TCONS_00004228 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004228
Unique Name	TCONS_00004228
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1950

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000041:219647..225801+

transcript sequence

>TCONS_00004228 ID=TCONS_00004228|Name=TCONS_00004228|organism=Clytia hemisphaerica|type=transcript|length=1950bp
TTCaagtcaaaaacttttctgGGTTTTCTGCTCCTGTGCAAGagaTTTTG
TAGAGAAAGAAATGGATGCaggaatcaaaagaaaaagtgaagatcATCCC
aatgaagattttgaaaagCGAGCAAAATATGCCTACTTGGGAAAGATTCC
GAATGTGAATGATACAAACACTCCTTGTATTGTTTTTTCACTCCCAGAAG
AAGTTGGTGTGTTAGCTGACGCCCTTAAGATCTTCAAGAAACGTCAAATT
AATTTGAAGCATATCGAGTCACGACCATCTAAATCTAACAAGAAGGATTA
TGAATTTTATGTGGATATCGATGCAGAGACTGCCAATTCCGAAAGTGTCA
AACTTGTCGTAGAAGATTTGAAGTCGAAAGCCAAAAGTGTTGTTCTGCAT
AATGAAGAATCGGTTCCATGGTTTCCAAGAAAAATCGCTGACCTTGACAA
ATTTGCTGACAGAGTTTTGAGTTATGGTTCAGAGCTTGATTCAGAACATC
CTGGATTCACTGACCCAGTCTACCGAGCAAGACGAAAAGAATTTGCTGAC
ATTGCCATCAAATACCGACAcggAGAGCCGTTACCACGTGTCACTTACAC
GGAAGACGAAATTAGCGTTTGGAACACAGTTTTCTCTGAGTTGACGAAGC
TATTCCCGAAATATGCGTGCAGAGAAGTCAACTTCATGCTTCCTCTTCTT
GTAGAAAACTGTAATTACAGAATCGGAGCTATTCCTCAATTAGAAGATGT
TTCCAAGTTCTTAAAAGATTGTACTGGTTTCACATTGAGACCTGTTGCTG
GTTTGTTATCGTCACGTGACTTCTTAGCTGGACTTGCTTTCCGCGTTTTT
CATTCCACGCAATATATCCGACATGCAAAGACTCCTATGTATACTCCTGA
ACCAGATTGCGTCCACGAGTTAATTGGACACGTTCCTTTGTTCGCTGACC
CGAGTTTCGCGCAATTCTCTCAGGAAATCGGATTGGCGTCACTTGGTGCT
CCCGATGAATGGATCGAAAAACTGGCTACCTTGTATTGGTTCACAGTGGA
GTTTGGATTATGCCGTCAAGATGGTGAAATCAAAGCTTATGGCGCAGGAT
TGCTCTCTTCCTTTGGCGAGCTACAATATTGTGTGTCTGACAAACCGGAA
CATTTGGCTTTCGATCCGGAAAAGACATCACAGACCAAATACCCGATTAC
GGAATTCCAACCGCGATATTTCGTAGCGGAATCCTTTGAAGATGCCAAAG
AGAAAGTTAGGAAATGGGCGAATCATATTCCCAAGCCATTCGCACTGCAC
TTCAACCCTTACACACAAATTGTTGAGACGCTAGATCGTAAAGAACAGGT
CCTTAAATTGATTGAAGACGTGCGAGGAGAATTGGACCATGTATCGACAG
CTCTCTCCAAGCAGCAATGACGAATCTTTTTAAAGTGACTAAATTGATGA
CCCGAATACGATTGATAAAATAACTCCCTAGAATAAGCTTAGATAAATAA
CTTGGACGTGTCTACTAGAAATCCGATGAAACCTCAAAAGGAACATAGCT
GGAGCAGAGGAActttaaatttctttgaaagaatTTGTTGCTTGTGGCTT
TCATTTGGATCGATATTTTCGTGACTTTTTGTCATGAAGTCAACCGGAAT
GACGtttagaatttttgaattattatttttgaaagaagataaacatgaaa
tattttttctcaaatggttttttttttttttttcatcattaatttcttga
tctccaaaagtatattggttcttcttacaagaagttgaaatattttatgt
atatgttatgtatATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtttatgtatatgttatgtatataaatgtatataaaattctaCGATT
CAAACTGATACGAAGTGGACAGCTAAATCATTAATGGAAGCTTAGTGGGC

Run BLAST on NCBI

transcript from alignment at sc0000041:219647..225801+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004228 ID=TCONS_00004228|Name=TCONS_00004228|organism=Clytia hemisphaerica|type=transcript|length=6155bp|location=Sequence derived from alignment at sc0000041:219647..225801+ (Clytia hemisphaerica)
TTCaagtcaaaaacttttctgGGTTTTCTGCTCCTGTGCAAGGTACAATA
TACTTGGATCttcaaaaaattagatttttttcaaatgaccTATGATGAAA
AGTGTGATATTCAAAAAGactaaaatgaatttttgttgGAGTGTCTAATT
TGCCGGTTTGGTTGTCATTTTTAATTAATATCTCCTTTTGCTAATCAATT
CATTCCAAATGAAACAAAATTCTGTCTAAAATAGATAATTTTACCTCAGA
GCATGAAAGTGACAAAAGTTAGAATGCTTATTATTCATGATCACTTTTTA
GATTAGATTGATATAAATGACTATTTAAATCATTTACTAGCTTTTTATGC
TTGCGGACTTTCTGCTTTATAACATTATAACAATGTCAATTCAATCAATG
GTGTATTCTTTCAATGGGGATTCAGGAAAATTCTGCTATTTATATGATCA
TATCAGATCATCGAGAGTTATTTTGCTAAATGGTTTGAAAGCATAATTTA
AACCatgttgaaaatatttatttaattgCAGTGTTAATAAGATAAGGGCA
GCAGGTCATTAACAGCGATGTTATGCCGTTATTAATATTACTGTCGACAT
GCTTAGATGTATCTCATTGCTATCTtgtcagtttgaaaaaaagtggatta
tataatataatattttttctaatttttacaactttttgatttttaagaga
TTTTGTAGAGAAAGAAATGGATGCaggaatcaaaagaaaaagtgaagatc
ATCCCaatgaagattttgaaaagCGAGCAAAATATGCCTACTTGGTGAGT
CACCTTGAAAGTTTTGGAATTCTCATATTTTAATCATTATTTATCTTATC
AATGTTTATCTTAAGAAATACCTGTATAGCTCTTcctaaaatatattttg
tttacatttctaCATCTTTACATTTTCAGGGAAAGATTCCGAATGTGAAT
GATACAAACACTCCTTGTATTGTTTTTTCACTCCCAGAAGAAGTTGGTGT
GTTAGCTGACGCCCTTAAGATCTTCAAGGTAAAAACTCGTcccttatttt
ttgttattgcCTATCTATGCTACTTTTTAATACTGTTTCTTCATAGTAAT
TATAATTCATATCTTATCAGGATAAATGTGTCTtgtatataatttcaaaa
acacTACTTTTTCTTAGAAACGTCAAATTAATTTGAAGCATATCGAGTCA
CGACCATCTAAATCTAACAAGAAGGATTATGAATTTTATGTGGATATCGA
TGCAGAGACTGCCAATTCCGAAAGTGTCAAACTTGTCGTAGAAGATTTGA
AGTCGAAAGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGGTAGGTCG
AAAATAAGTTTGCAACATTATCATCTTAAAAAACCTACTGTACCAAGCTT
CATAAGTAATTAAAGCCAAAATCATTCTACtaaaaaacagatttttcacT
CCTAAGTTTAATAGAAATAGTATTATTTCAATAAAGCAACATTCTAATGT
TGTGAATCAGATACGACGTATTGCGCATGGCAGATACGTCGGGGCcgtat
cagatttaaaaaggcTTCCGTCGCTCCTGTTTATTAAATACTACACTAAT
CTATTTTGTACTTTGATGTATTACGTATTCAAGTCCACGGGATTTGTTTT
ACACACACTTACTATATATCGTTTAACATTGATTTGTTATTGAGCTAGCG
ACATTCTTTCTTTTAGAAACTTGTACTATTTTTTTGCTAACTCAAATTTT
TTCGCAATGTTTTTATGTACTTATATACGACTTGACGTAAATATTGCTGG
AAGCTTTTAAGTCTATCAATTCGGCTTCGAAACTTGTTTTTCTGAAAGCA
CATTCAAGTAACATTCCATTTTCAATGCAAGTTGAGACATTAACCAAAAA
CAACTAACTTTGAAACTTCTCTTTGATTTCGTTTAGTTCCATGGTTTCCA
AGAAAAATCGCTGACCTTGACAAATTTGCTGACAGAGTTTTGAGTTATGG
TTCAGAGCTTGATTCAGAACATCCTGTAAGTGACGTTTAGAAAATTTGTT
TCAACTTGAGGAACaatgaaaaattggccaaaatatcgtcctcagtggaa
aattatacttcaatttttgtccctgCTGAAAACAATCAGATAAGcgaatc
ctcactgcaaaatacttTGCTATTTtatccatccccactgaattttatgg
ctcgaagacaatggaattcaaatccccagccctTAAAAACGTGGGAATAT
TAATCctcatcgagttttggtccgttatttttacctccACTGGCTGTAAA
AATCCTACGGGGTTtgcgagaagggggtgtagtGAGGTACTGAACTCGAT
AATGGTTTAATAATCACTTAAACATTTCACTGTCTCATATTTTAGGGATT
CACTGACCCAGTCTACCGAGCAAGACGAAAAGAATTTGCTGACATTGCCA
TCAAATACCGACAGTACGTCTTATGTTGATGTTAAGGCTAATAAGAATTT
CACGTGCTGTTATAGGTTTCATCCTTACTAAATTATCACGCACTGTGTTG
CATAACATTTTACTTTCGATTATCAAATACATGTGGTTATTTTACTTCCA
TATCTGTATCATACGGCAGCTTAACCTCAATTAAAATCGATGaaaagata
attattttttattttagcggAGAGCCGTTACCACGTGTCACTTACACGGA
AGACGAAATTAGCGTTTGGTAAGTTTCCCATGTCTCTTAGTGACGTAAAC
TCTTATATTAATAAAGTGATTATCCTTCTCGTAAATCATAGCAAGTACTT
TTCATCACGCAACTATTATCTCAATGAATTATCGGAATAATGAATATTGA
ATCACATTTTTTCTCGTATTTATAGGAACACAGTTTTCTCTGAGTTGACG
AAGCTATTCCCGAAATATGCGTGCAGAGAAGTCAACTTCATGCTTCCTCT
TCTTGTAGAAAACTGTAATTACAGGTACGTCTCATTGAAGAAGCACTTTT
GTATAAGTTTACAGTGACTTCTCAAAAAATATTGccaatgaaaaaattga
aatgaaccGCCTCTCCAActaaaggaaaaataaaagacgTCATCATCAGA
TATAAAAGACCCTTCAGTCTATCCcaacagaccagaaaatattcaTTAGA
TCAATGAGATAGGGATGTACATAATATTGAACAAACTTAACGGTGCGTGT
TTTGTCAAGGATATcttcatcatttttcattctaCTGACGCTTATTAATT
TCAGAATCGGAGCTATTCCTCAATTAGAAGATGTTTCCAAGTTCTTAAAA
GGTCAGTTTCAAAATCCGTTTTCTCGATAAACTATTTCTTACGTCATTAA
TGAACTCATTTGACGTTTGTTGTTTTAGCAACACATCTAATTCTTGATCA
CCGTAAAACTATACATCAATTTTCACCATTTGATAATTTGCGCTTATCTT
TTCCACAGATTGTACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTAT
CGTCACGTGACTTCTTAGCTGGANTCTTACGTCATTAATGAACTCATTTG
ACGTTTGTTGTTTTAGCAACACATCTAATTCTTGATCACCGTAAAACTAT
ACATCAATTTTCACCATTTGATAATTTGCGCTTATCTTTTCCACAGATTG
TACTGGTTTCACATTGAGACCTGTTGCTGGTTTGTTATCGTCACGTGACT
TCTTAGCTGGACTTGCTTTCCGCGTTTTTCATTCCACGCAATATATCCGA
CATGCAAAGACTCCTATGTATACTCCTGAACCGTAAGTggaaagtaataa
ttatgacgtatgcgtttCGGAGCGCTATTACATGTACGTTTCAAGTAATT
CAATACAGTAATTTCGCGATTTAGCGACTACCACTCCGGTAGTGTAGTAT
TGCATGTGATCGAAAAAGATTTCATCTTTTACTTACTTTGATTTTCAGAG
ATTGCGTCCACGAGTTAATTGGACACGTTCCTTTGTTCGCTGACCCGAGT
TTCGCGCAATTCTCTCAGGTAAACAATGTCCCACctcgaaaattcaaaat
attgtcTTCTTTTCGATCTTGCTATAACAAAGAGATTTTATCCACCAACT
TACCCCAGACTTCTTGTTTAATGGgtcttttgatttgattctttttagGA
AATCGGATTGGCGTCACTTGGTGCTCCCGATGAATGGATCGAAAAACTGG
CTACCGTAAGTTTTCCTTTTTGTTCAAcagttttattgttttttttttgt
tgttgttacaACTGATAATATGGACGGAAAAACTCTACACCTGTTGATTC
CCTTAGGCAGCAAACCTCGACGCGaactttctttattttgatagcTATTT
ATTTTATGCTTTATTATACGCTACCATGCTGTCAATTTTGTCATCTAAAA
GAATTGGTCAATACACCAAactttttataaagttttcacTATACATTTCT
TCAGTAGAAATTTCGCGTTTCCCTTTTTAGTTGTATTGGTTCACAGTGGA
GTTTGGATTATGCCGTCAAGATGGTGAAATCAAAGCTTATGGCGCAGGAT
TGCTCTCTTCCTTTGGCGAGCTACAAGTAAGTGAAAGAATACTTATATAC
CAGTAAACTTTAATCAGTTATCGGTTATACATTACTCCCGTTTTATTATa
caccctttctcacagacccggtaggaatttttcagccagtgggaataaaa
ataacggactgaaactcgatggggattgatattcccaagtTTTTTATAGC
TAGGGATTGATATTACACTGTTTTTTTTGTCAGAAATTTCAGTGATGATG
GAAAAATAATATATtaatttgcagtgaggattggtttatttgattatttt
cagtggggacaaaaattggaggataattttccactggggacgatattatG
GCCAAATTtccaagtgggtctgtgagaagggggtgttataaTTTGTTAGG
AAGGGCTTTGTTCGACATTCGATCCATTAACAAATCCTGATAAAGTGATT
AAGTTTGACATGAATTGAAGCGGTAGTGTTTTCTTTTGGCGTCTTTTTGT
TGAcggttatttttcacatttattcACAGTATTGTGTGTCTGACAAACCG
GAACATTTGGCTTTCGATCCGGAAAAGACATCACAGACCAAATACCCGAT
TACGGAATTCCAACCGCGATATTTCGTAGCGGAATCCTTTGAAGATGCCA
AAGAGAAAGTTAGGTAAGGATTCTAATTTAATTTTCATGTTCTTCTGTTT
TTTGAAACActctgaaaagtttttttttttacatttgaatTTTAACACTG
CAGACGTGTAAGCTTTCTGACTTGATGATGTGTAACGGCTGACCGACTCA
ATGATTGTTTGCGCAGagagaaaatgagcaaaaatctTTGGTTATGAAAG
TTGGCAAACCTTGCTATTTATCATCCATCAGACAGTCGTATTGATGGGGG
GCACGTTTGTTTTAGGAAATGGGCGAATCATATTCCCAAGCCATTCGCAC
TGCACTTCAACCCTTACACACAAATTGTTGAGACGCTAGATCGTAAAGAA
CAGGTCCTTAAATTGATTGAAGACGTGCGAGGAGAATTGGACCATGTATC
GACAGCTCTCTCCAAGCAGCAATGACGAATCTTTTTAAAGTGACTAAATT
GATGACCCGAATACGATTGATAAAATAACTCCCTAGAATAAGCTTAGATA
AATAACTTGGACGTGTCTACTAGAAATCCGATGAAACCTCAAAAGGAACA
TAGCTGGAGCAGAGGAActttaaatttctttgaaagaatTTGTTGCTTGT
GGCTTTCATTTGGATCGATATTTTCGTGACTTTTTGTCATGAAGTCAACC
GGAATGACGtttagaatttttgaattattatttttgaaagaagataaaca
tgaaatattttttctcaaatggttttttttttttttttcatcattaattt
cttgatctccaaaagtatattggttcttcttacaagaagttgaaatattt
tatgtatatgttatgtatATAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtttatgtatatgttatgtatataaatgtatataaaattcta
CGATTCAAACTGATACGAAGTGGACAGCTAAATCATTAATGGAAGCTTAG
TGGGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002353	XLOC_002353	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000041	supercontig	sc0000041:219647..225801 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.60294	6.05241	8.11256	7.3948	15.5149	15.7029	124.572	127.818	226.389	257.074	206.654	229.114	52.887	72.0658	32.7843	15.5155	53.8727	61.9861	43.277	48.2612	70.9305	71.6949	26.6887	37.9349	77.2876	54.0605	211.374	291.794	20.3161	22.6311

Blast

[Close]

BLAST of TCONS_00004228 vs. Swiss-Prot (Human)
Match: PH4H (Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH PE=1 SV=1)

HSP 1 Score: 528.094 bits (1359), Expect = 0.000e+0
Identity = 249/423 (58.87%), Postives = 316/423 (74.70%), Query Frame = 2

Query:  152 NVNDTNTPCIVFSLPEEVGVLADALKIFKKRQINLKHIESRPSKSNKKDYEFYVDIDAET--ANSESVKLVVEDLKSKAKSVVL-HNEESVPWFPRKIADLDKFADRVLSYGSELDSEHPGFTDPVYRARRKEFADIAIKYRHGEPLPRVTYTEDEISVWNTVFSELTKLFPKYACREVNFMLPLLVENCNYRIGAIPQLEDVSKFLKDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHAKTPMYTPEPDCVHELIGHVPLFADPSFAQFSQEIGLASLGAPDEWIEKLATLYWFTVEFGLCRQDGEIKAYGAGLLSSFGELQYCVSDKPEHLAFDPEKTSQTKYPITEFQPRYFVAESFEDAKEKVRKWANHIPKPFALHFNPYTQIVETLDRKEQVLKLIEDVRGELDHVSTALSK 1411
            N N      ++FSL EEVG LA  L++F++  +NL HIESRPS+  K +YEF+  +D  +  A +  +K++  D+ +    +     +++VPWFPR I +LD+FA+++LSYG+ELD++HPGF DPVYRARRK+FADIA  YRHG+P+PRV Y E+E   W TVF  L  L+  +AC E N + PLL + C +    IPQLEDVS+FL+ CTGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH   PMYTPEPD  HEL+GHVPLF+D SFAQFSQEIGLASLGAPDE+IEKLAT+YWFTVEFGLC+Q   IKAYGAGLLSSFGELQYC+S+KP+ L  + EKT+   Y +TEFQP Y+VAESF DAKEKVR +A  IP+PF++ ++PYTQ +E LD  +Q+  L + +  E+  + +AL K
Sbjct:   28 NCNQNGAISLIFSLKEEVGALAKVLRLFEENDVNLTHIESRPSRLKKDEYEFFTHLDKRSLPALTNIIKILRHDIGATVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGILCSALQK 450

The following BLAST results are available for this feature:

BLAST of TCONS_00004228 vs. Swiss-Prot (Human)

BLAST of TCONS_00004228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PH4H	0.000e+0	58.87	Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH...	[more]

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TCONS_00004228 (transcript) - C. hemisphaerica