TCONS_00004233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004233
Unique NameTCONS_00004233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004233 ID=TCONS_00004233|Name=TCONS_00004233|organism=Clytia hemisphaerica|type=transcript|length=488bp
GAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGC
CGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACTCACTCT
GCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCATCCA
GGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCC
AGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCACACA
AATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAATGGCAA
CCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTACA
ATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTGTCT
TCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAACAT
TAAATGTCAATGATGTCGCCGAACTCCCTCAACTCCTC
Run BLAST on NCBI

protein sequence of TCONS_00004233-protein

>TCONS_00004233-protein ID=TCONS_00004233-protein|Name=TCONS_00004233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
EHRININKIKMKIFIAAVLIAACYAAEPCPNSLCKWREDGFSARVSNDHP
GFFFQCSNWIAYCFDCPANTVFDNHLRVCVNPHKSKPALPKCPKKLCKWQ
PVGALVSYPGKPTYYVQCTNSGAVCRVCPAGLVFSNGIDVCVRPASGKKH
Run BLAST on NCBI

transcript from alignment at sc0000041:330690..331528+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004233 ID=TCONS_00004233|Name=TCONS_00004233|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at sc0000041:330690..331528+ (Clytia hemisphaerica)
GAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGC
CGTTCTTATTGCTGGTAAGTTTCTTTAGTGAAACCAAAGTTTGCAAATCT
CTACTAAATGATCTTTCTGTCAATATCTAAACAATGGAAGTTCTGCCGTT
CGCCATATCTTTTTACAGCACTGGACTgaagttttgcatactttttcttt
tcagcATGCTACGCCGCAGAACCATGTCCAAACTCACTCTGCAAATGGAG
AGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCATCCAGGATTTTTCT
TCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCCAGCCAACACA
GTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCACACAAATCCAAACC
TGCACTACCAAAATGTACGTTCTATCATTACTAAATTTACTTTTTCAGCC
CACTATTCGGGAATCTAGAATTTGGTATCTTTTGCGAATCTCTTGCCCCC
TTTTCCCAACATACGTTATGGtttgaaaataataattaaaacaaaactta
ctcttgaataaaataaaatacataaataaataaaatattataaaataaat
aaattatttttctctcaaatcttAGGTCCAAAAAAATTGTGCAAATGGCA
ACCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTAC
AATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTGTC
TTCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAACA
TTAAATGTCAATGATGTCGCCGAACTCCCTCAACTCCTC

Coding sequence (CDS) from alignment at sc0000041:330690..331528+

>TCONS_00004233 ID=TCONS_00004233|Name=TCONS_00004233|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000041:330690..331528+ (Clytia hemisphaerica)
GAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGC
CGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACTCACTCT
GCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCATCCA
GGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCC
AGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCACACA
AATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAATGGCAA
CCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTACA
ATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTGTCT
TCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAACAT
TAAGAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGC
CGCCGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACTCAC
TCTGCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCAT
CCAGGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTG
CCCAGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCAC
ACAAATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAATGG
CAACCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGT
ACAATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTG
TCTTCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAA
CATTAAGAGCATCGgataaacatcaacaaaatcaaaatgaagattttcat
CGCCGCCGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACT
CACTCTGCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGAT
CATCCAGGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGA
TTGCCCAGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACC
CACACAAATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAA
TGGCAACCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTA
CGTACAATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTC
TTGTCTTCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAA
AAACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002357XLOC_002357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004233-proteinTCONS_00004233-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004233-exon-sc0000041-1491911889:330690..330753TCONS_00004233-exon-sc0000041-1491911889:330690..330753Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1510915933:330690..330753TCONS_00004233-exon-sc0000041-1510915933:330690..330753Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1575043694:330690..330753TCONS_00004233-exon-sc0000041-1575043694:330690..330753Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1491911889:330894..331103TCONS_00004233-exon-sc0000041-1491911889:330894..331103Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1510915933:330894..331103TCONS_00004233-exon-sc0000041-1510915933:330894..331103Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1575043694:330894..331103TCONS_00004233-exon-sc0000041-1575043694:330894..331103Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1491911889:331315..331528TCONS_00004233-exon-sc0000041-1491911889:331315..331528Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1510915933:331315..331528TCONS_00004233-exon-sc0000041-1510915933:331315..331528Clytia hemisphaericaexon
TCONS_00004233-exon-sc0000041-1575043694:331315..331528TCONS_00004233-exon-sc0000041-1575043694:331315..331528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:330690..331528 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.19311	1.66606	1.29924	1.20557	1.20038	0.494964	0.658316	1.53052	0.321467	0.466104	0.644152	0.254064	52.9697	68.0201	65.6587	41.0326	7.29381	5.13443	2.29759	1.89174	0.310838	0.743461	1.70423	1.42601	1.11727	0.243693	0	0.186084	0.207831	0.555614
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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