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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004199 ID=TCONS_00004199|Name=TCONS_00004199|organism=Clytia hemisphaerica|type=transcript|length=2903bpRun BLAST on NCBI protein sequence of TCONS_00004199-protein >TCONS_00004199-protein ID=TCONS_00004199-protein|Name=TCONS_00004199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp MNKYEVIGIVGEGAYGVVMKCRHKETNDIVAIKKFKDGEDNEDMKRTTLRRun BLAST on NCBI transcript from alignment at sc0000041:20969..31239+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004199 ID=TCONS_00004199|Name=TCONS_00004199|organism=Clytia hemisphaerica|type=transcript|length=10271bp|location=Sequence derived from alignment at sc0000041:20969..31239+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:20969..31239+ >TCONS_00004199 ID=TCONS_00004199|Name=TCONS_00004199|organism=Clytia hemisphaerica|type=CDS|length=39729bp|location=Sequence derived from alignment at sc0000041:20969..31239+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004199 vs. Swiss-Prot (Human)
Match: CDKL5 (Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=CDKL5 PE=1 SV=1) HSP 1 Score: 452.21 bits (1162), Expect = 2.299e-141 Identity = 203/313 (64.86%), Postives = 255/313 (81.47%), Query Frame = 3
Query: 207 MNKYEVIGIVGEGAYGVVMKCRHKETNDIVAIKKFKDGEDNEDMKRTTLRELKVLRMLKQENIVQLREAFRKRGKLYLVFEYVEKNMLELLERTPNGVPIPQLKSYIKQLNKAVQWCHQNDVIHRDIKPENLLISNTGLLKLCDFGFARSITDSGTGQYTDYVATRWYRSPELLLGGGYGKAVDIWSIGCILGELSDGQPVFPGESEIDQLYVIQKLIGPLPPAQMHLFNINHRFRGLKFPAITNPLTLKKRYSGILSTDLLDYMEKVLQLEPQKRLNISQCVDHYAFTDXXXXXXXQKKKAPSEPTDVDSGS 1145
MNK+E++G+VGEGAYGVV+KCRHKET++IVAIKKFKD E+NE++K TTLRELK+LR LKQENIV+L+EAFR+RGKLYLVFEYVEKNMLELLE PNGVP ++KSYI QL KA+ WCH+ND++HRDIKPENLLIS+ +LKLCDFGFAR++++ YT+YVATRWYRSPELLLG YGK+VD+WS+GCILGELSDGQP+FPGESEIDQL+ IQK++GPLP QM LF N RF GL+FPA+ +P +L++RY GIL++ LLD M+ +L+L+P R QC++H F + A +P V+S +
Sbjct: 10 MNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVATRWYRSPELLLGAPYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQTQRLLDRSPSRSAKRKPYHVESST 322 The following BLAST results are available for this feature:
BLAST of TCONS_00004199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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