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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004233 ID=TCONS_00004233|Name=TCONS_00004233|organism=Clytia hemisphaerica|type=transcript|length=488bp GAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGC CGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACTCACTCT GCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCATCCA GGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCC AGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCACACA AATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAATGGCAA CCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTACA ATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTGTCT TCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAACAT TAAATGTCAATGATGTCGCCGAACTCCCTCAACTCCTC Run BLAST on NCBI protein sequence of TCONS_00004233-protein >TCONS_00004233-protein ID=TCONS_00004233-protein|Name=TCONS_00004233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
EHRININKIKMKIFIAAVLIAACYAAEPCPNSLCKWREDGFSARVSNDHP GFFFQCSNWIAYCFDCPANTVFDNHLRVCVNPHKSKPALPKCPKKLCKWQ PVGALVSYPGKPTYYVQCTNSGAVCRVCPAGLVFSNGIDVCVRPASGKKH Run BLAST on NCBI transcript from alignment at sc0000041:330690..331528+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004233 ID=TCONS_00004233|Name=TCONS_00004233|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at sc0000041:330690..331528+ (Clytia hemisphaerica) GAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGC
CGTTCTTATTGCTGGTAAGTTTCTTTAGTGAAACCAAAGTTTGCAAATCT
CTACTAAATGATCTTTCTGTCAATATCTAAACAATGGAAGTTCTGCCGTT
CGCCATATCTTTTTACAGCACTGGACTgaagttttgcatactttttcttt
tcagcATGCTACGCCGCAGAACCATGTCCAAACTCACTCTGCAAATGGAG
AGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCATCCAGGATTTTTCT
TCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCCAGCCAACACA
GTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCACACAAATCCAAACC
TGCACTACCAAAATGTACGTTCTATCATTACTAAATTTACTTTTTCAGCC
CACTATTCGGGAATCTAGAATTTGGTATCTTTTGCGAATCTCTTGCCCCC
TTTTCCCAACATACGTTATGGtttgaaaataataattaaaacaaaactta
ctcttgaataaaataaaatacataaataaataaaatattataaaataaat
aaattatttttctctcaaatcttAGGTCCAAAAAAATTGTGCAAATGGCA
ACCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTAC
AATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTGTC
TTCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAACA
TTAAATGTCAATGATGTCGCCGAACTCCCTCAACTCCTC Coding sequence (CDS) from alignment at sc0000041:330690..331528+ >TCONS_00004233 ID=TCONS_00004233|Name=TCONS_00004233|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000041:330690..331528+ (Clytia hemisphaerica) GAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGCCGC CGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACTCACTCT GCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCATCCA GGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTGCCC AGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCACACA AATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAATGGCAA CCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGTACA ATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTGTCT TCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAACAT TAAGAGCATCGgataaacatcaacaaaatcaaaatgaagattttcatCGC CGCCGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACTCAC TCTGCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGATCAT CCAGGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGATTG CCCAGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACCCAC ACAAATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAATGG CAACCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTACGT ACAATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTCTTG TCTTCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAAAAA CATTAAGAGCATCGgataaacatcaacaaaatcaaaatgaagattttcat CGCCGCCGTTCTTATTGCTGcATGCTACGCCGCAGAACCATGTCCAAACT CACTCTGCAAATGGAGAGAAGATGGATTTTCCGCCAGAGTCAGTAATGAT CATCCAGGATTTTTCTTCCAATGTTCCAACTGGATCGCTTATTGTTTCGA TTGCCCAGCCAACACAGTTTTCGATAACCACTTGAGAGTCTGCGTCAACC CACACAAATCCAAACCTGCACTACCAAAATGTCCAAAAAAATTGTGCAAA TGGCAACCCGTGGGAGCTTTAGTCAGCTACCCAGGAAAACCAACCTACTA CGTACAATGCACCAACTCAGGAGCTGTTTGCAGAGTCTGTCCAGCGGGTC TTGTCTTCAGCAACGGTATTGATGTTTGCGTCCGCCCAGCTTCTGGCAAA AAACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004233-exon-sc0000041-1491911889:330690..330753 | TCONS_00004233-exon-sc0000041-1491911889:330690..330753 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1510915933:330690..330753 | TCONS_00004233-exon-sc0000041-1510915933:330690..330753 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1575043694:330690..330753 | TCONS_00004233-exon-sc0000041-1575043694:330690..330753 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1491911889:330894..331103 | TCONS_00004233-exon-sc0000041-1491911889:330894..331103 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1510915933:330894..331103 | TCONS_00004233-exon-sc0000041-1510915933:330894..331103 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1575043694:330894..331103 | TCONS_00004233-exon-sc0000041-1575043694:330894..331103 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1491911889:331315..331528 | TCONS_00004233-exon-sc0000041-1491911889:331315..331528 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1510915933:331315..331528 | TCONS_00004233-exon-sc0000041-1510915933:331315..331528 | Clytia hemisphaerica | exon |
TCONS_00004233-exon-sc0000041-1575043694:331315..331528 | TCONS_00004233-exon-sc0000041-1575043694:331315..331528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000041 | supercontig | sc0000041:330690..331528 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
Term | Definition |
GO:0005576 | extracellular region |
Vocabulary: Biological Process
Term | Definition |
GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006030 |
chitin metabolic process |
cellular_component |
GO:0005576 |
extracellular region |
molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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