TCONS_00004232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004232
Unique NameTCONS_00004232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004232 ID=TCONS_00004232|Name=TCONS_00004232|organism=Clytia hemisphaerica|type=transcript|length=301bp
atttatgCAGAAATATATAtttgatcaaaaacaaaaactaacaaAGAAAT
AATATACATGTAtatcaaaatttacaaagaGACAAGAGAGAGAGGAGTTG
AGGGAGTTCGGCGAAATCGTCGACGTTTAATGTTTTTTGCCATGTTTTGA
GATTGGAGGACGGACGCAAACATCGATTCCATTTCTGAAGACAAGACCGT
CTGGACACTTTCTGCAAACAGCTCCAGTGTTGGCGCATTGAACGTAGTAG
GTTGGTTTTCCTGGGTAGCTGACTAAAGCTCCAACGGGTTGCCAATTGCA
T
Run BLAST on NCBI

transcript from alignment at sc0000041:311329..322434+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004232 ID=TCONS_00004232|Name=TCONS_00004232|organism=Clytia hemisphaerica|type=transcript|length=11106bp|location=Sequence derived from alignment at sc0000041:311329..322434+ (Clytia hemisphaerica)
atttatgCAGAAATATATAtttgatcaaaaacaaaaactaacaaAGAAAT
AATATACATGTAtatcaaaatttacaaagaGACAAGAGAGAGAGGAGTTG
AGGGAGTTCGGCGAAATCGTCGACGTTTAATGTTTTTTGCCATGTTTTGA
GATTGGAGGACGGACGCAAACATCGATTCCATTTCTGAAGACAAGACCGT
CTGGACACTTTCTGCAAACAGCTCCAGTGTTGGCGCATTGAACGTAGTAG
GTTGGTTTTCCTGGGTAGCTGACTAAAGCTCCAACGGGTTGCCAGTTGCA
TAAGCTTTGTGGACCTGAAATATTTAGGATATTATTTGAGTTTTATTCCA
CAAACATCATAATAACTTGATGACAGCTTATCCTCTATTCAGTTGATTTT
TCAATGCTATACAATGTTGAGGAAAAGAACGCAATGACATTCGAAAGTAT
ATTGGTCAAGGTTAAATTGTATAAATAAAGGAAACAAAACGATTTCACAA
CATACATTTTGGTGGTGGTGGTGTCGTGGTGGTCGTAGTTGTGGTAGTGG
TGGTGGTGGTTGTGGATGTCTTCTTTGGTTGAACGCAGACTCTCAAGTGG
TTATCGAAAACTGTGTTGGCTGGGCAATCGAAACAATAAGCGATCCAGTT
GGAACATTGGAAGAAAAATCCTGGATGATCATTACTGACTCGGGCGGAGA
ATCCATCTTCTCTCCATTTGCAGAGTGAGTTTGGACATGGCTCTCTGGCG
TAACATGCTAAAAGAAGGTAGAAATTAGGTTTGAATATGGTCAATTGAAG
TAGGTTTCGCTTATCTCGGCAAGAATAACTTCATTTTGATAACTTAAAGA
GGCTTTGATCAAACCGAGGAGAAACTTACCAACAATAAGTACGACGGCGA
TggaaatcttcatttttgtgATTTGGTATCTGATTGACTGAATCTCTTtg
gatttttatcaatttaGAATGTTGGATGCCttgttttaaaagatttttca
gtatttataggaaaaaccagaGAAGCTTAAAACCTCAACTTAAATACTTC
CTTAGCCTTCTTTTTGTTTGTTAACTTCCTTTGGTCTCTCTGACTTAATT
GCCAGAGTAGGCACCCGTggttacaaattttgaaatgattaTTATGTAGG
GTAAATCTAAAATTCCTTTGGTCAACTGGGCATCAGTGAAGGCTTGGTGT
TTTCTATTAGTTGTCATAGTGATATCAACCACCACTCAAATTCTTTTCTG
ATCGCTTCCTTACCACTAAACAATTATGACGCAGAAATCTTGAAAAGGGG
TCAATATTCTTTgcattaagaacaatttttcatCAATGAAATATTCCAGT
CAGTAGATGAAAAATTGTTCCTACCTCAAGTGGATTAATCCCTGTGTCGA
CTTTTTCGCAATTTAGGAATCATAAATATTTTCgtgtggattaaatttcg
cgaatcggcctctttttctttcatttttctaggggttttggccaattttg
ggATTTTAAATCTTCGTGAAGAATAAGTTTAATCTATgcagggttcagac
agaccctggaaaacctggaaatatgataaattttcagaaaaatcagggaa
actcagggaaacccagggaaaaaatttttttttcccagTCTGCNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTTGATACTC
AGggaaaaaatagggaaaaaatagctaaaatgaggaatttctcagggaaa
aaacctttgaaaattgattaaaattcagggaaactcaggagattttattt
tcgaaggtctgtctgaaccctgtCTATGCGAAATCACGCAGAAAAAAATT
CCCCATCACGACATCGCTTAACAACCGCTTGAGGGGCCTCTAATATGTAG
CATGCTCAATAATAGGAATAATTTTGTTGTTGATCATTCCAAACAATCTT
TTTTGCGATTGTTAAGATTTAAGGAGAAAAGTTCATTGAAGAAAGTATTC
CCTCTTCTCCCACAGGAAAACTTTTTTGCGATTAACTTCACGTGNggggt
acctactaacgtctgttgtttgggggtacctaaaattcagagggtaccta
ttttcttagggggtacctaaacccctggtccatgccatgtTACATCGAAA
GATGTTACCAGCGCAGCGTTCCACGTTCTTCTTGCGATTAAGGCAATTAA
AATGGAAAACaactaatattttttaattcgaGGTCTACATTCTTAGATCT
TAACAATCGTAACCGGAAATTACCGGTTAATATATTTGAAACCCACATAG
TAGATTAATTCGATCTACTTGCCATTAAACTAAATGCAATATCTGGGACA
TTAAAGGGGNAATTACCGGTTAATATATTTGAAACCCACATAGTAGATTA
ATTCGATCTACTTTTCATTAAACTAAATGTAATATCTGGCACATTAAAGG
GGAGCTACTAGATTTAAACAGGATTTTTATCTACGATACTTGAGATTTGC
CTGCAGCGTTTCATTTCCAGCAAAACTGATTTTTAGAGTCAGACTTCAAG
ATCGCCGGAGAAACTGTTTTCTTGAATTGTCATTAAACTAAATGTAATAT
CTTGATAACTGGGTATGTAAGGGGTGCTACTAAATTTAAGTAGGATTTTG
GGTGTATTCACACTGTAGTTTAAAAGTTGCTTGAAAATATGGGACAAGGA
ACtgcacgatcttctcctttggctcttattatctaactttgcacgattGC
GTGATCGTATTTCAAGCAAACTTCATCATGCCAAAACCATGATTTTGTGT
TGATATGGTAAAACAATAGTTTTATCATACCGAGAAAGCAATCCTTGAAG
TGTGTGAATCAACGTGAATTTGTTGTATTTTGAACCGTTTGGTAATTTTA
AAATCATTGCTGCAACATTTTGAGCTGCTTCGAACCTACGTCAAAGAAAC
AAACGCAATTATTACTTTCGCTTAAACGTTTTACGTACATCAGTAACAAC
ATATATGATTTGGACACGTTAAGGCCATtagcttgaaactttcagtGTAA
ATTTAAATACACCCTTTGACCTGTAATACTTGAGATCTGCCAGCCAAtgt
tgatttccaaaaaaaactgattttgagaATGaacttcccagctggcacac
aacgttgtaaCAACGTTCATAACGTTCATCTANNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNCTTCTTGCGATGCAATCTCCTTTCCTC
CCATTAGGAAAAGTCTTGATGGGCGGTGGTAGCAGTTGTGAATATATTGA
GCCATAGCTGGACACAATATTTtgaacgttcatctaacgttgtatggacg
ttgtgaacgttagataaacgttgaaacaacgttgtgtgccagctgggttt
tcAAAACCGCCGAAAGAACCCGTTATCACCCGTTATTATCAGAAGTACTG
TTCTTAAATTTCCTTAAAGTTCATAGTGgcaattggaaaattttcaaaat
ttccatacagATGTCACtttgtaaaaagaaaatcattttataTTTACAGA
TTTAATCGCACGGGCTTTTTGTGTGTTCAATCGTTCGTTcgctaaattat
ttttctgGATCTGCTTGCTTTAAACTGTTTTTGCTTTGCTTACTTTACTT
AGTCAAACTCGTCAAACTTCAATCATATCAGGTAGCGTCATTCAGCTTTC
TAGTTTgttatgtttgttttttcattcttcCCTTTTTTCACAGGTCAATT
AATACAAATGGATATAGTATTTTATGGACCGATAAAGGTGACACACAACG
GTGACTTCCAAAGTAAAACAAGATTCAGGTAATCCTCTCtggttttaaat
aaattttctaaGGCTACGTTTGATATgacttgaaaattatttttcctctG
AACAACTCCATGAAACTAAAAAGGACACGAGATTTATTTGAAAACAGCTT
CTTGATCACAAAAAGTTACTGATTCTTTCGTATAACTTTGACTTTCCATT
TAGCTTATCTATACAGGCTTCGTGAAGCTTTTAACTCTTTTAGAAGTTTC
TGAAAGAAAGCATTTTGCAGGATGCATTTTGGCAGCGGAGAATTTCTTAG
GAAGTATTGTTTGTTCATTATTTGACCCTTAGTAGCATAGCAGTTGCAAT
AAACCGGTcactctcaggtgcctaataaacgacccctgcttgttaatatt
tcgattttttcctACACCCCCCTAAACCTTgttactattttttgaaaaga
agagtTCCTTATTTGGATTTAAATGTCCAGGCTTCGGTATAATTACCCTG
TTGTTATTGaccccggtaattaggtcccccaTATGTTATTTCCCATATCG
AAAAATAAATCTTCAACACACAGGATTACTTTCATTGTTCAGAAATATAT
Atttgatcaaaaacaaaaaactaacaaagaaatataaatgtatatcaaaa
tttacaaagatGCAAGAGAGAGGAGTTGAGGGAGCTCGGCGACATCATTG
ACATTTAATGTTTTTTGCCATGTTTTGAGACTGGAGGACGGACGCAAACA
TCGACTCCATTTCTGAAGACAAGACCGTCTGGACACTTTCTGCAAACAGC
CCCAGTGTTGGCGCATTGAACGTAGTAGGTTGGTTTTCCTGGGTAGCTGA
CTAAAGCTCCAACGGGTTGCCAATTACACAAGCTTTTAGGACCTGGAATG
TTAAGGATATCGGtttagaaaataatcaaaaagtcATCCTCGGATTCAGT
GGCTTAAGTGCAATAAATATAAGTGCTAGAAAAAAGGGAGCTAATGTATT
TGAAAGGTATATTGGTTAGAGTTAGCAGTAAGAAATAAAAGGAAACTACA
TTGAACGTACATTTTGGTGGTGGGGGTGTGGTGGTGGTAGTGGTGGTAGT
AGTTGTAGTGGTAGTGGTAGTGGTCTTTCGGTTGACACAAACTCTCAAGT
GGTTATCGAAAACTGTGTTGGCTGGGCAATCGAAACAATAAGCGATCCAG
TTGGAACATTGGAAGAAAAATCCTGGATGATCATCACTGACTCGGGCGGA
AAATCCATCTTCTCTCCATTTGCAGAGTGAGTTTGGACATGGTTCTGCGG
CGTAGcatgctaaaaagaaaaagtatgcaaaacatcaGTACATTTTGGGG
ATGGTGAAATGCAgaacttttgttttgtttatacaTTGACAGAACCATCA
TTTTGTAAGAATCAGGAATCTTTGGTTTCACTAAAGAAACTTACCAGCAA
TAAGAACGGCGGCGatgaaaatcttcattttgattttgttgatgtttatc
CGATGCTCTTCAATTGAATATGGATGCTTGAGCCTTGATTTCTTCCACTA
TTTATAGTGGAAAGCTGNAATTGAAAGTGGATGCTTGAGCCTTGATTTTT
TCCACTATTTATAGTGGAAAGATAATTGATCGTTAATTGGAACATTGATT
CCCCCTAATGACTTCCTTACCACAAATTTTAATCAACATCTTTGTGCTGA
TTGGTTCTTTTAAATTCCTGACAGACATTCAGTGATTAACTGTTTGTGTG
GTTTAAGTGAAGACGCCCTATCAACGTGTGTTTCTTGTTGCGAGTGCGGC
ATTTTTTTCGATCCCTCTGTTTGATTCTCTCCGTTCATGTACACTTCATC
TTCTTAGATCACTGGTCTTAATTTCCAACGTactcttgcaaaaaaaaaat
tgttgctgGAAATATTTTGCCTAAAGGACGTTCTCAGTTCTACTTACTTC
AACTTTAATATTTCTAGATCATTTTAAAGCTCTTTCggttacaaaatata
aaaaaataaaacaaacaaacaactaTCCATTATATTTTAGACTCAGGTGG
CTGACATTTTTAAGGTCACTCGGAATCGTTGGTCATTctgccaaatattt
tgttttcattgttGCCAcgacaatgttttttttttgtcgcaGCTCTTTAT
TCAAGTTACTTTCTCCTGATAAACTTATGATATATGTTTCTGGAATTTAT
CTTCATTAGGAAAATTCATGTTATGTTGGCTTATCATTCTCTTCAATACT
TATTCGTGAAAAGACAAATGATGATCAATGCATAAAAATTGCGGAGATGA
AAGTTTGTGCTTGTCGCTGCACATTCGCTGACTTCCCCACAAATTTCGGT
GTTTCAAATTTAAAGATTGTAAGACAACTTCAGGATTTTAGAAATTGGCT
AGCTACTAAAATCCCTTCCTTATCTGCATTCATTTTTGTGTTTGTTGCCA
ATTAGCAACGATGGAGGGAGGGGGTGGACTTTTTTTACCTCCTTTCCTTT
TCCTTTCCTTTTCCTTCAGGGGgctcaaaaaattgatttttaaatcaGTA
AGACTATAACTTTGGGACTAAAGGGATGAACTCTTTGCGTCAGGGTGTTG
CTAATGAGCTCCTTAGTTTTTTTTTGATAGAGAGCCAGTTAAATGTTTAT
CTTACGTAGATTAAATTCGCGTGAATCAGTTTTTATGATTTTCGctattt
tggcccttttttgcaaaatttagtccatgtgaaaaatttaaaatccgaGC
TTCAGCCCAGACCCcgaggaaaatgaaagaaattaggttAAAAAGAGGTT
TATTTGCGAACTTTAATCATAAGACGTAAGTTTAGATTCTCAATTCGCGA
AAAAAAGTTCATGCAAATATCAATCCACTCAGGGGTTAGTTTTTATGTGA
CAAGGGGAGGGGGAGAGGCAGTTGAAAATTATTTGTAAAGAAAGAACAAA
AGACCATTGCATTTCAGTCAACCTAcgtttcatttttccaggagtGAATC
GACAAGATCGTTTCTTTTCCAAAGGGGGAGGGGAGACTTTTCTCATGACA
GGAACCTAGCATGACTTTTACAGAGGGTTGAAAGGTTCACTGAAATAAAG
ATTGTTTTTGTCAGTGCAACGTTTGAATCACGGTATAACAGtaacaattt
ttcaatacttaaaaTGTTACAATTTTCTATAGGGTGTTATGTCATTTTTC
AAGAAGAGGTCCgttccattgagtttaaagcctgaagggttagagttcaa
tctctaacctttctcaggcaagaaaaagtgaagccttaaaaaatgcgccg
tatttttgacgatggattgaatctagcaattcctttgtttacgattgata
tttttttcgaaatttagcggtagattttagtttcaatctgtcatttgtgt
aaaaaccaggcgagccgctcaaggccgcgcaactttggtaggatttgttg
gcttcaaatcctaccaaggagattgacttctagcccttcgggcttatact
tcattggtccgttcacccctgtatggatataagaACAGCCTATTTTGTAA
AGGTCTGAAATCTCTGTCAAGGGAAAGGGTTAAGTGGCAATCAGAAATTT
TCTGCTTACAGTTATTTTGATTAGTTTTGCGATGGCTGAATAAAAAACTC
ATCAAACTTTATTCTTATCACCTTAGATAATATGGGCGCAAACAAAGTAT
GTTGAACCAAACCGAGCAAGGTGCACAGATACAATAAATATCTTTCCTTT
TGATGGTGCGATGGGAGGGAATTACAGTTTGTTTTTCAACTGGAACCAAA
ATTCAATGGTTTTCTAAGTGAAAAGTTGAATTCTCAAGTATTTTTACAAA
ATCATTTACAGTCAAATAATTTTTAGTTAACGTTTATGTATATGAACATT
TTTGGCTAGAGTTTATCATTGTGTAGCGAAAATTTCTTGATTATCTCTTT
TTAGAACCCAGTCTCTTTTTCGACCACTACAATTTACTTACCACTTAATC
AAAAAAGAAAGGCTATATCTGTTGAGATGTTGTAGTTCTTCGTTTAGGAA
AATTTAGTATACTTGGCATCAGATCTTTACAGAATCAAGAATAGACAAGG
GTTAGAAGATTTACTTTCATTGTGcagaaatatatattttgatcaaaaac
aaaacaataacaaagacATATACATGTAtatcaaaatttacaaagaGGCA
AGAGAGAGGAGTTGAGGGAGTTCGTAGACGTCGTTGACATTTAATGTTTT
TTGCCAGAAGCTGGACGGACGCAAACATCGATTCCATTTCTGAAGACAAG
ACCGTCTGGACACTTTCTACAAACAGCTCCAGTGTTGGCGCATTGAACGT
AGTAGGTTGGTTTTCCTGGGTAGCTAACTAAAGCTCCAACAGGTTGCCAA
TTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002356XLOC_002356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004232-exon-sc0000041-1491911889:311329..311615TCONS_00004232-exon-sc0000041-1491911889:311329..311615Clytia hemisphaericaexon
TCONS_00004232-exon-sc0000041-1510915933:311329..311615TCONS_00004232-exon-sc0000041-1510915933:311329..311615Clytia hemisphaericaexon
TCONS_00004232-exon-sc0000041-1575043694:311329..311615TCONS_00004232-exon-sc0000041-1575043694:311329..311615Clytia hemisphaericaexon
TCONS_00004232-exon-sc0000041-1491911889:322421..322434TCONS_00004232-exon-sc0000041-1491911889:322421..322434Clytia hemisphaericaexon
TCONS_00004232-exon-sc0000041-1510915933:322421..322434TCONS_00004232-exon-sc0000041-1510915933:322421..322434Clytia hemisphaericaexon
TCONS_00004232-exon-sc0000041-1575043694:322421..322434TCONS_00004232-exon-sc0000041-1575043694:322421..322434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:311329..322434 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.472222	0	0.798581	0	0	0.147007	0.990339	0	0	0	2.41138	0.116236	15.2014	43.4345	19.5898	14.8394	0.792146	1.72416	4.78128	2.91726	0	0	0	0	1.7104	0.561931	0.0949133	1.07443	0	0.140352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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