TCONS_00004187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004187
Unique NameTCONS_00004187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004187 ID=TCONS_00004187|Name=TCONS_00004187|organism=Clytia hemisphaerica|type=transcript|length=1671bp
ttatttttcataagaTGGCAAGATTTGATATTTCCCTGTCTAGATTAGAT
ATAACAATATTCTGATAATATATGATAtgtttataaattattttttacgt
ATAATATCAACAGCGTTATGTACAATATATGAATACtaaaatttctcatt
ttaaaAAAGATTCCTAACAATCTGGCATATAataaaatactataaaaaaC
TATAAAGGCCTATAAATACTTTTAATGGACAtttaattgttctttttcat
tgttttagGATGAACGTGTCGTCTTGCGAAAATTTCCAAGCTTTGCACGG
AATCCGAAGAAGAATGTCGGACACCGCATTCGATACGTTCTGGTTTTCGG
ACAATGTTTAAAAGACGTTGTAAAGCAAGTTCTACTGTTTGATATTCATT
TGAAATGATCATTCGAAACCATCCGTTTTCTTTGGTTTCAAAAGCTTGTC
CTGGTACCAGGTATAAACCATTCTTCATCAGCTTTTCAAAGAGTTCTGTT
TCACTTTGTATACTTTGATCTTTCATGCATTTGGAGAGATTCATCCAAAC
AAATACTCCACTTTGTGGGTAAACGAAAGGGATGTTTGTTTGTGAGAGTT
TCTTAGCAACCAAGTTTCGGTTTTGTTGTAATCTTTGGTGATTGATTTGA
ACCAATTTATCGAGCCATTGGGAATCTGTGATCATTTCTTCCAAGATATA
TTGTGTGACTGTGGAAACACTGGTGTAATATCCTTGAGATCCCAAGTCGT
GTTGTAACTCTTCATTTTTGGTGATAGCAACTCCAACTCGAAATCCAGAT
AAACTGAAATCTTTGCTGAAGCCCCATACGACGTGAATGTGATCGCGATA
TTTGTGGAAGTTCTTGATAGAAAGAAGACTTTTGAAAGATGCATTTTGAT
CGTAAACTGAAAGCAAGTAGATTTCATCACAAACCAAATGAAGGTCGTTG
TTGTAGCAGAATTCAGCCATCATTTCTAATTCTTCTTCAGTGTAGACAGT
ACCTAAAGGATTGTTTGGGTTGGATAAGAGCAAAGCTTTGACTGGAATGC
CACTGTCTTCAGCACCTTCTAAAGCTTCTTCCAGTTTTTGAAGAGTGATT
TGAAAAGCTTGTTTTCCTTGGCAATCGAGATGAACAGGGATGGTTTTGAC
AGCAATGCGTTGTTCCAGGTCACTTTTGAACCCAGTGTAGTAAGGAGCTG
GTATAAGAACACCATCACCTTCATTGCAGATGGAACGACCAATAGTTTCG
ATCACTGTTCCACATCCATTCATCACATAAACATCTTGTTCCACTATCTT
CTCTTGTGGGTGCATGAATCGGTTGAAAAATGCCGACAGTTTTTGTCGGA
AAGCATCTGTACCGGACAGTTTGCAGTAATGTGTATAACTTTCGTGCATT
TGATCAAGTTTGATGTCAGCTAATTTCTCTTGAATGAGGTCGAAGAGAAG
TCTGTTTTCAGCAGTACCAAGATTGATGATTCCATCAGGGTTTTGTTGAG
GATGGTAAGGGTTTTGATGATGGCGATACCAAGCTGTGTGAAGAAGGTTG
GGTTGTCCTTTACTTTTGGTGCAAGCTCGACGCGATAACGAAGGCATCTT
GTCTGTAAATTGTATATCTGTCACTACACGTTGTTTTTCTCCGTGAGGTG
TTGACTGTATGAGCATTTGCT
Run BLAST on NCBI

protein sequence of TCONS_00004187-protein

>TCONS_00004187-protein ID=TCONS_00004187-protein|Name=TCONS_00004187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
QMLIQSTPHGEKQRVVTDIQFTDKMPSLSRRACTKSKGQPNLLHTAWYRH
HQNPYHPQQNPDGIINLGTAENRLLFDLIQEKLADIKLDQMHESYTHYCK
LSGTDAFRQKLSAFFNRFMHPQEKIVEQDVYVMNGCGTVIETIGRSICNE
GDGVLIPAPYYTGFKSDLEQRIAVKTIPVHLDCQGKQAFQITLQKLEEAL
EGAEDSGIPVKALLLSNPNNPLGTVYTEEELEMMAEFCYNNDLHLVCDEI
YLLSVYDQNASFKSLLSIKNFHKYRDHIHVVWGFSKDFSLSGFRVGVAIT
KNEELQHDLGSQGYYTSVSTVTQYILEEMITDSQWLDKLVQINHQRLQQN
RNLVAKKLSQTNIPFVYPQSGVFVWMNLSKCMKDQSIQSETELFEKLMKN
GLYLVPGQAFETKENGWFRMIISNEYQTVELALQRLLNIVRKPERIECGV
RHSSSDSVQSLEIFARRHVHPKTMKKNN
Run BLAST on NCBI

transcript from alignment at sc0000039:609912..611582

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004187 ID=TCONS_00004187|Name=TCONS_00004187|organism=Clytia hemisphaerica|type=transcript|length=1671bp|location=Sequence derived from alignment at sc0000039:609912..611582 (Clytia hemisphaerica)
AGCAAATGCTCATACAGTCAACACCTCACGGAGAAAAACAACGTGTAGTG
ACAGATATACAATTTACAGACAAGATGCCTTCGTTATCGCGTCGAGCTTG
CACCAAAAGTAAAGGACAACCCAACCTTCTTCACACAGCTTGGTATCGCC
ATCATCAAAACCCTTACCATCCTCAACAAAACCCTGATGGAATCATCAAT
CTTGGTACTGCTGAAAACAGACTTCTCTTCGACCTCATTCAAGAGAAATT
AGCTGACATCAAACTTGATCAAATGCACGAAAGTTATACACATTACTGCA
AACTGTCCGGTACAGATGCTTTCCGACAAAAACTGTCGGCATTTTTCAAC
CGATTCATGCACCCACAAGAGAAGATAGTGGAACAAGATGTTTATGTGAT
GAATGGATGTGGAACAGTGATCGAAACTATTGGTCGTTCCATCTGCAATG
AAGGTGATGGTGTTCTTATACCAGCTCCTTACTACACTGGGTTCAAAAGT
GACCTGGAACAACGCATTGCTGTCAAAACCATCCCTGTTCATCTCGATTG
CCAAGGAAAACAAGCTTTTCAAATCACTCTTCAAAAACTGGAAGAAGCTT
TAGAAGGTGCTGAAGACAGTGGCATTCCAGTCAAAGCTTTGCTCTTATCC
AACCCAAACAATCCTTTAGGTACTGTCTACACTGAAGAAGAATTAGAAAT
GATGGCTGAATTCTGCTACAACAACGACCTTCATTTGGTTTGTGATGAAA
TCTACTTGCTTTCAGTTTACGATCAAAATGCATCTTTCAAAAGTCTTCTT
TCTATCAAGAACTTCCACAAATATCGCGATCACATTCACGTCGTATGGGG
CTTCAGCAAAGATTTCAGTTTATCTGGATTTCGAGTTGGAGTTGCTATCA
CCAAAAATGAAGAGTTACAACACGACTTGGGATCTCAAGGATATTACACC
AGTGTTTCCACAGTCACACAATATATCTTGGAAGAAATGATCACAGATTC
CCAATGGCTCGATAAATTGGTTCAAATCAATCACCAAAGATTACAACAAA
ACCGAAACTTGGTTGCTAAGAAACTCTCACAAACAAACATCCCTTTCGTT
TACCCACAAAGTGGAGTATTTGTTTGGATGAATCTCTCCAAATGCATGAA
AGATCAAAGTATACAAAGTGAAACAGAACTCTTTGAAAAGCTGATGAAGA
ATGGTTTATACCTGGTACCAGGACAAGCTTTTGAAACCAAAGAAAACGGA
TGGTTTCGAATGATCATTTCAAATGAATATCAAACAGTAGAACTTGCTTT
ACAACGTCTTTTAAACATTGTCCGAAAACCAGAACGTATCGAATGCGGTG
TCCGACATTCTTCTTCGGATTCCGTGCAAAGCTTGGAAATTTTCGCAAGA
CGACACGTTCATCctaaaacaatgaaaaagaacaattaaaTGTCCATTAA
AAGTATTTATAGGCCTTTATAGttttttatagtattttatTATATGCCAG
ATTGTTAGGAATCTTTtttaaaatgagaaattttaGTATTCATATATTGT
ACATAACGCTGTTGATATTATacgtaaaaaataatttataaacaTATCAT
ATATTATCAGAATATTGTTATATCTAATCTAGACAGGGAAATATCAAATC
TTGCCAtcttatgaaaaataa

Coding sequence (CDS) from alignment at sc0000039:609912..611582

>TCONS_00004187 ID=TCONS_00004187|Name=TCONS_00004187|organism=Clytia hemisphaerica|type=CDS|length=1437bp|location=Sequence derived from alignment at sc0000039:609912..611582 (Clytia hemisphaerica)
CAAATGCTCATACAGTCAACACCTCACGGAGAAAAACAACGTGTAGTGAC
AGATATACAATTTACAGACAAGATGCCTTCGTTATCGCGTCGAGCTTGCA
CCAAAAGTAAAGGACAACCCAACCTTCTTCACACAGCTTGGTATCGCCAT
CATCAAAACCCTTACCATCCTCAACAAAACCCTGATGGAATCATCAATCT
TGGTACTGCTGAAAACAGACTTCTCTTCGACCTCATTCAAGAGAAATTAG
CTGACATCAAACTTGATCAAATGCACGAAAGTTATACACATTACTGCAAA
CTGTCCGGTACAGATGCTTTCCGACAAAAACTGTCGGCATTTTTCAACCG
ATTCATGCACCCACAAGAGAAGATAGTGGAACAAGATGTTTATGTGATGA
ATGGATGTGGAACAGTGATCGAAACTATTGGTCGTTCCATCTGCAATGAA
GGTGATGGTGTTCTTATACCAGCTCCTTACTACACTGGGTTCAAAAGTGA
CCTGGAACAACGCATTGCTGTCAAAACCATCCCTGTTCATCTCGATTGCC
AAGGAAAACAAGCTTTTCAAATCACTCTTCAAAAACTGGAAGAAGCTTTA
GAAGGTGCTGAAGACAGTGGCATTCCAGTCAAAGCTTTGCTCTTATCCAA
CCCAAACAATCCTTTAGGTACTGTCTACACTGAAGAAGAATTAGAAATGA
TGGCTGAATTCTGCTACAACAACGACCTTCATTTGGTTTGTGATGAAATC
TACTTGCTTTCAGTTTACGATCAAAATGCATCTTTCAAAAGTCTTCTTTC
TATCAAGAACTTCCACAAATATCGCGATCACATTCACGTCGTATGGGGCT
TCAGCAAAGATTTCAGTTTATCTGGATTTCGAGTTGGAGTTGCTATCACC
AAAAATGAAGAGTTACAACACGACTTGGGATCTCAAGGATATTACACCAG
TGTTTCCACAGTCACACAATATATCTTGGAAGAAATGATCACAGATTCCC
AATGGCTCGATAAATTGGTTCAAATCAATCACCAAAGATTACAACAAAAC
CGAAACTTGGTTGCTAAGAAACTCTCACAAACAAACATCCCTTTCGTTTA
CCCACAAAGTGGAGTATTTGTTTGGATGAATCTCTCCAAATGCATGAAAG
ATCAAAGTATACAAAGTGAAACAGAACTCTTTGAAAAGCTGATGAAGAAT
GGTTTATACCTGGTACCAGGACAAGCTTTTGAAACCAAAGAAAACGGATG
GTTTCGAATGATCATTTCAAATGAATATCAAACAGTAGAACTTGCTTTAC
AACGTCTTTTAAACATTGTCCGAAAACCAGAACGTATCGAATGCGGTGTC
CGACATTCTTCTTCGGATTCCGTGCAAAGCTTGGAAATTTTCGCAAGACG
ACACGTTCATCctaaaacaatgaaaaagaacaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002335XLOC_002335Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004187-proteinTCONS_00004187-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004187-exon-sc0000039-1491911889:609912..611582TCONS_00004187-exon-sc0000039-1491911889:609912..611582Clytia hemisphaericaexon
TCONS_00004187-exon-sc0000039-1510915933:609912..611582TCONS_00004187-exon-sc0000039-1510915933:609912..611582Clytia hemisphaericaexon
TCONS_00004187-exon-sc0000039-1575043694:609912..611582TCONS_00004187-exon-sc0000039-1575043694:609912..611582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:609912..611582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0485332	0.165646	0	0.0870118	0.196349	0.0496941	2.1517	1.98612	1.69913	0.956145	1.70708	1.68135	7.25918	5.7298	1.20089	1.22805	7.73477	10.7087	12.8697	25.7086	54.5552	83.1494	9.66978	13.4248	13.2003	10.6028	188.188	243.787	3.40166	2.5153
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004839Aminotransferase_I/II
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR015422PyrdxlP-dep_Trfase_sub2
IPR004838NHTrfase_class1_PyrdxlP-BS
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
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BLAST of TCONS_00004187 vs. Swiss-Prot (Human)
Match: 1A1L2 (Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Homo sapiens GN=ACCSL PE=2 SV=3)

HSP 1 Score: 273.863 bits (699), Expect = 2.571e-83
Identity = 136/398 (34.17%), Postives = 234/398 (58.79%), Query Frame = -3 
Query:  344 HHQNPYHPQQNPDGIINLGTAENRLLFDLIQEKLADIKLDQMHESYTHYCKLSGTDAFRQKLSAFFNRFMHPQEKIVEQDVYVMNGCGTVIETIGRSICNEGDGVLIPAPYYTGFKSDLEQRIAVKTIPVHLDCQ----GKQAFQITLQKLEEALEGAEDSGIPVKALLLSNPNNPLGTVYTEEELEMMAEFCYNNDLHLVCDEIYLLSVYDQNASFKSLLSIKNFHKYRDHIHVVWGFSKDFSLSGFRVGVAITKNEELQHDLGSQGYYTSVSTVTQYILEEMITDSQWLDKL-VQINHQRLQQNRNLVAKKLSQTNIPFVYPQSGVFVWMNLSKCMKDQSIQSETELFEKLMKNGLYLVPGQAFETKENGWFRMIISNEYQTVELALQRLLNIVRK 1522
            + ++ YH  +N  G INLGT+EN+L  DL+ E+L +  ++ + ++   Y    G    R++++ F   +     ++  ++V V+NGC +V   +   +C+ G+  L+PAP+Y GF         V+ IPVHL+ +        FQ+T+ KLEEAL  A   G  V+ L+L NP NPLG +Y+ + L    EF    +LH++ DEIY+LSV+D++ +F S+LS+K+     +  HV+WG SKDF +SGFR G   T N+E+   + + GY  S+S +TQ+ L +++ +++W+DK+ +  N  RL++    +  +L    IPF    SG++VW+NL K +   + + E  L+ + + N L L  G+ +  KE GWF +I ++E   ++LA++R  +++++
Sbjct:  156 YQKDKYHKDKNTLGFINLGTSENKLCMDLMTERLQESDMNCIEDTLLQYPDWRGQPFLREEVARFLTYYCRAPTRLDPENVVVLNGCCSVFCALAMVLCDPGEAFLVPAPFYGGFAFSSRLYAKVELIPVHLESEVTVTNTHPFQLTVDKLEEALLEARLEGKKVRGLVLINPQNPLGDIYSPDSLMKYLEFAKRYNLHVIIDEIYMLSVFDESITFHSILSMKSLPD-SNRTHVIWGTSKDFGISGFRFGALYTHNKEVASAVSAFGYLHSISGITQHKLCQLLQNTEWIDKVYLPTNCYRLREAHKYITAELKALEIPFHNRSSGLYVWINLKKYLDPCTFEEERLLYCRFLDNKLLLSRGKTYMCKEPGWFCLIFADELPRLKLAMRRFCDVLQE 552
The following BLAST results are available for this feature:
BLAST of TCONS_00004187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
1A1L22.571e-8334.17Probable inactive 1-aminocyclopropane-1-carboxylat... [more]
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