGAAGCTTTCGacgccat
tttgttttattatcaaTCGAACGGTTGCTTGGTGCGACCGCCCTGGGTTC
CCatggaaaaattcgaattcgaatgtttatttttcaaattgggTGAAAAC
GCGATCAAATCGATGAAAGAACGTGAAGGTTATGATACgcagaaaaaagt
gacggtTAAAAACGAACGTAAAACGTGTCGGCGTAAATTGTGGAATTTTC
TGGAGAAACCAGAATCGTCGTTGATGTCGAGATTGTATACTTTCTTATCA
CTGATGATGGTCTTTTTCTCCATCACGTTGGACTGTTTTGAAACCACTTT
ACCGGTACTGCCGAGCGACTACGACATCATGCAAGATAACTGGGAGAAAA
CCAAACTTTCTTTGAACACTTTTTTCGCTGCCGAATTCATCATCCGATTT
TCGGCATGTCCGTACCGACGGAAATTCTGTAAAGCTTTCTTGAATATTGT
TGACTTTTTCGCCATTTTCCCttcatttttgacgtattttttaGACCGTG
AAAACACGCGTAGTATAATGTTTGTGCGGGTGTTACGTACGTTACGTGTC
TTACGTTTGATACGcttatcaaaaagttttcaaacgCTCTCCGTTGTACT
TCATATATTGGTAAAAAGTTTGGCAGATTTACTAACGCTCATATTTTGCA
TGTTAATCTCGTGTACAATTTTTGGGAGCATTATATACTATGCAGAACAT
TTCAGTGAAAGCCCTGATCAACGAACTTCGCAAATATCCAGTATACCTGA
AGGAATGTATTTTGCCATGCAAACAGTTGTCTCTATTGGTTACGGAGATA
TTGTCCCATCTTCGTTTGCTGGTAAAATTACTACAGCCATGACGGCTATT
GTAGGGGCGTTAACAATGACTGTTCCTCTCCTTTCGTTGGGCGGCAAATA
TTTCGCCACCTACACCAAGACTTTTGATGTCAATTTGAGCGCCGACCTTA
TCAACACTCCAGGACCGAACGTTCAAAACGAAGAAGCGAAGAAGAGAGAA
CTTAACAAAACTACTAATGACttaaaagatatttaaaaaacttattaatt
tattttatatatATGATATATTCTCTATATTTTACaatcaacatttttat
aaaaaagacaatcaaatatttgaaaattgaatcagCGTTGAActcaattt
ttcaacaaaaaaatagttttgctaAAATTCAAGCTTGTCTTTAAAGTGAA
ATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAATGCATAGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004239-exon-sc0000041-1491911889:363651..363793 | TCONS_00004239-exon-sc0000041-1491911889:363651..363793 | Clytia hemisphaerica | exon |
| TCONS_00004239-exon-sc0000041-1510915933:363651..363793 | TCONS_00004239-exon-sc0000041-1510915933:363651..363793 | Clytia hemisphaerica | exon |
| TCONS_00004239-exon-sc0000041-1575043694:363651..363793 | TCONS_00004239-exon-sc0000041-1575043694:363651..363793 | Clytia hemisphaerica | exon |
| TCONS_00004239-exon-sc0000041-1491911889:369617..371047 | TCONS_00004239-exon-sc0000041-1491911889:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004239-exon-sc0000041-1510915933:369617..371047 | TCONS_00004239-exon-sc0000041-1510915933:369617..371047 | Clytia hemisphaerica | exon |
| TCONS_00004239-exon-sc0000041-1575043694:369617..371047 | TCONS_00004239-exon-sc0000041-1575043694:369617..371047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:363651..371047 + |
Blast
BLAST of TCONS_00004239 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 5.889e-53 Identity = 132/407 (32.43%), Postives = 220/407 (54.05%), Query Frame = 2
Query: 161 KKISINVRGTVYETFEETLQRFPHTLLGDPTLRISHYDVQRNSLYFDNTCEAFDAILFYYQSNGCLVRPPWVPMXXXXXXXXXXXXXXNAIKSMKEREGYDTQKKVTVKNERKTCRRKLWNFLEKPESSLMSRLYTFLSLMMVFFSITLDCFETTLPVLPSDYD------------------IMQDNWEKTKLSLNTFFAAEFIIRFSACPYRRKFCKAFLNIVDFFAIFPSFLTYFLD---------RENTRSIMFXXXXXXXXXXXXXXXSKSFQTLSVVLHILVKSLADLLTLIFCMLISCTIFGSIIYYAEHFSESPDQRTSQISSIPEGMYFAMQTVVSIGYGDIVPSSFAGKITTAMTAIVGALTMTVPLLSLGGKYFATYTKTFDVNLSADLINTPGPNV 1300
+++ IN+ G +ET +TL +FP+TLLG+P R+ ++D RN +FD +FDAIL+YYQS G L RP VP++ F E F++LGE A++ +E EG+ +++ + K +R++W E PESS +R+ +S+M++ SI + C E TLP L D D I D + + +F+ E ++RF ACP + F K +N +D AI P F+T + E S+ +RV+R +RV R+ +LS+ + L ++ L S+ +L LIF + I +F S +Y+AE ++ S SSIP+ ++A+ ++ ++GYGD+ P + GKI ++ AI G LT+ +P+ + + Y + + A L++ PN+
Sbjct: 37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLP--EKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE-TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE-----AEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLHVSSPNL 435
The following BLAST results are available for this feature:
|
