TCONS_00004231 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004231
Unique Name	TCONS_00004231
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1333

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000041:301577..306112+
coding sequence from alignment at sc0000041:301577..306112+

transcript sequence

>TCONS_00004231 ID=TCONS_00004231|Name=TCONS_00004231|organism=Clytia hemisphaerica|type=transcript|length=1333bp
AGAAGATTGTTTTGAGGGTCTGTCAAAACTATTTTCTCGATCGGTACCGT
CTGTTTCAAAATGTTAGCATCAATAGGGAGCAGTTCGTCAAAATAGACCT
CTTTGACCAACAACAACATTGCTTGCCGacctatcaaaacaaaatccaCT
AGCAagaatttttttagaatattcTAGAAATAAGAAACGGAAGAATACTT
TTTCGAAAAAGGTGTAGCTTTAGataaattgtaaagatggaGCAAGCAGT
TCAACAACAAATTGTGCAAGCTGCCAAAGTGGTGGAAAGTATGGTAGATA
AAGAAATGGATCGCCTTGATAACCTTGGTGGCGACGATTTGCAGCGTATA
AGACAAGAACGgttgaatgaaatgaaaaaaatggtaGAAAGAAAGGAACA
ATGGAAGCAGATTGGCCACGGCAAATATGAAGAACTGAAAGATGAGAAAG
AGTTTTTTGAAGAACAGAAAAAAAGTGAGCGATTTGTTTGCCATTTCTAC
CGTGAAAGCACGTTCAGGTGCAAGATTATAGACAAACATTTAGATATTCT
TGCTAGAAAGCATATTGAAACCCGATTTGTTAAAATTGATGCTGAGAGAT
CTATGTGGCTTGCTCAAAGATTGAAAGTCAAAGTTCTTCCAACTTTGGCA
TGTATTAAAGATAGCAAGACCAAAGATTTTATTGTTGGTTTTGATGATTT
GGGTGGTGTTGACGATTTCCCGACAGAAATGTTGGAATGGAGATTGGGAA
TGGCTGATATGATAAATTACAATGGTGATAAGCCAGCATTGAAAAAGAAA
GCTCAAACACGAGTGTTTGGTTTTGCAGGGAAATCCAAGAATATAAGAGA
TGATGGGGAGTCTGATGATGACTCTGACTAAATGAACTTTCTGCAAATAG
ATCTTATCAGAgtctttgatttttctaaaaaagcaatgcattgtgggatt
gtttcgggagtattactatagaaatctcttaggaattcctcgagggaaat
ctattgtaatactcccgaaacaatcccacaatgcattgctttcttagaaa
aatcaaaaactccgataaggtctattgtaaCAAACATTATTTCAATGACA
TTTTTGCTATGGTTGGATAAGGAAagttttttaattgattttatgttgaa
aaattttaattcagtttatcaataagtttttatttattctCTTTTTTGTA
TGCTCAGTATAATGTAAATAGATAAGTACAAATAGGAACGGATAGTATCT
ATATATTGAAAATATATACTGCAACTGATGCTGCTTATTTTATACAAAGA
TACATCTtttaagattgaaaattttagagTAGA

Run BLAST on NCBI

protein sequence of TCONS_00004231-protein

>TCONS_00004231-protein ID=TCONS_00004231-protein|Name=TCONS_00004231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MEQAVQQQIVQAAKVVESMVDKEMDRLDNLGGDDLQRIRQERLNEMKKMV
ERKEQWKQIGHGKYEELKDEKEFFEEQKKSERFVCHFYRESTFRCKIIDK
HLDILARKHIETRFVKIDAERSMWLAQRLKVKVLPTLACIKDSKTKDFIV
GFDDLGGVDDFPTEMLEWRLGMADMINYNGDKPALKKKAQTRVFGFAGKS
KNIRDDGESDDDSD

Run BLAST on NCBI

transcript from alignment at sc0000041:301577..306112+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004231 ID=TCONS_00004231|Name=TCONS_00004231|organism=Clytia hemisphaerica|type=transcript|length=4536bp|location=Sequence derived from alignment at sc0000041:301577..306112+ (Clytia hemisphaerica)
AGAAGATTGTTTTGAGGGTCTGTCAAAACTATTTTCTCGATCGGTACCGT
CTGTTTCAAAATGTTAGCATCAATAGGGAGCAGTTCGTCAAAATAGACCT
CTTTGACCAACAACAACATTGCTTGCCGacctatcaaaacaaaatccaCT
AGCAagaatttttttagaatattcTAGAAATAAGAAACGGAAGAATACTT
TTTCGAAAAAGGTGTAGCTTTAGGTAAGATATTTATActatgattttatt
ttattttcaagattagtttagttttttctgggTGTGTCTTTAACATTTTT
TAGACGTTTGATATAACCATCATGCACTTTGTTTTGACCAACTTTTCCAG
CTTGGATTTCCCAAGGggtcttttctttttcattttttcgaagGGGATAA
ATTAAGTTTCCAGGTCCTTTTAGGGGGTATTGAAGATTTCCATCCAGGGG
TTCTTTTCAAGAAATTAGCTTTGCTATTTGACCCAAACATCTGAACATGT
CTGGAAAATGTTTGGGTTATGCTAAGGCCATAATGTAGGTTGCGTCGAAA
TTAGGATAGGAGATACAGCCCTCTGGAAAGTGAAATTGATTAAGGTCTGG
AAAACGCATAAGTGTGTCGCTCTGATTACTTGTCGTTTTGCATAGATAAG
ATTCCACTCCACTTCCACTCTTTTCTTTGTACCCTgagttggtctaatat
tgacatcccttgtctaattccaacacccttctttaaaggaataatatgaa
agcttgaaacaATGATTGATAAAGGATCATTCCTCTTTGACCACTaggca
aagaaaaacagtttcaacctttctataaattccagacggtgtcaatcgaa
caacttcaaacaaaaatcgcaatcgaaccaatcgaacgtaatcgaacaca
attgaataattgcgattcgattgtcgaacgtaatcgaatctcaatcgaac
ggccgattcctgggtaaaattcgattgcgttcgagtaaggttagattggt
tcgattgtttgTTGActatgtttgattggttcgattgattgttaaTTACA
TTAGATTAATCtttgatttcgttcgattacgattatgtacgatgagtttg
attgcgattaaactaaattggatcactctgttagagcttcttagcgtggg
cggccgagcgcttaagtaccatactaaagcgaataaaatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgttcgacaatcgaat
tgcaattattcgattgcgttcaattgcgttcgattgattcggcgttcgat
tcgttcgattgacaccgtctggtaaatttcagctgataaaaagggtgtca
gaattagagaaggggtgtcgacattagaccaagttactgGAAGGTATTGG
AAAGACCTAGACTAGATGAGAAATGAGCTTCAGAAAGTCAGATCAGACAG
TTTTGTAAGTAAACACCATATTTACCGTACCTTTCCGATTTCATGGCATA
AATATCTGTAAAAGTCAAGAGAATCTTAGCACAGAAGTGAAATCTTATGC
AAACGACAGTAATCTTGCATCATTATTGTTTTTCAGCCTTTCATCAAATC
TCACTTTCCAGAGTGTTCTATCTCCTAATTTCCACACGACCCACAGTATA
CTTATATATAATTTTTGGGAAATGTTCCAGTCAAAATAGCAAAGGATTCT
TTTGACCAAACATTGATGAtttattctttccaaaaacctGCCCTGAACAT
GTGCAGTATCCAGGAAggacattcaggactttttcaaGTTCACAAGTGAC
CTGAAAAAATTTAGGCTATACCATGGGTCCTATTTCCACGGGATCAGTAt
cattcaaaatttccagggaGTTTGTATGATTTTGCTTTTGGAATAGACCA
TTTTAATACCTTAATGTCAATTAATTTTGTGTGTTTtataattttgcaat
tttttaggTAATACCGtttgagtttttcaaaaatacaaaatcaaaattag
ataCACACGAAAATTacgttgaaaaaaaatacaaaaaacaaacgaaaaat
acgttgtgtttcaagcgaaatcagttgagagttttcttttttcattccca
ctttttgaaaatgcccaatTAAGTGAATCATGAAATTTAATACAAGCGAA
AACTTCCAGAAACTGGCAATCATGAAATTTAATCGATTATAACACGCAGA
ATTTAATACCATTAAGCTGCTCTTTACTCTGGATCCCAAATAGTTGGGGT
GGGGGGCTACTAATTGCTAGGGTTTGTAAACTGTACCTCCAAAAATCCCA
AAATAAAGTAACTGGCTCTTTTTAAAGCAATTCAGCTTATGatagcaaaa
aatattttcaaaaatatataaatgagGGTCCTTACGTCCTTAATGAAAAC
AGggagtcaaatttttttttgcaaaaatcagtatTGTATTGGGAGAGACC
CTATTTATTTgcataattttcattatttgaatTATAGGCCTCTTAGATTC
TGTTTTTGACTAGTTAAGTTCTTATAGATATCAACACTTTCCTTTATCAA
GGACAGGTTTCTAGCCTTTCACATTATATGTCTGCTTCACTGTCAATCTC
ATGTTGGTGAAAGAGATAAAAAGGCTTTGAAGATTCTCAAGGTTATTACA
ATGAGAAAAATAACATAAATGTCAAGAATTAATAACCAATTCCAAAATTG
AAACTAATTCTCATAATGTTCTTTagataaattgtaaagatggaGCAAGC
AGTTCAACAACAAATTGTGCAAGCTGCCAAAGTGGTGGAAAGTATGGTAG
ATAAAGAAATGGATCGCCTTGATAACCTTGGTGGCGACGATTTGCAGCGT
ATAAGACAAGAACGgttgaatgaaatgaaaaaaatggtaGAAAGAAAGGA
ACAATGGAAGCAGATTGGCCACGGCAAATATGAAGAACTGAAAGATGAGA
AAGAGTTTTTTGAAGAACAGAAAAAAAGTGAGCGATTTGTTTGCCATTTC
TACCGTGAAAGCACGTTCAGGTGCAAGATTATAGACAAACATTTAGATAT
TCTTGCTAGAAAGCATATTGAAACCCGATTTGTTAAAATTGATGCTGAGA
GATCTATGTGGCTTGCTCAAAGATTGAAAGTCAAAGTTCTTCCAACTTTG
GCATGTATTAAAGATAGCAAGACCAAAGATTTTATTGTTGGTTTTGATGA
TTTGGGTGGTGTTGACGATTTCCCGACAGAAATGTTGGAATGGAGATTGG
GAATGGCTGATATGATAAATTACAATGGTGATAAGCCAGCATTGAAAAAG
AAAGCTCAAACACGAGTGTTTGGTTTTGCAGGGAAATCCAAGAATATAAG
AGATGATGGGGAGTCTGATGATGACTCTGACTAAATGAACTTTCTGCAAA
TAGATCTTATCAGAgtctttgatttttctaaaaaagcaatgcattgtggg
attgtttcgggagtattactatagaaatctcttaggaattcctcgaggga
aatctattgtaatactcccgaaacaatcccacaatgcattgctttcttag
aaaaatcaaaaactccgataaggtctattgtaaCAAACATTATTTCAATG
ACATTTTTGCTATGGTTGGATAAGGAAagttttttaattgattttatgtt
gaaaaattttaattcagtttatcaataagtttttatttattctCTTTTTT
GTATGCTCAGTATAATGTAAATAGATAAGTACAAATAGGAACGGATAGTA
TCTATATATTGAAAATATATACTGCAACTGATGCTGCTTATTTTATACAA
AGATACATCTtttaagattgaaaattttagagTAGA

Coding sequence (CDS) from alignment at sc0000041:301577..306112+

>TCONS_00004231 ID=TCONS_00004231|Name=TCONS_00004231|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000041:301577..306112+ (Clytia hemisphaerica)
atggaGCAAGCAGTTCAACAACAAATTGTGCAAGCTGCCAAAGTGGTGGA
AAGTATGGTAGATAAAGAAATGGATCGCCTTGATAACCTTGGTGGCGACG
ATTTGCAGCGTATAAGACAAGAACGgttgaatgaaatgaaaaaaatggta
GAAAGAAAGGAACAATGGAAGCAGATTGGCCACGGCAAATATGAAGAACT
GAAAGATGAGAAAGAGTTTTTTGAAGAACAGAAAAAAAGTGAGCGATTTG
TTTGCCATTTCTACCGTGAAAGCACGTTCAGGTGCAAGATTATAGACAAA
CATTTAGATATTCTTGCTAGAAAGCATATTGAAACCCGATTTGTTAAAAT
TGATGCTGAGAGATCTATGTGGCTTGCTCAAAGATTGAAAGTCAAAGTTC
TTCCAACTTTGGCATGTATTAAAGATAGCAAGACCAAAGATTTTATTGTT
GGTTTTGATGATTTGGGTGGTGTTGACGATTTCCCGACAGAAATGTTGGA
ATGGAGATTGGGAATGGCTGATATGATAAATTACAATGGTGATAAGCCAG
CATTGAAAAAGAAAGCTCAAACACGAGTGTTTGGTTTTGCAGGGAAATCC
AAGAATATAAGAGATGATGGGGAGTCTGATGATGACTCTGACTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002355	XLOC_002355	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004231-protein	TCONS_00004231-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004231-exon-sc0000041-1491911889:301577..301799	TCONS_00004231-exon-sc0000041-1491911889:301577..301799	Clytia hemisphaerica	exon
TCONS_00004231-exon-sc0000041-1510915933:301577..301799	TCONS_00004231-exon-sc0000041-1510915933:301577..301799	Clytia hemisphaerica	exon
TCONS_00004231-exon-sc0000041-1575043694:301577..301799	TCONS_00004231-exon-sc0000041-1575043694:301577..301799	Clytia hemisphaerica	exon
TCONS_00004231-exon-sc0000041-1491911889:305003..306112	TCONS_00004231-exon-sc0000041-1491911889:305003..306112	Clytia hemisphaerica	exon
TCONS_00004231-exon-sc0000041-1510915933:305003..306112	TCONS_00004231-exon-sc0000041-1510915933:305003..306112	Clytia hemisphaerica	exon
TCONS_00004231-exon-sc0000041-1575043694:305003..306112	TCONS_00004231-exon-sc0000041-1575043694:305003..306112	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041	supercontig	sc0000041:301577..306112 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
143.351	134.034	74.4274	66.2864	63.7612	48.5061	63.9797	64.8618	48.135	43.9459	35.5494	27.1906	27.9111	23.0452	29.6353	35.5779	56.5	52.0585	21.1168	21.9444	53.9002	50.874	124.032	105.251	61.9824	51.8777	57.6416	45.0648	69.3386	80.9402

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis

Blast

[Close]

BLAST of TCONS_00004231 vs. Swiss-Prot (Human)
Match: TXND9 (Thioredoxin domain-containing protein 9 OS=Homo sapiens GN=TXNDC9 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.431e-40
Identity = 85/165 (51.52%), Postives = 132/165 (80.00%), Query Frame = 3

Query:  285 ESMVDKEMDRLDNLGGDDLQRIRQERLNEMKKMVERKEQWKQIGHGXXXXXXXXXXXXXXXXXXXXXVCHFYRESTFRCKIIDKHLDILARKHIETRFVKIDAERSMWLAQRLKVKVLPTLACIKDSKTKXXXXXXXXXXXXXXXPTEMLEWRLGMADMINYNGD 779
            E  +D E+ +LD +  D+L+R++++RL  ++K  ++K++W   GHG+Y E+  E++FF+E K+SE  VCHFYR+STFRCKI+D+HL IL++KH+ET+F+K++ E++ +L +RL +KV+PTLA +KD KT+D++VGF DLG  DDF TE LEWRLG +D++NY+G+
Sbjct:   26 EEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILNYSGN 190

The following BLAST results are available for this feature:

BLAST of TCONS_00004231 vs. Swiss-Prot (Human)

BLAST of TCONS_00004231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TXND9	3.431e-40	51.52	Thioredoxin domain-containing protein 9 OS=Homo sa...	[more]

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TCONS_00004231 (transcript) - C. hemisphaerica