TCONS_00004177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004177
Unique NameTCONS_00004177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004177 ID=TCONS_00004177|Name=TCONS_00004177|organism=Clytia hemisphaerica|type=transcript|length=603bp
AAAATAGCTGGGTAAACGAGATAATTCTTAGAGGCATTTGTATATTTTAT
TGATTACCATTTTCTTCATCATTCAGAGTATTGGATTTGAATTTCATTGG
TGTGGTATGGTGTGGTGGTATGTATGTAGAAGATGTGAATCTTGCTATAC
GACACGTCCGCTCTAAAAGTGGGATCCAAAATCTGTTGTCACTGTTGAAT
GCAGCTAACTATGTTTTAGATGACTACATCTGTCGGATATGTCGCTCTTT
CGTCGTATTCTCGTTTGATCTTTGTCGTTTTGACGGGGAAGTTTGCCGTA
TAAAACTAACGTATCAGTCTTCCTGACGGACCGTTAGATGTTCACAACAA
GTATTTTCAAGTGGATTAATGTTATCAATGTGGTAGATTCACTTTTTAAG
AACGTtatcaaaaaatcaacaaacttAACTATAAGCTTAAGCACTTTTTC
TTTTCGattaatttttgacaattttgaaatcatttcATTCTTTTAATTCA
TTCATTATCTTGATATTAGAGGGTAATCATGTCCGATGCAAGGAAATTCA
TTGTGATATATTTGCTTTGCACAGGGAAGTAAATTTCTAATGTGGCGTAA
TCA
Run BLAST on NCBI

transcript from alignment at sc0000039:370793..371395

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004177 ID=TCONS_00004177|Name=TCONS_00004177|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000039:370793..371395 (Clytia hemisphaerica)
TGATTACGCCACATTAGAAATTTACTTCCCTGTGCAAAGCAAATATATCA
CAATGAATTTCCTTGCATCGGACATGATTACCCTCTAATATCAAGATAAT
GAATGAATTAAAAGAATgaaatgatttcaaaattgtcaaaaattaatCGA
AAAGAAAAAGTGCTTAAGCTTATAGTTaagtttgttgattttttgataAC
GTTCTTAAAAAGTGAATCTACCACATTGATAACATTAATCCACTTGAAAA
TACTTGTTGTGAACATCTAACGGTCCGTCAGGAAGACTGATACGTTAGTT
TTATACGGCAAACTTCCCCGTCAAAACGACAAAGATCAAACGAGAATACG
ACGAAAGAGCGACATATCCGACAGATGTAGTCATCTAAAACATAGTTAGC
TGCATTCAACAGTGACAACAGATTTTGGATCCCACTTTTAGAGCGGACGT
GTCGTATAGCAAGATTCACATCTTCTACATACATACCACCACACCATACC
ACACCAATGAAATTCAAATCCAATACTCTGAATGATGAAGAAAATGGTAA
TCAATAAAATATACAAATGCCTCTAAGAATTATCTCGTTTACCCAGCTAT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002327XLOC_002327Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004177-exon-sc0000039-1491911889:370793..371395TCONS_00004177-exon-sc0000039-1491911889:370793..371395Clytia hemisphaericaexon
TCONS_00004177-exon-sc0000039-1510915933:370793..371395TCONS_00004177-exon-sc0000039-1510915933:370793..371395Clytia hemisphaericaexon
TCONS_00004177-exon-sc0000039-1575043694:370793..371395TCONS_00004177-exon-sc0000039-1575043694:370793..371395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:370793..371395 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0878081	0.101954	0	0.121431	0	0.231534	0.10838	0.0758792	0.375955	0	0.0599695	0.479089	0.186577	0.0511305	0.109742	0	0.0692842	0	0	0	0	0	0	0.193355	0.345129	0	0	0.599658	0.203652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top